>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 382 PSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           P++PA  R      S  RSRS++P+ + + +PSRSR
Sbjct: 447 PNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482

>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Brain cyclic nucleotide gated
            channel 3) (BCNG-3)
          Length = 1186

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 361  PPSTSCPPSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMA 498
            PPS+  P S P    + PG LS   +   + T    P P R  FMA
Sbjct: 948  PPSSRSPSSSPGQLGQPPGELSLGLAAGPSSTPETPPRPERPSFMA 993

>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           SLPA   ++P    W    +R  T +  PTP RSR
Sbjct: 64  SLPAAAEEAPEPRCWGPHLNRAATKSPQPTPGRSR 98

>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4
          Length = 1198

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 361  PPSTSCPPSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMA 498
            PPS+  P S P    + PG LS   +     T    P P R  FMA
Sbjct: 961  PPSSRSPSSSPGQLGQPPGELSPGLAAGPPSTPETPPRPERPSFMA 1006

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSKTR 101
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415

>IF2_SYNY3 (P72689) Translation initiation factor IF-2|
          Length = 1001

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 361 PPSTSCPPSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           PPS   PP+ PA K      L+    R+ +P     P P++ +
Sbjct: 162 PPSKPAPPTPPAKKAAPAPRLAGPPGRTASPNKTAVPAPAKPK 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,128,197
Number of Sequences: 219361
Number of extensions: 714131
Number of successful extensions: 2996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)