Clone Name | bart35b07 |
---|---|
Clone Library Name | barley_pub |
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 105 bits (262), Expect = 8e-23 Identities = 46/106 (43%), Positives = 67/106 (63%) Frame = +1 Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 405 C +W VE +N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 406 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPAL 543 ++VW+FD+DET LSNLPYY+ H +G F+ F+ +V G+APAL Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPAL 148
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 100 bits (249), Expect = 3e-21 Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Frame = +1 Query: 184 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 360 LR G G+ + V C S+ L VEAHN+R +KT+P C Y+ G FR DSK V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 361 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 540 QA Y ++ N ++++F ID T LSN+PYY KHG+G FN T ++ +V +G APA Sbjct: 88 QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145 Query: 541 L 543 L Sbjct: 146 L 146
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 100 bits (248), Expect = 3e-21 Identities = 49/108 (45%), Positives = 68/108 (62%) Frame = +1 Query: 220 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 399 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 400 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPAL 543 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APAL Sbjct: 95 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPAL 142
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 100 bits (248), Expect = 3e-21 Identities = 49/108 (45%), Positives = 68/108 (62%) Frame = +1 Query: 220 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 399 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 400 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPAL 543 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APAL Sbjct: 98 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPAL 145
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 89.7 bits (221), Expect = 5e-18 Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Frame = +1 Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 402 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111 Query: 403 GKEVWVFDIDETTLSNLPYYAKHGFG 480 VW+FD+D+T LS++PYYAK+G+G Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYG 137
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 87.0 bits (214), Expect = 3e-17 Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Frame = +1 Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 402 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116 Query: 403 GKEVWVFDIDETTLSNLPYYAKHGFG 480 VW+FD+D+T LS++PYYAK+G+G Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYG 142
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 33.9 bits (76), Expect = 0.30 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +1 Query: 115 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 285 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 286 ASCEGYVGHYMLGSHFRRDSKVVI 357 A + +G L ++R D + +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +1 Query: 244 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 393 G+ +N D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP| P4) Length = 274 Score = 30.4 bits (67), Expect = 3.3 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%) Frame = +1 Query: 316 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 468 +LG ++ +DS +ALAY D K+A K+ V D+DET L N PY Sbjct: 41 VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98 Query: 469 HGFGATPFNATSFNAYV 519 PF+ + +V Sbjct: 99 QVQNNKPFDGKDWTRWV 115
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +1 Query: 169 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 333 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 334 RRDSKVVIDQ 363 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 29.3 bits (64), Expect = 7.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 169 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 261 PLI RPL+G+G A +A DS ++ + N Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582
>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase| B 3) Length = 754 Score = 28.9 bits (63), Expect = 9.7 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = +1 Query: 178 HALRPLLGSGKHA-GVACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVV 354 H L LL S + G++ +W++G A N DW +V G + L S + Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266 Query: 355 IDQALAYVDSLKLAGNGKE 411 ID+ +AY L A KE Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,743,348 Number of Sequences: 219361 Number of extensions: 917927 Number of successful extensions: 3230 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3215 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)