ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart35a11 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SELT_ARATH (Q9STZ2) SelT-like protein precursor | 99 | 9e-21 | 2 | HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory pro... | 45 | 9e-05 | 3 | SELT2_CAEEL (Q19892) Putative selT-like protein F28H7.4 precursor | 36 | 0.053 | 4 | SEPW1_PIG (Q95KL4) Selenoprotein W | 34 | 0.20 | 5 | SELT_MOUSE (P62342) Selenoprotein T precursor | 33 | 0.45 | 6 | SELT_HUMAN (P62341) Selenoprotein T precursor | 33 | 0.45 | 7 | SEPW1_MACMU (P63303) Selenoprotein W | 32 | 1.0 | 8 | SEPW1_HUMAN (P63302) Selenoprotein W | 32 | 1.0 | 9 | SYR_CHLPN (Q9Z7Y3) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... | 32 | 1.3 | 10 | SEPW1_RAT (P63301) Selenoprotein W | 30 | 3.8 | 11 | SEPW1_MOUSE (P63300) Selenoprotein W | 30 | 3.8 | 12 | SELT_DROME (Q9VMV6) SelT-like protein precursor | 30 | 3.8 | 13 | SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor | 30 | 3.8 | 14 | SEPW1_SHEEP (O19097) Selenoprotein W | 29 | 8.5 |
|---|
>SELT_ARATH (Q9STZ2) SelT-like protein precursor| Length = 209 Score = 98.6 bits (244), Expect = 9e-21 Identities = 43/72 (59%), Positives = 56/72 (77%) Frame = +3 Query: 294 GAGFGTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQ 473 G G+G TVE+ FC SCSYKG A++MK+MLE+ FPG++V L NYP PKR+L+K++PV Q Sbjct: 52 GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111 Query: 474 VGAIATIMAGDQ 509 VG I IM G+Q Sbjct: 112 VGVIGLIMGGEQ 123
>HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory protein 6| precursor Length = 244 Score = 45.4 bits (106), Expect = 9e-05 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQVGAIATI 494 V+ FC SC Y+ ++L +PGI++ NYPP + V ++++ ++++ I + Sbjct: 83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142 Query: 495 MAG 503 ++G Sbjct: 143 VSG 145
>SELT2_CAEEL (Q19892) Putative selT-like protein F28H7.4 precursor| Length = 232 Score = 36.2 bits (82), Expect = 0.053 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 327 FCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQVGAIATIMAG 503 F SC YK + +PG+ + N+ P F K L++I+ V ++G IA ++ G Sbjct: 92 FSVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIVITG 150
>SEPW1_PIG (Q95KL4) Selenoprotein W| Length = 86 Score = 34.3 bits (77), Expect = 0.20 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 306 GTTVELQFCASCSYKGNAMTMKRMLETSFPG 398 G V + +C +C YK + +K+ LE FPG Sbjct: 1 GVAVRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>SELT_MOUSE (P62342) Selenoprotein T precursor| Length = 195 Score = 33.1 bits (74), Expect = 0.45 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +3 Query: 306 GTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQVGAI 485 G ++ Q C SC Y+ R++ +P I + NY P R ++ + V ++ I Sbjct: 38 GPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLI 97 Query: 486 ATIMAG 503 I+ G Sbjct: 98 GLIIVG 103
>SELT_HUMAN (P62341) Selenoprotein T precursor| Length = 195 Score = 33.1 bits (74), Expect = 0.45 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +3 Query: 306 GTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQVGAI 485 G ++ Q C SC Y+ R++ +P I + NY P R ++ + V ++ I Sbjct: 38 GPLLKFQICVSCGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLI 97 Query: 486 ATIMAG 503 I+ G Sbjct: 98 GLIIVG 103
>SEPW1_MACMU (P63303) Selenoprotein W| Length = 86 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFPG 398 V + +C +C YK + +K+ LE FPG Sbjct: 4 VRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>SEPW1_HUMAN (P63302) Selenoprotein W| Length = 86 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFPG 398 V + +C +C YK + +K+ LE FPG Sbjct: 4 VRVVYCGACGYKSKYLQLKKKLEDEFPG 31
>SYR_CHLPN (Q9Z7Y3) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 561 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 261 AAAILKPNLDGGAGFGTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPK 440 AA L+P + GFG ++ Q + G + ++ +L+T+ L + P Sbjct: 343 AAGYLQPGIFSHVGFGLVLDPQGKKLKTRSGENVKLRELLDTAIEKAEEALREHRPELTD 402 Query: 441 RVLSKIMPVIQVGAI 485 + + PVI + AI Sbjct: 403 EAIQERAPVIGINAI 417
>SEPW1_RAT (P63301) Selenoprotein W| Length = 87 Score = 30.0 bits (66), Expect = 3.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFPG 398 V + +C +C YK + +K LE FPG Sbjct: 4 VRVVYCGACGYKPKYLQLKEKLEHEFPG 31
>SEPW1_MOUSE (P63300) Selenoprotein W| Length = 87 Score = 30.0 bits (66), Expect = 3.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFPG 398 V + +C +C YK + +K LE FPG Sbjct: 4 VRVVYCGACGYKPKYLQLKEKLEHEFPG 31
>SELT_DROME (Q9VMV6) SelT-like protein precursor| Length = 198 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/69 (24%), Positives = 31/69 (44%) Frame = +3 Query: 294 GAGFGTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKRVLSKIMPVIQ 473 G T+ +C SC Y+ +L +P I V NY P LSK++ ++ Sbjct: 37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALK 96 Query: 474 VGAIATIMA 500 + I ++++ Sbjct: 97 IIIIVSVVS 105
>SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor| Length = 247 Score = 30.0 bits (66), Expect = 3.8 Identities = 14/80 (17%), Positives = 35/80 (43%) Frame = +3 Query: 264 AAILKPNLDGGAGFGTTVELQFCASCSYKGNAMTMKRMLETSFPGINVFLHNYPPAFPKR 443 ++ +KP A T+ + +C SC YK + +P + + N+ P K Sbjct: 70 SSFVKPTAVHHAKDLPTLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKA 129 Query: 444 VLSKIMPVIQVGAIATIMAG 503 +++ + +++ + ++ G Sbjct: 130 YVAQALSFVKMAVLVLVLGG 149
>SEPW1_SHEEP (O19097) Selenoprotein W| Length = 86 Score = 28.9 bits (63), Expect = 8.5 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 315 VELQFCASCSYKGNAMTMKRMLETSFP 395 V + +C +C YK + +K+ LE FP Sbjct: 4 VRVVYCGACGYKPKYLQLKKKLEDEFP 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,882,837 Number of Sequences: 219361 Number of extensions: 872105 Number of successful extensions: 2406 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2405 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
