ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart35a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoce... 33 0.40
2UL51_PRVKA (Q85227) Protein UL51 29 7.5
3IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B ... 29 9.7
4TOM1_MOUSE (O88746) Target of Myb protein 1 29 9.7
5ZN499_HUMAN (Q96K62) Zinc finger protein 499 29 9.7

>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 235 RGTHRRTGKPP---PPPSTCLRRETDDPD-DDASAALGA 131
           RG+H   G PP   PPPS     + DD D DDA A  GA
Sbjct: 396 RGSHGAAGDPPRARPPPSPGAASDDDDDDEDDAGAGAGA 434



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>UL51_PRVKA (Q85227) Protein UL51|
          Length = 236

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 235 RGTHRRTGKPPPPPSTCLRRETDDPDDDASAAL 137
           R T  R   PPPP       E D P+DDA+  L
Sbjct: 181 RATAARPAPPPPPEEAGEDEEGDRPEDDAAPLL 213



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>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 436

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 235 RGTHRRTGKPPPPPSTCLRRETDDPDDDASAALGANLE 122
           RG++ ++   PP      RRE ++PD D SAA G+N +
Sbjct: 292 RGSNFQSSSRPP------RREREEPDIDWSAARGSNFQ 323



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>TOM1_MOUSE (O88746) Target of Myb protein 1|
          Length = 492

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 214 GKPPPPPSTCLRRETDDPDDDASAAL 137
           G P P P T  RR+T + DDD   AL
Sbjct: 467 GPPRPSPGTAPRRKTQEKDDDMLFAL 492



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>ZN499_HUMAN (Q96K62) Zinc finger protein 499|
          Length = 511

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
 Frame = -2

Query: 255 PLGPPRSGEPTVGLESLRHRRRHVCAAKP--------------TIRTMMPAPPSEQISNG 118
           P   P    P +    LRHR RH+ AA+P                R  +PAPP+   + G
Sbjct: 133 PTPLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEG 192

Query: 117 RWICPS 100
               PS
Sbjct: 193 PDADPS 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,572,020
Number of Sequences: 219361
Number of extensions: 843780
Number of successful extensions: 3861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3824
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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