Clone Information

BLAST Search Result

Clone Name	bart35a03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulator...	289	4e-78
2	PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit...	193	4e-49
3	PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit...	193	4e-49
4	RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8	191	2e-48
5	PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit...	190	2e-48
6	RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8	189	4e-48
7	RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8	164	1e-40
8	RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8	162	5e-40
9	RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8	161	1e-39
10	IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 s...	87	3e-17
11	IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 s...	86	8e-17
12	IF35_ARATH (O04202) Eukaryotic translation initiation factor 3 s...	84	2e-16
13	CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalos...	64	3e-10
14	CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signal...	63	7e-10
15	CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signal...	62	9e-10
16	CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalos...	62	1e-09
17	CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalos...	61	2e-09
18	IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 s...	50	5e-06
19	IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 s...	48	2e-05
20	IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 s...	48	2e-05
21	IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 s...	48	2e-05
22	CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalos...	45	2e-04
23	CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalos...	45	2e-04
24	RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Pr...	41	0.003
25	PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit...	40	0.007
26	YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III	39	0.015
27	RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11	39	0.015
28	CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-...	38	0.019
29	CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	38	0.025
30	PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit...	35	0.12
31	PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit...	35	0.16
32	PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit...	35	0.16
33	PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit...	35	0.16
34	CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-...	35	0.21
35	CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-...	35	0.21
36	RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MP...	35	0.21
37	RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11	35	0.21
38	CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.27
39	CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.27
40	CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.36
41	CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	34	0.36
42	CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	32	1.4
43	EFNA1_RAT (P97553) Ephrin-A1 precursor (EPH-related receptor tyr...	32	1.4
44	EFNA1_MOUSE (P52793) Ephrin-A1 precursor (EPH-related receptor t...	32	1.4
45	CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	31	2.3
46	CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4...	31	2.3
47	CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	31	2.3
48	CCA2_THEAC (Q9V302) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21...	31	2.3
49	HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein...	31	3.0
50	HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote...	30	4.0
51	RUVB_NITMU (Q2Y5G5) Holliday junction ATP-dependent DNA helicase...	30	5.2
52	CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-...	30	6.7
53	CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	30	6.7
54	EFNA1_HUMAN (P20827) Ephrin-A1 precursor (EPH-related receptor t...	30	6.7
55	CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4...	30	6.7
56	REXO4_MOUSE (Q6PAQ4) RNA exonuclease 4 (EC 3.1.-.-) (Exonuclease...	30	6.7
57	G3P_PSEAE (P27726) Glyceraldehyde-3-phosphate dehydrogenase (EC ...	29	8.8
58	MUTS1_HALMA (Q5UZG9) DNA mismatch repair protein mutS 1	29	8.8
59	AAA_STAS1 (Q49UX4) N-acetylmuramoyl-L-alanine amidase aaa precur...	29	8.8
60	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	29	8.8

>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7|
           (26S proteasome regulatory subunit rpn8) (MOV34 protein)
          Length = 308

 Score =  289 bits (740), Expect = 4e-78
 Identities = 139/154 (90%), Positives = 146/154 (94%)
 Frame = +1

Query: 124 MDVVKAAQLSGRTLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNS 303
           MDV+K  Q+S RT+EKVVVHPLVLLSIVDHYNRVA+D+ KRVVGVLLG+SSRGVVDVTNS
Sbjct: 1   MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNS 60

Query: 304 YAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFT 483
           YAVPFEEDDKDP IWFLDHNYHESMF MFKRINAKEHVVGWYSTGPKL+ENDLDVHALF 
Sbjct: 61  YAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFN 120

Query: 484 NYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKEN 585
            YVPNPVLVIIDVQPKELGIPTKAYYAVEEVKEN
Sbjct: 121 GYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKEN 154

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>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40) (Mov34
           protein)
          Length = 321

 Score =  193 bits (490), Expect = 4e-49
 Identities = 87/142 (61%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 339
           ++KVVVHPLVLLS+VDH+NR+ +   +KRVVGVLLG+  + V+DV+NS+AVPF+EDDKD 
Sbjct: 6   VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDD 65

Query: 340 RIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 519
            +WFLDH+Y E+M+ MFK++NA+E +VGWY TGPKL +ND+ ++ L   Y PN VLVIID
Sbjct: 66  SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125

Query: 520 VQPKELGIPTKAYYAVEEVKEN 585
           V+PK+LG+PT+AY +VEEV ++
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDD 147

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>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40) (Mov34
           protein homolog)
          Length = 324

 Score =  193 bits (490), Expect = 4e-49
 Identities = 87/142 (61%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 339
           ++KVVVHPLVLLS+VDH+NR+ +   +KRVVGVLLG+  + V+DV+NS+AVPF+EDDKD 
Sbjct: 6   VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDD 65

Query: 340 RIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 519
            +WFLDH+Y E+M+ MFK++NA+E +VGWY TGPKL +ND+ ++ L   Y PN VLVIID
Sbjct: 66  SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125

Query: 520 VQPKELGIPTKAYYAVEEVKEN 585
           V+PK+LG+PT+AY +VEEV ++
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDD 147

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>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8|
          Length = 324

 Score =  191 bits (484), Expect = 2e-48
 Identities = 83/140 (59%), Positives = 117/140 (83%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           ++V+VHPLVLLS VD YNR A+ T++RVVG+LLG ++  VV+V NSYA+PFEED+K+  +
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 525
           WFLDHN+ ESM  MFK+INA E +VGWY TGP+L+ +DL+++ L   Y+PNPVLVIIDV+
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVK 134

Query: 526 PKELGIPTKAYYAVEEVKEN 585
           PK +G+PT AY+A++E++++
Sbjct: 135 PKSVGLPTNAYFAIDEIEDD 154

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>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40)
           (Proteasome subunit p39B) (Protein Mov34)
          Length = 337

 Score =  190 bits (483), Expect = 2e-48
 Identities = 88/144 (61%), Positives = 119/144 (82%), Gaps = 2/144 (1%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGT-SSRGVVDVTNSYAVPFEEDDK 333
           ++ KV+VHPLVLLS+VDH+NR+ +   +KRVVGVLLG   S+GV+DV+NS+AVPF+EDDK
Sbjct: 6   SVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDK 65

Query: 334 DPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVI 513
           D  +WFLDH+Y E+M+ MFK++NA+E VVGWY TGPKL +ND+ ++ L   Y PN VLVI
Sbjct: 66  DKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVI 125

Query: 514 IDVQPKELGIPTKAYYAVEEVKEN 585
           ID +PK+LG+PT+AY +VEEV ++
Sbjct: 126 IDAKPKDLGLPTEAYISVEEVHDD 149

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>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8|
          Length = 352

 Score =  189 bits (481), Expect = 4e-48
 Identities = 88/140 (62%), Positives = 112/140 (80%), Gaps = 2/140 (1%)
 Frame = +1

Query: 172 VVVHPLVLLSIVDHYNRVA--RDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           V V PLVLLS+VDHYNR    +   KRVVGVLLG +    V V+NS+AVPFEEDDKDP +
Sbjct: 16  VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFEEDDKDPSV 75

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 525
           WFLDHNY ESM  MFK++NA+E ++GWY +GPKL+ +DLD++ LF  Y PNP+LVI+DVQ
Sbjct: 76  WFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQ 135

Query: 526 PKELGIPTKAYYAVEEVKEN 585
           PKE G+PT AY+AV+E+K++
Sbjct: 136 PKETGVPTDAYFAVDEIKDD 155

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>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8|
          Length = 326

 Score =  164 bits (416), Expect = 1e-40
 Identities = 77/141 (54%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           E+V V PLVLLS++DHY R+     KR VGVLLG +S   + VTNS+A+PFEED+K+P +
Sbjct: 6   EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDV 65

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 522
           WFLDHNY E+M  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   N +L+I+DV
Sbjct: 66  WFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDV 125

Query: 523 QPKELGIPTKAYYAVEEVKEN 585
           + + +G+PT AY A+EEVK++
Sbjct: 126 KQQGVGLPTDAYMAIEEVKDD 146

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>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8|
          Length = 329

 Score =  162 bits (411), Expect = 5e-40
 Identities = 75/141 (53%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           + V + PLVLLS++DHY R      KR VGV+LG S    + VTNS+A+PFEED+K+  +
Sbjct: 6   DNVTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDV 65

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 522
           WFLDHNY ESM  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   NP+L+I+DV
Sbjct: 66  WFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVDV 125

Query: 523 QPKELGIPTKAYYAVEEVKEN 585
           + +++G+PT AY AVE+VK++
Sbjct: 126 KQQDVGLPTDAYMAVEQVKDD 146

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>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8|
          Length = 337

 Score =  161 bits (408), Expect = 1e-39
 Identities = 74/141 (52%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           EKV + PLVLLS +DHY R      KR VGV+LG ++   + VTNS+A+PFEED+K+  +
Sbjct: 5   EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDV 64

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 522
           WFLDHNY E+M  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   NP+L+I+DV
Sbjct: 65  WFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDV 124

Query: 523 QPKELGIPTKAYYAVEEVKEN 585
           + + +G+PT AY A+E+VK++
Sbjct: 125 KQQGVGLPTDAYVAIEQVKDD 145

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>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 357

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 42/129 (32%), Positives = 76/129 (58%)
 Frame = +1

Query: 172 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 351
           V +HP++L SIVD Y R   +   RV+G LLGT  +  V+VTN ++VP  E + +  +  
Sbjct: 92  VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV-- 148

Query: 352 LDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQPK 531
            D  + ++M+ + K+++  E ++GWY+TG  + E+ + +H  ++   PNP+ + +D   +
Sbjct: 149 -DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQ 207

Query: 532 ELGIPTKAY 558
              +  KAY
Sbjct: 208 NGRMSIKAY 216

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>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 42/129 (32%), Positives = 76/129 (58%)
 Frame = +1

Query: 172 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 351
           V +HP++L SIVD Y R   +   RV+G LLGT  +  V+VTN ++VP  E + +  +  
Sbjct: 96  VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV-- 152

Query: 352 LDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQPK 531
            D  + ++M+ + K+++  E ++GWY+TG  + E+ + +H  ++   PNP+ + +D   +
Sbjct: 153 -DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQ 211

Query: 532 ELGIPTKAY 558
              +  KAY
Sbjct: 212 HGRMSIKAY 220

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>IF35_ARATH (O04202) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
          Length = 293

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKDPRIWFL 354
           +HPLV+ ++ D + R   D+ +RV+G LLG+    G VD+ NSYAVP  E      +   
Sbjct: 30  IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV--- 85

Query: 355 DHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 519
           D +YH +M +   ++N+KE +VGWYSTG  +      +H  +   VPNP+ + +D
Sbjct: 86  DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVD 140

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>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 318

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
 Frame = +1

Query: 115 GEEMDVVKAAQLSGRTLE---KVVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSR 279
           G E+DV     +  + +     V +HPLV+L+I DH+ R+     +  +V+G L+G    
Sbjct: 10  GMEVDVAALPSVMAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEG 69

Query: 280 GVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKEND 459
             ++V NS+ +  + +D+   I   +  Y+ +    FK++      +GWY+TG     +D
Sbjct: 70  RNIEVMNSFELLSQINDEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSD 126

Query: 460 LDVHALFTNYVPNPVLVIIDVQPKELGIPTKAYYAVEEV 576
           + VH      + +P+ + ++   K   +P   Y +V ++
Sbjct: 127 IHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVYESVIDI 165

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>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit|
           6b) (AtCSN6b)
          Length = 317

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRK----------------------RVVGVLLGTSSRGVVD 291
           +HPLV+L+I DH+ RV                            RV G ++G      V+
Sbjct: 13  LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVE 72

Query: 292 VTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVH 471
           + NS+ + F     DP +  LD ++ E    ++K++    +V+GWYSTG    E+D+ +H
Sbjct: 73  IFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIH 127

Query: 472 ALFTNYVPNPVLVIID 519
               +   +PV V+++
Sbjct: 128 KALMDINESPVYVLLN 143

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>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit|
           6a) (AtCSN6a)
          Length = 317

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRK----------------------RVVGVLLGTSSRGVVD 291
           +HPLV+++I DHY RV                            RV G ++G      V+
Sbjct: 13  LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVE 72

Query: 292 VTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVH 471
           + NS+ + +     DP    LD ++ E    ++K++    +++GWYSTG   +E+D+ +H
Sbjct: 73  IFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIH 127

Query: 472 ALFTNYVPNPVLVIID 519
               +   +PV V+++
Sbjct: 128 KALMDINESPVYVLLN 143

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>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
          Length = 324

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = +1

Query: 115 GEEMDV-VKAAQLSGRTLE-KVVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSRG 282
           G E+D  V +   SG T    V +HPLV+L+I DH+ R+     +  +V+G L+G     
Sbjct: 17  GMEVDAAVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGR 76

Query: 283 VVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDL 462
            ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+
Sbjct: 77  NIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDI 133

Query: 463 DVHALFTNYVPNPVLVIIDVQPKELGIPTKAYYAVEEV 576
            VH      + +P+ + ++   K   +P   + +V ++
Sbjct: 134 HVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDI 171

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>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
           (Vpr-interacting protein) (hVIP) (MOV34 homolog)
          Length = 327

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
 Frame = +1

Query: 115 GEEMD--VVKAAQLSGRTLE-KVVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSR 279
           G E+D  VV +    G T    V +HPLV+L+I DH+ R+     +  +V+G L+G    
Sbjct: 19  GMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEG 78

Query: 280 GVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKEND 459
             ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D
Sbjct: 79  RNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSD 135

Query: 460 LDVHALFTNYVPNPVLVIIDVQPKELGIPTKAYYAVEEV 576
           + VH      + +P+ + ++   K   +P   + +V ++
Sbjct: 136 IHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDI 174

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>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
          Length = 337

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 342
           L  V +  L +L I+ H    +      V G LLG     V++VTN +  P  +DD++  
Sbjct: 22  LRVVQIEGLAVLKIIKHCKEFSPTL---VTGQLLGLDVGSVLEVTNCFPFPVRDDDEE-- 76

Query: 343 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPN---PVLVI 513
           I     NY   M    + +N   + VGWY +        +++   F NY  N    V +I
Sbjct: 77  IEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCII 136

Query: 514 IDVQPKELGI 543
            D    +LG+
Sbjct: 137 YDPSKADLGV 146

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>IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h)
          Length = 352

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 339
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 340 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 510
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 511 IID-VQPKELGIPTKAYYAVEEVKE 582
           I D ++  +  +  KAY    ++ E
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLME 175

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>IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h)
          Length = 352

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 339
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 340 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 510
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 511 IID-VQPKELGIPTKAYYAVEEVKE 582
           I D ++  +  +  KAY    ++ E
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLME 175

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>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma)
          Length = 352

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
 Frame = +1

Query: 163 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 339
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 340 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 510
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 511 IID-VQPKELGIPTKAYYAVEEVKE 582
           I D ++  +  +  KAY    ++ E
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLME 175

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>CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 426

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
 Frame = +1

Query: 151 SGRTLEKVVVHPLVLLSIVDHYNRV---ARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFE 321
           SG    KV++HPLV++ + +HY+R       T K+V G +LG  +   V+  NS+ +  E
Sbjct: 7   SGSCSSKVLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKME 66

Query: 322 -EDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTG--PKLKENDLDVHALFTNYV 492
            E+  +P  +  +H    +    +  +  +  V+G Y  G    L   +  + +  TN V
Sbjct: 67  TEEMAEPVTFSTEHLLQRA--DQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAV 124

Query: 493 PN 498
            N
Sbjct: 125 RN 126

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>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (Dch6)
          Length = 341

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 127 DVVKAAQLSGRTLEKVVVHPLVLLSIVDHYNR--VARDTRKRVVGVLLGTSSRGVVDVTN 300
           +++ AA  SG     + +HPLV+++I +H+ R        ++V G L+G      +++ N
Sbjct: 41  NIMAAAGTSGSVT--ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMN 98

Query: 301 SYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDV 468
           S+ +  +    +  I   + +Y+      +K++ +    +GWY+TG     +D+ +
Sbjct: 99  SFELKTDVIGDETVI---NKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKI 151

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>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)|
          Length = 308

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKDPR 342
           E V +  L LL ++ H       T   V+G++LG       V V + +A+P  +      
Sbjct: 28  ECVYISSLALLKMLRHGRH---GTPMEVMGLMLGEFVDDFTVRVVDVFAMP--QSGTGVS 82

Query: 343 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLV 510
           +  +D  + ++M  M K+    E VVGWY + P     L   D++    F    P  V V
Sbjct: 83  VEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAV 142

Query: 511 IID 519
           ++D
Sbjct: 143 VVD 145

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>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 308

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 336
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 26  TSEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDEYTVRVVDVFAMP--QSGTG 80

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +DH +  +M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 81  VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 140

Query: 505 LVIID 519
            V++D
Sbjct: 141 AVVVD 145

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>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III|
          Length = 319

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E V +  L LL ++ H           V+G++LG       ++VT+ +A+P  +    
Sbjct: 25  TSETVNISSLALLKMLRH---ARSGIPLEVMGLMLGDFVDDYTINVTDVFAMP--QSGTS 79

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  Y      + K +   E+VVGWY + P     L   D++    F    P  V
Sbjct: 80  VTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAV 139

Query: 505 LVIID 519
            V++D
Sbjct: 140 AVVVD 144

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>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11|
          Length = 311

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 336
           T E V +  L LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 28  TKETVYISSLALLKMLKHSRA---GVPMEVMGLMLGDFVDEYTVNVVDVFAMP--QSGTG 82

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    + VVGWY + P     L   D+D    F       V
Sbjct: 83  VSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAV 142

Query: 505 LVIID 519
            V++D
Sbjct: 143 AVVVD 147

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>CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (Dch5) (JAB1 homolog)
          Length = 327

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
 Frame = +1

Query: 172 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 351
           + +  L LL +V H           V+G++LG      + V +++A+P E  +       
Sbjct: 52  IKISALALLKMVMH---ARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQA 108

Query: 352 LDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
             + Y  +     K +   EH VGWY + P     L   D+    L   Y    V +++D
Sbjct: 109 QAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVD 168

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>CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 373

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = +1

Query: 247 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 426
           V+G+L+G +S  ++ V + Y++P +  +         + Y       F  +  ++ +VGW
Sbjct: 88  VMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQYLDAF--VTKEDKIVGW 145

Query: 427 YSTGPK----LKENDLDVHALFTNYVPNPVLVIIDVQPKE 534
           Y + P     L   D+   +L  NY  +P L I+ V PK+
Sbjct: 146 YHSHPGYGCWLSNIDIQTQSLNQNY-QDPYLAIV-VDPKK 183

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>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S proteasome
           regulatory complex subunit p37B) (Yippee-interacting
           protein 5)
          Length = 308

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 25  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVQVIDVFAMP--QTGTG 79

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 80  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 139

Query: 505 LVIID 519
            V++D
Sbjct: 140 AVVVD 144

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>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 312

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E V +  L LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 29  TSETVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVNVIDVFAMP--QSGTG 83

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 84  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAV 143

Query: 505 LVIID 519
            V++D
Sbjct: 144 AVVVD 148

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>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (MAD1)
          Length = 310

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 27  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QSGTG 81

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 82  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 141

Query: 505 LVIID 519
            V++D
Sbjct: 142 AVVVD 146

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>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S
           proteasome-associated PAD1 homolog 1)
          Length = 310

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 27  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QSGTG 81

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 82  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 141

Query: 505 LVIID 519
            V++D
Sbjct: 142 AVVVD 146

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>CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 357
           V  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 57  VSALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 113

Query: 358 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 114 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 171

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>CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 332

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 357
           V  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 55  VSALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 111

Query: 358 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 112 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 169

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>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)|
          Length = 306

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 336
           T E V +  + LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 23  TKETVYISSIALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVNVVDVFAMP--QSGTG 77

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    + VVGWY + P     L   D++    F       V
Sbjct: 78  VSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAV 137

Query: 505 LVIID 519
            V++D
Sbjct: 138 AVVVD 142

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>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11|
          Length = 306

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +1

Query: 160 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 336
           T E V +  + LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 23  TKETVYISSIALLKMLKHGRA---GVPMEVMGLMLGEFVDEYTVNVVDVFAMP--QSGTG 77

Query: 337 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 504
             +  +D  +   M  M K+    + VVGWY + P     L   D++    F       V
Sbjct: 78  VSVEAVDDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAV 137

Query: 505 LVIID 519
            V++D
Sbjct: 138 AVVVD 142

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>CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1) (Kip1 C-terminus-interacting
           protein 2)
          Length = 333

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 357
           +  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 56  ISALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 112

Query: 358 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 113 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 170

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>CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1)
          Length = 333

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +1

Query: 178 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 357
           +  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 56  ISALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 112

Query: 358 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 113 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 170

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>CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
 Frame = +1

Query: 187 LVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNY 366
           L LL +V H           V+G++LG      + + +S+A+P E  +         + Y
Sbjct: 58  LALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEY 114

Query: 367 HESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
             +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 115 MAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 169

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>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 469

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
 Frame = +1

Query: 247 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 426
           V+G++ G   +  + V + Y +P E  +         + Y        K++   E++VGW
Sbjct: 85  VMGMMTGKIIKNSIIVMDVYPLPVEGTETRVNAQAEGYEYMVQYLENLKQVGRDENIVGW 144

Query: 427 YSTGPK----LKENDLDVHALFTNYVPNPVLVIIDVQPKE 534
           Y + P     L   D+   +L  N+    + ++ID    E
Sbjct: 145 YHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTE 184

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>CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 299

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
 Frame = +1

Query: 172 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 351
           V +  + LL ++ H   V++     V+G + G      + + +S+A+P E  +       
Sbjct: 35  VKISAVALLKMLRH---VSQGMPLEVMGYVQGKVEGASLIILDSFALPVEGTETRVNAHE 91

Query: 352 LDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
               Y     ++ K +   E+V+GWY + P     L   D++       Y    V V++D
Sbjct: 92  EAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLD 151

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>EFNA1_RAT (P97553) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61)
          Length = 205

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 403 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 492
           A  H+V W S+ PK +E D  VH    +Y+
Sbjct: 18  ADRHIVFWNSSNPKFREEDYTVHVQLNDYL 47

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>EFNA1_MOUSE (P52793) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61)
          Length = 205

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 403 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 492
           A  H+V W S+ PK +E D  VH    +Y+
Sbjct: 18  ADRHIVFWNSSNPKFREEDYTVHVQLNDYL 47

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>CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 336

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +1

Query: 247 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 426
           V+G++ G      + +T++Y +P E  +         + Y      + +  N  E+V+GW
Sbjct: 66  VMGMMQGYIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREENRLENVIGW 125

Query: 427 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           Y + P     L   D+   +L   +    V V+ID
Sbjct: 126 YHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVID 160

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>CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4.-.-)|
           (Signalosome subunit 5b) (Jun activation domain-binding
           homolog 1)
          Length = 357

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRK-RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 342
           ++V +  L LL +V H    AR      ++G++ G +    + V +++A+P E  +    
Sbjct: 57  KRVHISALALLKMVVH----ARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVN 112

Query: 343 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLV 510
                + Y        K     E+VVGWY + P     L   D+    L   Y    + V
Sbjct: 113 AQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAV 172

Query: 511 IID 519
           +ID
Sbjct: 173 VID 175

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>CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 340

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +1

Query: 247 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 426
           V+G++ G +      VT+++ +P E  +         + Y      + +    +E+VVGW
Sbjct: 74  VMGLMQGYTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENVVGW 133

Query: 427 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID 519
           Y + P     L   D+D  A+   +    + V+ID
Sbjct: 134 YHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVID 168

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>CCA2_THEAC (Q9V302) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
           (Fragment)
          Length = 222

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 313 PFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYV 492
           P +E++   RI   D     +     +R+ A+  +VG Y+ G  L++ DLD+   F    
Sbjct: 13  PTQEEENRLRIISDDIIRKINSICRSRRLRAEAVIVGSYAKGTNLRDGDLDIFIAFDRDY 72

Query: 493 PNPVL 507
           P  ++
Sbjct: 73  PEEII 77

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>HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein avrPtoB)|
           [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)]
          Length = 553

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 338 GSLSSSSNGTA*ELVTSTTPREEVPRSTPTTRFRVSRATRL 216
           GS +SSSN    +   S TP    P   PT R R+SR+T L
Sbjct: 31  GSGASSSNSPQVQPRPSNTPPSNAPAPPPTGRERLSRSTAL 71

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>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 335 SLSSSSNGTA*ELVTSTTPREEVPRSTPTT 246
           S SSSS+ T  +   STTP   VP +TP T
Sbjct: 213 SSSSSSSSTTPKTSASTTPESSVPATTPNT 242

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>RUVB_NITMU (Q2Y5G5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 347

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +1

Query: 397 INAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQPKELGIPTKAYYAVEE 573
           I AKE  VG   T   + E   D+ AL TN  PN VL I ++      +    Y A+E+
Sbjct: 75  IVAKEMGVGLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALED 133

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>CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (JAB1 homolog)
          Length = 368

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 345
           +++ +  + LL +  H     R     ++G+L G        + + +A+P E  +     
Sbjct: 54  KQIKISAIALLKMTMH---AKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNA 110

Query: 346 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVI 513
               + Y      M      KE VVGWY + P     L   D+    L   +    V ++
Sbjct: 111 QAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIV 170

Query: 514 ID 519
           ID
Sbjct: 171 ID 172

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>CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 420

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +1

Query: 247 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 426
           V+G+LLG     ++ V +SY +P E    + R+     +Y  ++  +   +     +VGW
Sbjct: 95  VLGMLLGYVQDEMIVVVDSYRLPVE--GTETRVNAQMESYEYTVQYLETAVPEGLAIVGW 152

Query: 427 YSTGPK----LKENDLDVHALFTNYVPNPVLVIIDVQPK 531
           Y + P     L   D +   L  N+  +P L I+ V PK
Sbjct: 153 YHSHPGYGCWLSGIDAETQTLNQNF-QDPYLAIV-VDPK 189

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>EFNA1_HUMAN (P20827) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61) (Tumor necrosis factor, alpha-induced protein 4)
          Length = 205

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 403 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 492
           A  H V W S+ PK +  D  +H    +YV
Sbjct: 18  ADRHTVFWNSSNPKFRNEDYTIHVQLNDYV 47

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>CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4.-.-)|
           (Signalosome subunit 5a) (Jun activation domain-binding
           homolog 2)
          Length = 358

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 166 EKVVVHPLVLLSIVDHYNRVARDTRK-RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 342
           ++V +  L LL +V H    AR      ++G++ G +    + V +++A+P E  +    
Sbjct: 57  KRVKISALALLKMVVH----ARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVN 112

Query: 343 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGP 441
                + Y        K     E+VVGWY + P
Sbjct: 113 AQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHP 145

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>REXO4_MOUSE (Q6PAQ4) RNA exonuclease 4 (EC 3.1.-.-) (Exonuclease XPMC2)|
           (Prevents mitotic catastrophe 2 protein homolog)
          Length = 432

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 115 GEEMDVVK---AAQLSGRTLEKVVVHPLVLLSIVDHYNRVARDTRK 243
           GEE +VVK   A  L GR L    +H  + +  +DH  +  RDT+K
Sbjct: 314 GEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQK 359

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>G3P_PSEAE (P27726) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)|
           (GAPDH)
          Length = 334

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 145 QLSGRTLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFE 321
           +L+G+     V  P++ +S+VD   +VARDT    V  LL  +S G  V   N+  +   
Sbjct: 224 ELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGSPVLGYNTQPLVSV 283

Query: 322 EDDKDPRIWFLDHNY 366
           + + DPR    D N+
Sbjct: 284 DFNHDPRSSIFDANH 298

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>MUTS1_HALMA (Q5UZG9) DNA mismatch repair protein mutS 1|
          Length = 921

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +1

Query: 304 YAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAK--EHVVGWYSTGPKLKEND----LD 465
           Y  P E D+K+  +  L+   H+  +  F+R+ A+  EH       G  L E D    L 
Sbjct: 508 YTTP-ELDEKERDVLRLEERRHDMEYEHFQRLRARVAEHATLLQDVGRTLAELDAFASLA 566

Query: 466 VHALFTNYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKE 582
           VHA+  ++    V     V   EL I    +  VE+  E
Sbjct: 567 VHAVENDWARPAV-----VDGNELSIEAGRHPVVEQTTE 600

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>AAA_STAS1 (Q49UX4) N-acetylmuramoyl-L-alanine amidase aaa precursor (EC|
           3.5.1.28)
          Length = 327

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 238 RKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHV 417
           RK+++  ++GTS+   V  TN+ A    +      +W + + Y+ S+  +    N   +V
Sbjct: 2   RKKIIATVIGTSALAAVTWTNADAATTYKVKSGDSLWSIANKYNMSVAKLKSLNNLTSNV 61

Query: 418 V 420
           +
Sbjct: 62  I 62

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 166 EKVVVHPLVL--LSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 339
           E +VV P V+  +  VDH      D  ++   V+ G +  G+     +Y V  E +D++ 
Sbjct: 522 EDLVVRPPVVTVMGHVDHGKTRLLDAIRKT-NVIAGEAG-GITQHIGAYQVATEVNDEER 579

Query: 340 RIWFLDHNYHESMFSMFKR 396
           +I F+D   HE+  +M  R
Sbjct: 580 KITFIDTPGHEAFTAMRAR 598


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,419,422
Number of Sequences: 219361
Number of extensions: 1052360
Number of successful extensions: 3407
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3376
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result