ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart34h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full insert sequence Length = 1227 Score = 551 bits (278), Expect = e-154 Identities = 400/440 (90%), Gaps = 3/440 (0%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 114 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 173 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 233 Query: 223 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 282 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 234 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 293 Query: 283 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 342 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 294 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 353 Query: 343 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 402 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 354 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 413 Query: 403 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 462 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 414 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 473 Query: 463 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 522 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 474 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 530 Query: 523 aggatcccgttctggtggag 542 |||||||||| ||||||||| Sbjct: 531 aggatcccgtactggtggag 550
>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full insert sequence Length = 1252 Score = 551 bits (278), Expect = e-154 Identities = 400/440 (90%), Gaps = 3/440 (0%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 138 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 197 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 Query: 223 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 282 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 258 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 317 Query: 283 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 342 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 318 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 377 Query: 343 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 402 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 378 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 437 Query: 403 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 462 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 438 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 497 Query: 463 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 522 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 498 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 554 Query: 523 aggatcccgttctggtggag 542 |||||||||| ||||||||| Sbjct: 555 aggatcccgtactggtggag 574
>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full insert sequence Length = 1236 Score = 551 bits (278), Expect = e-154 Identities = 400/440 (90%), Gaps = 3/440 (0%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 123 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 182 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 242 Query: 223 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 282 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 243 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 302 Query: 283 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 342 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 303 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 362 Query: 343 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 402 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 363 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 422 Query: 403 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 462 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 423 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 482 Query: 463 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 522 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 483 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 539 Query: 523 aggatcccgttctggtggag 542 |||||||||| ||||||||| Sbjct: 540 aggatcccgtactggtggag 559
>ref|XM_475871.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 549 bits (277), Expect = e-153 Identities = 390/427 (91%), Gaps = 3/427 (0%) Strand = Plus / Plus Query: 116 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 175 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | Sbjct: 7 gtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtc 66 Query: 176 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 235 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 gagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 126 Query: 236 gtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgaggcaggagaagaac 295 |||||||||| ||| | | ||||| ||||||||||||||||||| ||||||||||||| Sbjct: 127 atcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaagcaggagaagaac 186 Query: 296 cgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggccaagctcctcgag 355 || ||| |||| |||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct: 187 cgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgag 246 Query: 356 gaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagggctcacaaaagag 415 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 247 gaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcacaaaagag 306 Query: 416 gaacttgcgacccgtagtgatctggttgctgccttacctgatagaattcaatcaataccg 475 ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 307 gaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaatacca 366 Query: 476 gatggtagttcttccgcgacaaagaaaaatggaggttggggagcctcaggatcccgttct 535 ||||||||||| | ||||||||||||| |||||| ||||||||||||||| || Sbjct: 367 gatggtagttcaagtg---caaagaaaaatgggacttggggcgcctcaggatcccgtact 423 Query: 536 ggtggag 542 ||||||| Sbjct: 424 ggtggag 430
>gb|AY107058.1| Zea mays PCO100771 mRNA sequence Length = 737 Score = 486 bits (245), Expect = e-134 Identities = 386/433 (89%) Strand = Plus / Plus Query: 96 atcgggccgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccaga 155 |||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct: 195 atcggggcgcgaggatgaccgtgatcgacatcctcacccgggtggacgcgatctgccaga 254 Query: 156 agtacgacaagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggacccct 215 |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 255 agtacgacaagtacgacgtcgacaagctcaacggcgccaacgtcgccggcgacgacccgt 314 Query: 216 tcgcccgcctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggagg 275 ||||||||||||||| ||||||||||| || ||| ||| ||||| || |||||||| Sbjct: 315 tcgcccgcctctacgcgtccgtcgacgcggacatcaaccaatgcgtcgataaagcggaaa 374 Query: 276 cggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcg 335 |||||| ||| |||||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 375 cggcgaagcaagagaagaaccgggccgcggtggtggcgcttaacgccgagatccggcgca 434 Query: 336 ccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaagg 395 |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| Sbjct: 435 ccaaggccaagctcctcgaggaggaccttcccaagctgcagcgcctcgccgttaagaagg 494 Query: 396 tcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctg 455 | |||||||| |||| ||| ||| ||||||||||||||||||||||||| || ||||||| Sbjct: 495 tgaaagggctgacaagagaagaaattgcgacccgtagtgatctggttgccgctttacctg 554 Query: 456 atagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggg 515 | ||||| |||||||| || |||||||||||| | || ||||||||||||||| |||||| Sbjct: 555 acagaatacaatcaatcccagatggtagttctactgccacaaagaaaaatggaagttggg 614 Query: 516 gagcctcaggatc 528 ||||||||||||| Sbjct: 615 gagcctcaggatc 627
>ref|NM_192084.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 861 Score = 295 bits (149), Expect = 8e-77 Identities = 248/281 (88%) Strand = Plus / Plus Query: 116 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 175 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 7 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 66 Query: 176 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 235 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 67 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 126 Query: 236 gtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgaggcaggagaagaac 295 |||||||| || || | | ||| | ||||||||||||||||||| ||||||||||||| Sbjct: 127 gtcgacgctgacctcaacgaatgcctcgagaaagcggaggcggcgaagcaggagaagaac 186 Query: 296 cgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggccaagctcctcgag 355 || ||| |||| |||||||| ||||| ||||||||| | | |||||||||||||||||| Sbjct: 187 cgcgccacggtggtcgcgctgaacgcggagatccgcggaacgaaggccaagctcctcgag 246 Query: 356 gaggacctgcccaagctgcagcgcctcgcgctcaagaaggt 396 ||||| ||||||||||||||||| ||||| || |||||||| Sbjct: 247 gaggatctgcccaagctgcagcggctcgccctgaagaaggt 287
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 222 bits (112), Expect = 9e-55 Identities = 136/144 (94%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 185035 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 185094 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 185095 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 185154 Query: 223 cctctacggctccgtcgacgccga 246 ||||||||||||| |||||||||| Sbjct: 185155 cctctacggctccatcgacgccga 185178 Score = 184 bits (93), Expect = 2e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 185297 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 185356 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 185357 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 185416 Query: 384 cgctcaagaaggt 396 |||| |||||||| Sbjct: 185417 cgctgaagaaggt 185429 Score = 167 bits (84), Expect = 5e-38 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 186297 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 186356 Query: 453 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 512 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 186357 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 186413 Query: 513 ggggagcctcaggatcccgttctggtggag 542 |||| ||||||||||||||| ||||||||| Sbjct: 186414 ggggcgcctcaggatcccgtactggtggag 186443
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 222 bits (112), Expect = 9e-55 Identities = 136/144 (94%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 22524 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 22583 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 22584 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 22643 Query: 223 cctctacggctccgtcgacgccga 246 ||||||||||||| |||||||||| Sbjct: 22644 cctctacggctccatcgacgccga 22667 Score = 184 bits (93), Expect = 2e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 22786 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 22845 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 22846 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 22905 Query: 384 cgctcaagaaggt 396 |||| |||||||| Sbjct: 22906 cgctgaagaaggt 22918 Score = 167 bits (84), Expect = 5e-38 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 23786 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 23845 Query: 453 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 512 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 23846 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 23902 Query: 513 ggggagcctcaggatcccgttctggtggag 542 |||| ||||||||||||||| ||||||||| Sbjct: 23903 ggggcgcctcaggatcccgtactggtggag 23932
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 222 bits (112), Expect = 9e-55 Identities = 136/144 (94%) Strand = Plus / Plus Query: 103 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 162 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 27310067 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 27310126 Query: 163 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 222 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 27310127 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 27310186 Query: 223 cctctacggctccgtcgacgccga 246 ||||||||||||| |||||||||| Sbjct: 27310187 cctctacggctccatcgacgccga 27310210 Score = 184 bits (93), Expect = 2e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 27310329 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 27310388 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 27310389 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 27310448 Query: 384 cgctcaagaaggt 396 |||| |||||||| Sbjct: 27310449 cgctgaagaaggt 27310461 Score = 167 bits (84), Expect = 5e-38 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 27311329 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 27311388 Query: 453 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 512 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 27311389 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 27311445 Query: 513 ggggagcctcaggatcccgttctggtggag 542 |||| ||||||||||||||| ||||||||| Sbjct: 27311446 ggggcgcctcaggatcccgtactggtggag 27311475 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 17103274 atccgcggcgccaaggccaagctc 17103297
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 116 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 175 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 28239314 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 28239255 Query: 176 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 235 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 28239254 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 28239195 Query: 236 gtcgacgc 243 |||||||| Sbjct: 28239194 gtcgacgc 28239187 Score = 153 bits (77), Expect = 7e-34 Identities = 119/133 (89%) Strand = Plus / Minus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 28239046 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 28238987 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 28238986 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 28238927 Query: 384 cgctcaagaaggt 396 | || |||||||| Sbjct: 28238926 ccctgaagaaggt 28238914 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 28237733 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 28237674 Query: 453 ctgatagaattcaatcaataccggatgg 480 ||||||| ||||| |||||||| ||||| Sbjct: 28237673 ctgataggattcagtcaataccagatgg 28237646
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 116 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 175 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 73821 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 73762 Query: 176 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 235 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 73761 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 73702 Query: 236 gtcgacgc 243 |||||||| Sbjct: 73701 gtcgacgc 73694 Score = 153 bits (77), Expect = 7e-34 Identities = 119/133 (89%) Strand = Plus / Minus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 73553 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 73494 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 73493 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 73434 Query: 384 cgctcaagaaggt 396 | || |||||||| Sbjct: 73433 ccctgaagaaggt 73421 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 72240 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 72181 Query: 453 ctgatagaattcaatcaataccggatgg 480 ||||||| ||||| |||||||| ||||| Sbjct: 72180 ctgataggattcagtcaataccagatgg 72153
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445E10 Length = 145912 Score = 174 bits (88), Expect = 2e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 116 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 175 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 123308 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 123249 Query: 176 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 235 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 123248 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 123189 Query: 236 gtcgacgc 243 |||||||| Sbjct: 123188 gtcgacgc 123181 Score = 153 bits (77), Expect = 7e-34 Identities = 119/133 (89%) Strand = Plus / Minus Query: 264 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 323 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 123040 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 122981 Query: 324 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 383 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 122980 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 122921 Query: 384 cgctcaagaaggt 396 | || |||||||| Sbjct: 122920 ccctgaagaaggt 122908 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 393 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 452 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 121727 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 121668 Query: 453 ctgatagaattcaatcaataccggatgg 480 ||||||| ||||| |||||||| ||||| Sbjct: 121667 ctgataggattcagtcaataccagatgg 121640
>ref|XM_450588.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 134 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 182 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 25 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 73
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 134 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 182 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 11646745 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 11646793
>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0013F08 Length = 166989 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 134 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 182 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 162752 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 162800
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 134 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 182 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 81379 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 81427
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 315 tcaacgccgagatccgccgcgcc 337 ||||||||||||||||||||||| Sbjct: 1668664 tcaacgccgagatccgccgcgcc 1668642
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 120 tcgacatcctcacgcgggtggacgccatct 149 |||||||||||| ||||||||||| ||||| Sbjct: 638721 tcgacatcctcaagcgggtggacgacatct 638750
>gb|AY127871.1| Aeromonas culicicola MTCC 3249 clone SLH RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagctc 184 |||||||||||||||| |||||| ||||| Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
>gb|AY127870.1| Aeromonas culicicola MTCC 3249 clone SH RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagctc 184 |||||||||||||||| |||||| ||||| Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
>gb|AC084610.1|CBRG44C02 Caenorhabditis briggsae cosmid G44C02, complete sequence Length = 41805 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 aagaaggtcaaagggctcacaaaag 413 ||||||||||||||||| ||||||| Sbjct: 23750 aagaaggtcaaagggcttacaaaag 23726
>ref|XM_475114.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 298 atccgcggcgccaaggccaagctc 321
>gb|BT019621.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 577 gctgcagcgcctcgcgctca 558
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 47409 atccgcggcgccaaggccaagctc 47432
>gb|AY185587.1| Aeromonas punctata strain CECT 4221 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY185586.1| Aeromonas allosaccharophila strain CECT 4200 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY185585.1| Aeromonas allosaccharophila strain CECT 4220 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY169354.1| Aeromonas veronii bv. Veronii strain LMG 16334 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY169348.1| Aeromonas allosaccharophila strain CECT 4199 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY169342.1| Aeromonas veronii bv. Veronii strain CECT 4486 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY169339.1| Aeromonas eucrenophila strain CECT 4224 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY169333.1| Aeromonas veronii bv. Sobria strain CECT 4246 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY249199.1| Aeromonas punctata 665c RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY249196.1| Aeromonas jandaei 344 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY249195.1| Aeromonas sobria 350 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|AY249193.1| Aeromonas eucrenophila CECT 4827 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 819 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tcgtcgcgctcaacgccgag 325 |||||||||||||||||||| Sbjct: 1678639 tcgtcgcgctcaacgccgag 1678620
>ref|XM_612268.2| PREDICTED: Bos taurus similar to solute carrier family 27 (fatty acid transporter), member 5, transcript variant 1 (LOC533016), mRNA Length = 2240 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gaggaggacctgcccaagctgcag 376 ||||||| |||||||||||||||| Sbjct: 706 gaggaggtcctgcccaagctgcag 729
>gb|AC129931.19| Mus musculus chromosome 15, clone RP23-136I22, complete sequence Length = 186914 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gaggcaggagaagaaccggg 299 |||||||||||||||||||| Sbjct: 103911 gaggcaggagaagaaccggg 103892
>gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, complete sequence Length = 126566 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 47553 gctgcagcgcctcgcgctca 47572
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tcgtcgcgctcaacgccgag 325 |||||||||||||||||||| Sbjct: 2924036 tcgtcgcgctcaacgccgag 2924017
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 96641 atccgcggcgccaaggccaagctc 96664
>ref|NM_003639.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma (IKBKG), mRNA Length = 2121 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 836 gctgcagcgcctcgcgctca 817
>ref|XM_534016.2| PREDICTED: Canis familiaris similar to mitochondrial ribosomal protein L48 isoform 1 (LOC476812), mRNA Length = 933 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gacctgcccaagctgcagcg 378 |||||||||||||||||||| Sbjct: 28 gacctgcccaagctgcagcg 9
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tcgcgctcaacgccgagatc 328 |||||||||||||||||||| Sbjct: 4881025 tcgcgctcaacgccgagatc 4881006
>emb|X65791.1|GDHOX7GNA G.domseticus Hox-7 cDNA, 3' CDS Length = 861 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 247 ccgccgcgccaaggccaagc 266
>emb|AL606519.6| Human DNA sequence from clone RP11-339D23 on chromosome 1 Contains a novel gene, complete sequence Length = 75939 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 atctggttgctgccttacctgata 458 ||||| |||||||||||||||||| Sbjct: 1381 atctgtttgctgccttacctgata 1404
>gb|AY129002.1| Aeromonas eucrenophila RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
>gb|AY127869.1| Aeromonas culicicola MTCC 3249 RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
>gb|AY127867.1| Aeromonas allosaccharophila RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
>gb|AY127862.1| Aeromonas veronii bv. Veronii RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
>gb|AY127860.1| Aeromonas veronii bv. Sobria RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 agtacgacaagtacgacgccgagaagct 183 |||||||||||||||| |||||| |||| Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
>gb|AY114157.1| Homo sapiens inhibitor of kappaB kinase gamma (IKBKG) mRNA, complete cds Length = 2073 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 801 gctgcagcgcctcgcgctca 782
>emb|X61922.1|GGHOX7 G. gallus Hox-7 mRNA Length = 796 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 195 ccgccgcgccaaggccaagc 214
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tcgtcgcgctcaacgccgag 325 |||||||||||||||||||| Sbjct: 2654040 tcgtcgcgctcaacgccgag 2654021
>gb|BC050612.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:60070 IMAGE:6062527), complete cds Length = 1990 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 724 gctgcagcgcctcgcgctca 705
>gb|BC046922.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone IMAGE:5476394), containing frame-shift errors Length = 1960 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 692 gctgcagcgcctcgcgctca 673
>gb|BC012114.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:20127 IMAGE:4651870), complete cds Length = 2071 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 801 gctgcagcgcctcgcgctca 782
>gb|BC000299.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:8374 IMAGE:2820134), complete cds Length = 1966 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 697 gctgcagcgcctcgcgctca 678
>emb|BX511175.5| Zebrafish DNA sequence from clone DKEY-197A18 in linkage group 21, complete sequence Length = 231778 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 aggccaagctcctcgaggag 358 |||||||||||||||||||| Sbjct: 57568 aggccaagctcctcgaggag 57587
>emb|BX530031.5| Zebrafish DNA sequence from clone DKEY-175M17 in linkage group 21, complete sequence Length = 160736 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 aggccaagctcctcgaggag 358 |||||||||||||||||||| Sbjct: 118821 aggccaagctcctcgaggag 118840
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tcgcgctcaacgccgagatc 328 |||||||||||||||||||| Sbjct: 4862012 tcgcgctcaacgccgagatc 4862031
>emb|CR604149.1| full-length cDNA clone CS0DE005YJ20 of Placenta of Homo sapiens (human) Length = 1943 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 713 gctgcagcgcctcgcgctca 694
>emb|CR600010.1| full-length cDNA clone CS0DL002YJ17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1958 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 720 gctgcagcgcctcgcgctca 701
>gb|AE012065.1| Xanthomonas axonopodis pv. citri str. 306, section 443 of 469 of the complete genome Length = 12654 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tcgcgctcaacgccgagatc 328 |||||||||||||||||||| Sbjct: 10013 tcgcgctcaacgccgagatc 9994
>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence Length = 191499 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 atctggttgctgccttacctgata 458 ||||| |||||||||||||||||| Sbjct: 190880 atctgtttgctgccttacctgata 190903
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 caacgccgagatccgccgcg 335 |||||||||||||||||||| Sbjct: 1210255 caacgccgagatccgccgcg 1210274
>gb|AF074382.1|AF074382 Homo sapiens IkB kinase gamma subunit (IKK-gamma) mRNA, complete cds Length = 1994 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 725 gctgcagcgcctcgcgctca 706
>ref|NG_001576.1| Homo sapiens deltaNEMO (deltaNEMO) pseudogene on chromosome X Length = 9086 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 4405 gctgcagcgcctcgcgctca 4386
>gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chromosome x, complete sequence Length = 174819 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 169335 gctgcagcgcctcgcgctca 169354 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 85947 gctgcagcgcctcgcgctca 85928
>gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1087L19 map q28, complete sequence Length = 147234 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 124782 gctgcagcgcctcgcgctca 124801 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 41215 gctgcagcgcctcgcgctca 41196
>gb|AC074366.6| Homo sapiens BAC clone RP11-255N19 from 2, complete sequence Length = 111517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gaggcaggagaagaaccggg 299 |||||||||||||||||||| Sbjct: 9011 gaggcaggagaagaaccggg 8992
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggccgcggtcgtcgcgctca 317 |||||||||||||||||||| Sbjct: 3468303 ggccgcggtcgtcgcgctca 3468322 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 caagtacgacgccgagaagc 182 |||||||||||||||||||| Sbjct: 2848164 caagtacgacgccgagaagc 2848183
>gb|AF261086.1|AF261086 Homo sapiens NF-kB essential modulator NEMO mRNA, complete cds Length = 2121 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 836 gctgcagcgcctcgcgctca 817
>gb|AE005163.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 24 of 32 of the complete genome Length = 11483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gccggcgaggaccccttcgc 219 |||||||||||||||||||| Sbjct: 6587 gccggcgaggaccccttcgc 6568
>gb|AY888678.1| Synthetic construct Homo sapiens clone FLH010484.01X inhibitor of kappa light polypeptide gene enhancer in B-cells kinase gamma (IKBKG) mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 577 gctgcagcgcctcgcgctca 558
>dbj|D82577.1|AMTMSX1P Ambystoma mexicanum mRNA for Msx1 protein, complete cds Length = 1601 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 594 ccgccgcgccaaggccaagc 613
>dbj|AK111676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B14, full insert sequence Length = 911 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 216 atccgcggcgccaaggccaagctc 239
>emb|AJ334746.1|HSA334746 Homo sapiens genomic sequence surrounding NotI site, clone NB1-154C Length = 690 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acgacaagtacgacgccgag 178 |||||||||||||||||||| Sbjct: 280 acgacaagtacgacgccgag 261
>dbj|AK100184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031H12, full insert sequence Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 atccgccgcgccaaggccaagctc 349 |||||| ||||||||||||||||| Sbjct: 342 atccgcggcgccaaggccaagctc 365
>emb|AJ271718.1|HSA271718 Homo sapiens NEMO/IKKgamma gene for NF-KB essential modulator, exons 2-10 Length = 23106 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 18201 gctgcagcgcctcgcgctca 18182
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cgacgccgagaagctcaacg 188 |||||||||||||||||||| Sbjct: 319776 cgacgccgagaagctcaacg 319795
>gb|AF091453.1|AF091453 Homo sapiens NEMO protein (NEMO) mRNA, complete cds Length = 2035 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 762 gctgcagcgcctcgcgctca 743
>gb|AF062089.1|AF062089 Homo sapiens leucine zipper protein Fip3p mRNA, complete cds Length = 1975 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 687 gctgcagcgcctcgcgctca 668
>gb|AC157529.2| Pan troglodytes BAC clone CH251-498N14 from chromosome unknown, complete sequence Length = 186743 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gctgcagcgcctcgcgctca 389 |||||||||||||||||||| Sbjct: 171480 gctgcagcgcctcgcgctca 171461
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tcgcgctcaacgccgagatc 328 |||||||||||||||||||| Sbjct: 4865773 tcgcgctcaacgccgagatc 4865792
>ref|NM_205488.1| Gallus gallus msh homeobox homolog 1 (Drosophila) (MSX1), mRNA Length = 1310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 711 ccgccgcgccaaggccaagc 730
>gb|AY525844.1| Ambystoma mexicanum Msx1 protein (msx1) mRNA, complete cds Length = 920 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 692 ccgccgcgccaaggccaagc 711
>gb|M76985.1|CHKHBOX7A Chicken homeobox (Hbox 7) mRNA, complete cds Length = 1259 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 692 ccgccgcgccaaggccaagc 711
>gb|M37461.1|PECFAS2AA P.patulum FAS2 gene, exons 1-3 Length = 6357 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tcaatcaataccggatggta 482 |||||||||||||||||||| Sbjct: 89 tcaatcaataccggatggta 70
>dbj|AB072037.1| Lethenteron japonicum mRNA for LjMsxA, partial cds Length = 532 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 332 cgcgccaaggccaagctcctcgaggagg 359 |||||||||||||||| |||| |||||| Sbjct: 109 cgcgccaaggccaagcgcctccaggagg 136
>dbj|D10372.1|CHKHOX7 Gallus gallus mRNA for Chox-7 protein, complete cds Length = 1310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgccgcgccaaggccaagc 347 |||||||||||||||||||| Sbjct: 711 ccgccgcgccaaggccaagc 730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,412,810 Number of Sequences: 3902068 Number of extensions: 4412810 Number of successful extensions: 76842 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75354 Number of HSP's gapped (non-prelim): 1488 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
