Clone Information

BLAST Search Result

Clone Name	bart34h05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RNF13_MOUSE (O54965) RING finger protein 13	73	4e-13
2	RNF13_HUMAN (O43567) RING finger protein 13	72	1e-12
3	RNF13_CHICK (Q90972) RING finger protein 13 (C-RZF)	71	1e-12
4	EDEM3_HUMAN (Q9BZQ6) ER degradation-enhancing alpha-mannosidase-...	41	0.002
5	VSR4_ARATH (Q56ZQ3) Vacuolar sorting receptor 4 precursor (AtVSR...	41	0.002
6	VSR3_ARATH (O80977) Vacuolar sorting receptor 3 precursor (AtVSR...	41	0.002
7	SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)	38	0.017
8	C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)	38	0.017
9	C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)	38	0.017
10	C5AP_STRP8 (Q8NZ80) C5a peptidase precursor (EC 3.4.21.-) (SCP)	38	0.017
11	C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)	37	0.022
12	VSR1_PEA (P93484) Vacuolar sorting receptor 1 precursor (BP-80) ...	36	0.063
13	VSR1_ARATH (P93026) Vacuolar sorting receptor 1 precursor (AtVSR...	36	0.063
14	APE3_YEAST (P37302) Aminopeptidase Y precursor (EC 3.4.11.15)	35	0.082
15	NKX61_HUMAN (P78426) Homeobox protein Nkx-6.1	34	0.24
16	GOLI_DROME (Q06003) Protein goliath precursor (Protein g1)	34	0.24
17	PSL1_CHICK (Q5F383) Signal peptide peptidase-like 2B (EC 3.4.23....	33	0.31
18	NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1	33	0.31
19	VSR2_ARATH (O22925) Vacuolar sorting receptor 2 precursor (AtVSR...	33	0.41
20	PSL1_MOUSE (Q3TD49) Signal peptide peptidase-like 2B (EC 3.4.23....	33	0.53
21	NKX61_RAT (O35762) Homeobox protein Nkx-6.1	33	0.53
22	NKX61_MOUSE (Q99MA9) Homeobox protein Nkx-6.1	33	0.53
23	BADH_HORVU (Q40024) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) ...	32	0.70
24	PSL1_RAT (Q5PQL3) Signal peptide peptidase-like 2B (EC 3.4.23.-)...	32	0.70
25	BADH_ORYSA (O24174) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) ...	32	0.91
26	NUP62_MOUSE (Q63850) Nuclear pore glycoprotein p62 (62 kDa nucle...	32	1.2
27	GOLI_RAT (Q6Y290) Goliath homolog precursor (RING finger protein...	31	1.6
28	GOLI_MOUSE (Q8VEM1) Goliath homolog precursor (RING finger prote...	31	1.6
29	GOLI_HUMAN (Q86XS8) Goliath homolog precursor (RING finger prote...	31	1.6
30	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	31	2.0
31	BADH_SPIOL (P17202) Betaine-aldehyde dehydrogenase, chloroplast ...	31	2.0
32	PSL1_HUMAN (Q8TCT7) Signal peptide peptidase-like 2B (EC 3.4.23....	30	2.7
33	ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V...	30	3.5
34	APS_HUMAN (O14492) SH2 and PH domain-containing adapter protein ...	30	4.5
35	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	30	4.5
36	5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor)...	29	5.9
37	GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (R...	29	5.9
38	KSGA_RHOPA (Q6N5B4) Dimethyladenosine transferase (EC 2.1.1.-) (...	29	7.7
39	BADH_BETVU (P28237) Betaine-aldehyde dehydrogenase, chloroplast ...	29	7.7
40	BADH_ATRHO (P42757) Betaine-aldehyde dehydrogenase, chloroplast ...	29	7.7

>RNF13_MOUSE (O54965) RING finger protein 13|
          Length = 381

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
 Frame = +3

Query: 153 TFLDAPARFGPRVTSDGICGSLRAADPADACTPVRAAP---GSGGMAFVLIARGNCSFEG 323
           TF D PARFG R+ ++G+ G L  + P +AC P+   P    S G   VLI R +C+F+ 
Sbjct: 47  TFEDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDI 106

Query: 324 KVRAAQLAGFDAALVH--DDEDKASLYSM-VGDPEGIHIPAVFVSKMAGQTLK 473
           KV  AQ AG+ AA+VH  D +D  S+ S  +   + I IP+VF+ + +  +LK
Sbjct: 107 KVLNAQRAGYKAAIVHNVDSDDLISMGSNDIDTLKKIDIPSVFIGESSANSLK 159

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>RNF13_HUMAN (O43567) RING finger protein 13|
          Length = 381

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
 Frame = +3

Query: 153 TFLDAPARFGPRVTSDGICGSLRAADPADACTPVRAAP---GSGGMAFVLIARGNCSFEG 323
           TF D PARFG R+ ++G+ G L  + P +AC P+   P    S G   VLI R +C+F+ 
Sbjct: 47  TFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDI 106

Query: 324 KVRAAQLAGFDAALVH--DDEDKASLYSM-VGDPEGIHIPAVFVSKMAGQTLK 473
           KV  AQ AG+ AA+VH  D +D  S+ S  +   + I IP+VF+ + +  +LK
Sbjct: 107 KVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLK 159

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>RNF13_CHICK (Q90972) RING finger protein 13 (C-RZF)|
          Length = 381

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
 Frame = +3

Query: 144 GAATFLDAPARFGPRVTSDGICGSLRAADPADACTPVRAAP---GSGGMAFVLIARGNCS 314
           G  TF D PARFG R+ ++G+ G L  + P +AC P+   P    S     VLI R  C+
Sbjct: 44  GTQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIAPPPLRDNSSTAFIVLIRRLECN 103

Query: 315 FEGKVRAAQLAGFDAALVH--DDEDKASLYSM-VGDPEGIHIPAVFVSKMAGQTLKK 476
           F+ KV  AQ AG+ AA+VH  D +D  S+ S  +   + I IP+VF+ + +  +LK+
Sbjct: 104 FDIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEILKKIDIPSVFIGEASANSLKE 160

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>EDEM3_HUMAN (Q9BZQ6) ER degradation-enhancing alpha-mannosidase-like 3|
          Length = 889

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
 Frame = +3

Query: 144 GAATFLDAPARFGPRVTSDGIC-GSLRAADPADACTPVRAAPGSGGMAFVLIARGNCSFE 320
           G       PA+FG  ++      G + ++ P++ C+ +       G    LI RG C F 
Sbjct: 616 GRVVLTAGPAQFGLDLSKHKETRGFVASSKPSNGCSELTNPEAVMGK-IALIQRGQCMFA 674

Query: 321 GKVRAAQLAGFDAALVHDD-----EDKASLYSMVG---DPEGIHIPAVFVSKMAGQTL 470
            K R  Q AG    +V DD      D A L+ M G   D + I IP +F+    G  +
Sbjct: 675 EKARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFLFSKEGSII 732

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>VSR4_ARATH (Q56ZQ3) Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal|
           growth factor receptor-like protein 2b) (AtELP2b)
           (BP80-like protein a) (AtBP80a)
          Length = 628

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +3

Query: 285 FVLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASL--------YSMVGDPEGIHIPAV 440
           F+L+ RG+C F  KV  AQ AG  A LV D+ D+  +         S     E I IP+ 
Sbjct: 95  FLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSA 154

Query: 441 FVSKMAGQTLKKFARG 488
            V+K  G+ LKK   G
Sbjct: 155 LVTKGFGEKLKKAISG 170

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>VSR3_ARATH (O80977) Vacuolar sorting receptor 3 precursor (AtVSR3) (Epidermal|
           growth factor receptor-like protein 2a) (AtELP2a)
           (BP80-like protein a') (AtBP80a')
          Length = 628

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +3

Query: 285 FVLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASL--------YSMVGDPEGIHIPAV 440
           F+L+ RG+C F  KV  AQ AG  A LV D+ D+  +         S     E I IP+ 
Sbjct: 95  FLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSA 154

Query: 441 FVSKMAGQTLKKFARG 488
            V+K  G+ LKK   G
Sbjct: 155 LVTKGFGEKLKKAISG 170

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>SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1167

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           LI RG+  F+ KV  A+ AG    L++D++DK     +   P    +PA F+S+  G  L
Sbjct: 390 LIERGDIDFKDKVANAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLL 446

Query: 471 K 473
           K
Sbjct: 447 K 447

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>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1181

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           LI RG+  F+ K+  A+ AG    L++D++DK     +   P    +PA F+S+  G  L
Sbjct: 390 LIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLL 446

Query: 471 KK 476
           K+
Sbjct: 447 KE 448

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>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1184

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           LI RG+  F+ K+  A+ AG    L++D++DK     +   P    +PA F+S+  G  L
Sbjct: 390 LIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLL 446

Query: 471 KK 476
           K+
Sbjct: 447 KE 448

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>C5AP_STRP8 (Q8NZ80) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1150

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           LI RG+  F+ K+  A+ AG    L++D++DK     +   P    +PA F+S+  G  L
Sbjct: 390 LIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLL 446

Query: 471 KK 476
           K+
Sbjct: 447 KE 448

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>C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1169

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           LI RG+  F+ K+  A+ AG    L++D++DK     +   P    +PA F+S+  G  L
Sbjct: 392 LIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLL 448

Query: 471 K 473
           K
Sbjct: 449 K 449

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>VSR1_PEA (P93484) Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa|
           proaleurein-binding protein)
          Length = 623

 Score = 35.8 bits (81), Expect = 0.063
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = +3

Query: 288 VLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASL--------YSMVGDPEGIHIPAVF 443
           +L+ RG+C F  KV  AQ AG  A LV DD ++  +         S     E I IP+  
Sbjct: 91  LLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSAL 150

Query: 444 VSKMAGQTLKKFARG 488
           + K  G+ LK    G
Sbjct: 151 IGKSFGEKLKDAISG 165

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>VSR1_ARATH (P93026) Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal|
           growth factor receptor-like protein 1) (AtELP1) (AtELP)
           (BP80-like protein b) (AtBP80b) (Spot 3 protein)
          Length = 623

 Score = 35.8 bits (81), Expect = 0.063
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
 Frame = +3

Query: 285 FVLIARGNCSFEGKVRAAQLAGFDAALVHD------------DEDKASLYSMVGDPEGIH 428
           FVLI RG+C F  K   AQ AG  A LV D            +EDK+    +    + I 
Sbjct: 90  FVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYL----QNIT 145

Query: 429 IPAVFVSKMAGQTLKKFARG 488
           IP+  ++K  G ++K    G
Sbjct: 146 IPSALITKTLGDSIKSALSG 165

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>APE3_YEAST (P37302) Aminopeptidase Y precursor (EC 3.4.11.15)|
          Length = 537

 Score = 35.4 bits (80), Expect = 0.082
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKA--SLYSMVGDPEGIHIPAVFVSKMAGQ 464
           LI RG C F  K   A   GF A +++D+E K+   L+  +G+P    +  V V    G+
Sbjct: 207 LIERGKCPFGDKSNLAGKFGFTAVVIYDNEPKSKEGLHGTLGEPTKHTVATVGVPYKVGK 266

Query: 465 TL 470
            L
Sbjct: 267 KL 268

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>NKX61_HUMAN (P78426) Homeobox protein Nkx-6.1|
          Length = 367

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -1

Query: 421 PSGSPTME*RLALSSSSWTRAASKPASCAARTLPSKLQ--FPRAISTNAIPPEPGAALTG 248
           PSGS +     A +SS+   AA+  A+ AA + P+ L    PR  S +  PP PG   + 
Sbjct: 120 PSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSP 179

Query: 247 VHASAGSAARSDPHIPSLVTRGP 179
             A+  +  R    +  L  R P
Sbjct: 180 SAAAVAAVGRYPKPLAELPGRTP 202

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>GOLI_DROME (Q06003) Protein goliath precursor (Protein g1)|
          Length = 461

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +3

Query: 240 ACTP-VRAA-----PGSGGMAFVLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYS 401
           ACTP +R       P  G     L+ RG C+FE KV+          ++++D+    L  
Sbjct: 121 ACTPYIRGTLGAPIPDKGETWIALVRRGRCTFEEKVKHVYQQNAAGVIIYNDKQVMQLEK 180

Query: 402 MVGDPEGIHIPAVFVSKMAGQTL 470
           M    +  +I AV   +  GQ L
Sbjct: 181 MQIKGKTRNIAAVITYQNIGQDL 203

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>PSL1_CHICK (Q5F383) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein|
           SPP-like 2B) (Protein SPPL2b)
          Length = 596

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +3

Query: 243 CTPVRAAPGSGGMAFVLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEG 422
           C+P     G       ++ RGNC+F  KVR AQ+ G    L+   E            E 
Sbjct: 72  CSPSDVPDGGFNNRIPMVMRGNCTFYEKVRLAQINGARGLLIVSRERLVPPGGNRSQYEE 131

Query: 423 IHIPAVFVS 449
           I IP   +S
Sbjct: 132 IDIPVALLS 140

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>NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1|
          Length = 364

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = -1

Query: 436 AGMCMPSGSPTME*RLALSSSSWTRA-----ASKPASCAARTLPSKLQ--FPRAISTNAI 278
           +G  +PS SP+     + SS+S T A     A+  A+ AA + P+ L    PR  S +  
Sbjct: 110 SGAALPSASPSGSSSSSSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPP 169

Query: 277 PPEPGAALTGVHASAGSAARSDPHIPSLVTRGP 179
           PP PG   +   A+  +  R    +  L  R P
Sbjct: 170 PPPPGLYFSPSAAAVAAVGRYPKPLAELPGRAP 202

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>VSR2_ARATH (O22925) Vacuolar sorting receptor 2 precursor (AtVSR2) (Epidermal|
           growth factor receptor-like protein 4) (AtELP4)
           (BP80-like protein c) (AtBP80c)
          Length = 625

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +3

Query: 270 SGGMAFVLIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPE--------GI 425
           +G   FVL+ RG+C F  K   AQ AG    LV D+  +  +     + E         I
Sbjct: 89  AGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNI 148

Query: 426 HIPAVFVSKMAGQTLK 473
            IP+  VS+  G  +K
Sbjct: 149 TIPSALVSRSLGSAIK 164

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>PSL1_MOUSE (Q3TD49) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein|
           SPP-like 2B) (Protein SPPL2b)
          Length = 578

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           L+ARGNC+F  KVR AQ +G    L+   E            E I IP   +S    Q +
Sbjct: 86  LVARGNCTFYEKVRLAQGSGAHGLLIVSKEKLVPPGGNKTQYEEISIPVALLSHRDLQDI 145

Query: 471 -KKFAR 485
            ++F R
Sbjct: 146 FRRFGR 151

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>NKX61_RAT (O35762) Homeobox protein Nkx-6.1|
          Length = 365

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = -1

Query: 436 AGMCMPSGSPTME*RLALSSSSWTRA-----ASKPASCAARTLPSKLQ--FPRAISTNAI 278
           +G  +PS SP+     + SS+S T A     A+  A+ AA + P+ L    PR  S +  
Sbjct: 111 SGAALPSASPSGSSSSSSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPP 170

Query: 277 PPEPGAALTGVHASAGSAARSDPHIPSLVTRGP 179
           PP PG   +   A+  +  R    +  L  R P
Sbjct: 171 PPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTP 203

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>NKX61_MOUSE (Q99MA9) Homeobox protein Nkx-6.1|
          Length = 365

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = -1

Query: 436 AGMCMPSGSPTME*RLALSSSSWTRA-----ASKPASCAARTLPSKLQ--FPRAISTNAI 278
           +G  +PS SP+     + SS+S T A     A+  A+ AA + P+ L    PR  S +  
Sbjct: 111 SGAALPSASPSGSSSSSSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPP 170

Query: 277 PPEPGAALTGVHASAGSAARSDPHIPSLVTRGP 179
           PP PG   +   A+  +  R    +  L  R P
Sbjct: 171 PPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTP 203

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>BADH_HORVU (Q40024) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)|
          Length = 505

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
 Frame = -1

Query: 385 LSSSSWTRAASKPASCAARTLPSKLQFPRAISTNAIPPEPGAA------LTGVHASAGSA 224
           L  ++W  A +  A C A   PS+L     +   AI  E G        +TG+   AG+ 
Sbjct: 166 LLMATWKVAPALAAGCTAVLKPSELASLTCLELGAICEEIGLPSGVLNIITGLGPDAGAP 225

Query: 223 ARSDPHIPSLVTRGPKRAG 167
             S PH+  +   G    G
Sbjct: 226 IASHPHVDKIAFTGSTATG 244

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>PSL1_RAT (Q5PQL3) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein|
           SPP-like 2B) (Protein SPPL2b)
          Length = 577

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVS 449
           L+ARGNC+F  KVR AQ +G    L+   E            E I IP   +S
Sbjct: 86  LVARGNCTFYEKVRLAQGSGAHGLLIVSKERLVPPRGNKTQYEEISIPVALLS 138

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>BADH_ORYSA (O24174) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)|
          Length = 505

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = -1

Query: 385 LSSSSWTRAASKPASCAARTLPSKLQFPRAISTNAI------PPEPGAALTGVHASAGSA 224
           L  ++W  A +  A C A   PS+L     +    I      PP     +TG+   AG+ 
Sbjct: 167 LLMATWKVAPALAAGCTAVLKPSELASLTCLELGGICAEIGLPPGVLNIITGLGTEAGAP 226

Query: 223 ARSDPHIPSLVTRGPKRAG 167
             S PH+  +   G    G
Sbjct: 227 LASHPHVDKIAFTGSTETG 245

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>NUP62_MOUSE (Q63850) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)|
          Length = 526

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = -1

Query: 460 PAILDTNTAGMCMPSGSPTME*RLALSSSSWTRAASKPASCAARTLPSKLQFPRAISTNA 281
           PA L T TAG   P+ +       +  S+ +   A+ PAS +A    + L  P  ++T A
Sbjct: 194 PATLVTTTAGATQPAAAAPTAATTSAGSTLFASIAAAPASSSA----TGLSLPAPVTTAA 249

Query: 280 IPPEP--GAALTGVHASAGSAARSDPHIPSLVTRGPKRAGAS 161
            P     G +L    A+ G++  S     +  T     A AS
Sbjct: 250 TPSAGTLGFSLKAPGAAPGASTTSTTTTTTTTTTTAAAAAAS 291

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>GOLI_RAT (Q6Y290) Goliath homolog precursor (RING finger protein 130)|
           (R-goliath)
          Length = 419

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           L+ RGNC+F+ K+  A      A ++++++ K    +M     G  I AV ++++ G+ +
Sbjct: 107 LLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTG-DIIAVMITELRGKDI 165

Query: 471 KKF 479
             +
Sbjct: 166 LSY 168

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>GOLI_MOUSE (Q8VEM1) Goliath homolog precursor (RING finger protein 130)|
           (G1-related zinc finger protein)
          Length = 419

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           L+ RGNC+F+ K+  A      A ++++++ K    +M     G  I AV ++++ G+ +
Sbjct: 107 LLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTG-DIIAVMITELRGKDI 165

Query: 471 KKF 479
             +
Sbjct: 166 LSY 168

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>GOLI_HUMAN (Q86XS8) Goliath homolog precursor (RING finger protein 130)|
          Length = 419

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALVHDDEDKASLYSMVGDPEGIHIPAVFVSKMAGQTL 470
           L+ RGNC+F+ K+  A      A ++++++ K    +M     G  I AV ++++ G+ +
Sbjct: 107 LLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTG-DIIAVMITELRGKDI 165

Query: 471 KKF 479
             +
Sbjct: 166 LSY 168

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>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
 Frame = -1

Query: 367 TRAASKPASCAARTLPSKLQFPRAISTNAIPP-----------------EPGAALTGVHA 239
           T AA+ PA+ AA ++P     P   +T A+PP                  P   +  V  
Sbjct: 222 TSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHFPGMPAMPMMNVPM 281

Query: 238 SAGSAARSDPHIPSLVTRGPKRAGAS 161
             G A    P  P +V   P  A A+
Sbjct: 282 GPGGAPLVPPPPPGMVMASPSPAAAT 307

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>BADH_SPIOL (P17202) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC|
           1.2.1.8) (BADH)
          Length = 497

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = -1

Query: 385 LSSSSWTRAASKPASCAARTLPSKL------QFPRAISTNAIPPEPGAALTGVHASAGSA 224
           L  ++W  A +  A C A   PS+L      +F    +   +PP     LTG+   AG+ 
Sbjct: 162 LLMATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAP 221

Query: 223 ARSDPHIPSLVTRGPKRAGA 164
             S P +  +   G    G+
Sbjct: 222 LVSHPDVDKIAFTGSSATGS 241

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>PSL1_HUMAN (Q8TCT7) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein|
           SPP-like 2B) (Protein SPPL2b) (Intramembrane protease 4)
           (IMP4) (Presenilin-like protein 1)
          Length = 592

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 291 LIARGNCSFEGKVRAAQLAGFDAALV 368
           L+ARGNC+F  KVR AQ +G    L+
Sbjct: 92  LVARGNCTFYEKVRLAQGSGARGLLI 117

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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = -1

Query: 439 TAGMCMPSGSPTME*RL-ALSSSSWTRAASKPASCAARTLPSKLQFPRAISTNAIPPEPG 263
           +AG   PS SP+ +  + A SSSS + +++  +S ++ +  S      + S+++     G
Sbjct: 570 SAGAAPPSASPSSQAAVAAASSSSASSSSASSSSASSSSASSSSASSSSASSSSASSSAG 629

Query: 262 AALTGVHASAGSAARSDPHI--PSLVTRGPKR 173
            A   V +++G+  R +  +   +   RGP++
Sbjct: 630 GAGGSVASASGAGERRETSLGPRAAAPRGPRK 661

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>APS_HUMAN (O14492) SH2 and PH domain-containing adapter protein APS (Adapter|
           protein with pleckstrin homology and Src homology 2
           domains)
          Length = 632

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 358 ASKPASCAARTLPSKLQFPRAISTNAIPPEPGAALTGVHASAGSAAR-SDPHIP 200
           AS+ ASC+   L   +  PR   T A+    GA +T  H+    A R S  H+P
Sbjct: 325 ASRVASCSCELLTDAVDLPRPPETTAV----GAVVTAPHSRGRDAVRESLIHVP 374

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 388 ALSSSSWTRAASKPASCAAR-----TLPSKLQFPRAISTNAIPPEPGAALTGVHASAGSA 224
           A   ++ T AAS PAS AA      T+   L  P A+     PP PG        +AG+ 
Sbjct: 353 AAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP----PPAPGTPTGLPKGAAGAV 408

Query: 223 ARSDPHIPSLVTRG 182
            +S    P+  T G
Sbjct: 409 TQSLSRTPTATTSG 422

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>5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor) (Serotonin|
           receptor)
          Length = 446

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 295 ISTNAIPPEPGAALTGVHA---SAGSAARSDPHIPSLVTRGPKRAGASRK 155
           +S+N   PE  +   G+ A   + G  A +  + PSLV R PK A  S++
Sbjct: 311 VSSNNTSPEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKPKEAADSKR 360

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>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA|
           exonuclease 1 homolog-like)
          Length = 427

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
 Frame = -1

Query: 364 RAASKPASCAARTLPSKLQFPRAISTNAIPPEPG-------AALTG-VHASAGSAARSDP 209
           RA  +P   +A        +P+A ST AI PE         A  TG V    G  A+S+P
Sbjct: 300 RAQIQPRHRSASPAALACPWPQAPSTTAISPESSPCPPRRKAKETGAVDGRRGQKAKSNP 359

Query: 208 HIPSLVTRGPKR 173
           + P  V R P R
Sbjct: 360 NRPLPVPRNPCR 371

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>KSGA_RHOPA (Q6N5B4) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 287

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 219 RAADPADACTPVRAAPGSGGMAFVLIARG 305
           RAA P +  T V   PG GG+   L+A G
Sbjct: 41  RAAGPLEGVTVVEIGPGPGGLTRALLATG 69

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>BADH_BETVU (P28237) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC|
           1.2.1.8) (BADH)
          Length = 500

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = -1

Query: 385 LSSSSWTRAASKPASCAARTLPSKL------QFPRAISTNAIPPEPGAALTGVHASAGSA 224
           L  ++W  A +  A C A   PS+L      +F    +   +PP     +TG+   AG+ 
Sbjct: 165 LLMATWKIAPALAAGCTAVLKPSELASITCLEFGEVCNEVGLPPGVLNIVTGLGPDAGAP 224

Query: 223 ARSDPHIPSLVTRGPKRAGA 164
             + P +  +   G    G+
Sbjct: 225 LAAHPDVDKVAFTGSSATGS 244

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>BADH_ATRHO (P42757) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC|
           1.2.1.8) (BADH)
          Length = 502

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
 Frame = -1

Query: 385 LSSSSWTRAASKPASCAARTLPSKL------QFPRAISTNAIPPEPGAALTGVHASAGSA 224
           L   +W  A +  A C     PS+L      +F    +   +PP     LTG+   AG+ 
Sbjct: 167 LLMDTWKIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAP 226

Query: 223 ARSDPHIPSLVTRGPKRAGA 164
             S P I  +   G    G+
Sbjct: 227 IVSHPDIDKVAFTGSSATGS 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,633,391
Number of Sequences: 219361
Number of extensions: 585582
Number of successful extensions: 2707
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2696
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result