ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart34h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
2gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
3gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 2.0
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
5gb|AY396707.1| Carludovica palmata phytochrome C (PHYC) gene, pa... 40 7.9
6gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.9
7ref|XM_359635.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.9
8gb|AY425113.1| Hypericum empetrifolium PHYC (PHYC) gene, partial... 40 7.9
9emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 7.9
10gb|DQ098104.1| Rhodococcus aetherivorans strain I24 putative ben... 40 7.9
11gb|AF276721.1|AF276721 Dioscorea elephantipes phytochrome C (PHY... 40 7.9
12dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.9
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.9
14gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.9

>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05,
             complete sequence
          Length = 109853

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   ggccgtcatgctcagcacgtg 165
             |||||||||||||||||||||
Sbjct: 96294 ggccgtcatgctcagcacgtg 96274



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>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11,
             complete sequence
          Length = 177574

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   ggccgtcatgctcagcacgtg 165
             |||||||||||||||||||||
Sbjct: 68380 ggccgtcatgctcagcacgtg 68360



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 491     ccgaccgtgcccactgcgccg 511
               |||||||||||||||||||||
Sbjct: 2844824 ccgaccgtgcccactgcgccg 2844844



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 145      ggccgtcatgctcagcacgtg 165
                |||||||||||||||||||||
Sbjct: 15982629 ggccgtcatgctcagcacgtg 15982609



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>gb|AY396707.1| Carludovica palmata phytochrome C (PHYC) gene, partial cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 gctcctcatggccgtcatgctcag 159
           |||||||||||| |||||||||||
Sbjct: 415 gctcctcatggctgtcatgctcag 438



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 463     gctgccggcagtacccggcg 482
               ||||||||||||||||||||
Sbjct: 1929449 gctgccggcagtacccggcg 1929468



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>ref|XM_359635.1| Magnaporthe grisea 70-15 hypothetical protein (MG05142.4) partial
            mRNA
          Length = 3891

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   cgcgcgcgcccatggcttcc 109
            ||||||||||||||||||||
Sbjct: 1509 cgcgcgcgcccatggcttcc 1528



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>gb|AY425113.1| Hypericum empetrifolium PHYC (PHYC) gene, partial cds
          Length = 1177

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 gctcctcatggccgtcatgctcag 159
           |||||||||||| |||||||||||
Sbjct: 415 gctcctcatggctgtcatgctcag 438



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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    gcgcgcctcctcgccgacgt 192
              ||||||||||||||||||||
Sbjct: 246316 gcgcgcctcctcgccgacgt 246335



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>gb|DQ098104.1| Rhodococcus aetherivorans strain I24 putative benzaldehyde
            dehydrogenase gene, complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tcctcgccgacgtccccgcc 199
            ||||||||||||||||||||
Sbjct: 1097 tcctcgccgacgtccccgcc 1116



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>gb|AF276721.1|AF276721 Dioscorea elephantipes phytochrome C (PHYC) gene, partial cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 136 gctcctcatggccgtcatgctcag 159
           |||||||||||| |||||||||||
Sbjct: 469 gctcctcatggctgtcatgctcag 492



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 558     tgccgtccgtccccggcgtg 577
               ||||||||||||||||||||
Sbjct: 7113235 tgccgtccgtccccggcgtg 7113216



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 449     gtgccgacggtgccgctgcc 468
               ||||||||||||||||||||
Sbjct: 1522643 gtgccgacggtgccgctgcc 1522624



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 184   cgccgacgtccccgccttgcccataccgacgctgcc 219
             |||||||| | ||||||||||||| ||| |||||||
Sbjct: 78776 cgccgacgccaccgccttgcccatgccgccgctgcc 78811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,180,841
Number of Sequences: 3902068
Number of extensions: 3180841
Number of successful extensions: 92416
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91795
Number of HSP's gapped (non-prelim): 621
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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