ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart34h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
2dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
3dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
4dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.49
5gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome... 42 2.0
6gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosom... 42 2.0
7dbj|AK034788.1| Mus musculus 12 days embryo embryonic body betwe... 42 2.0
8emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chr... 42 2.0
9gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Canc... 42 2.0
10gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 7.7
11gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, com... 40 7.7
12gb|AC012569.18| Homo sapiens chromosome , clone RP11-8H2, comple... 40 7.7
13gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, com... 40 7.7
14emb|AL157932.21| Human DNA sequence from clone RP11-187A9 on chr... 40 7.7
15emb|AL133379.3| Human DNA sequence from clone RP1-230I3 on chrom... 40 7.7
16gb|AC118647.4| Homo sapiens chromosome 18, clone RP11-474O19, co... 40 7.7
17gb|AC097380.2| Homo sapiens BAC clone RP11-336M17 from 4, comple... 40 7.7
18emb|BX322544.6| Zebrafish DNA sequence from clone DKEY-27N14 in ... 40 7.7
19gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, r... 40 7.7
20gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, comp... 40 7.7
21emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 i... 40 7.7
22emb|CR751229.6| Zebrafish DNA sequence from clone CH211-116I17 i... 40 7.7
23gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, ... 40 7.7
24emb|CT573051.1| Medicago truncatula chromosome 5 clone mth2-15e1... 40 7.7
25gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64... 40 7.7
26gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complet... 40 7.7
27emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chr... 40 7.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 445      ccgaccatcccgccgaccacctccctgccg 474
                ||||||||||||||||| ||||| ||||||
Sbjct: 11160314 ccgaccatcccgccgacgacctcgctgccg 11160343



to top

>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0042E12
          Length = 164688

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 445   ccgaccatcccgccgaccacctccctgccg 474
             ||||||||||||||||| ||||| ||||||
Sbjct: 35136 ccgaccatcccgccgacgacctcgctgccg 35165



to top

>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 445   ccgaccatcccgccgaccacctccctgccg 474
             ||||||||||||||||| ||||| ||||||
Sbjct: 90220 ccgaccatcccgccgacgacctcgctgccg 90249



to top

>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full
           insert sequence
          Length = 1731

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 445 ccgaccatcccgccgaccacctccctgccg 474
           ||||||||||||||||| ||||| ||||||
Sbjct: 800 ccgaccatcccgccgacgacctcgctgccg 829



to top

>gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome 13, complete sequence
          Length = 208298

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   atgaagagtatacaaatagaa 178
             |||||||||||||||||||||
Sbjct: 59500 atgaagagtatacaaatagaa 59480



to top

>gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosome 14, complete sequence
          Length = 191219

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 501    ctctcttccattctccaccaa 521
              |||||||||||||||||||||
Sbjct: 101377 ctctcttccattctccaccaa 101357



to top

>dbj|AK034788.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430039D04 product:mannose binding lectin, liver
            (A), full insert sequence
          Length = 1565

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 501  ctctcttccattctccaccaa 521
            |||||||||||||||||||||
Sbjct: 1318 ctctcttccattctccaccaa 1298



to top

>emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chromosome 2, complete
             sequence
          Length = 180824

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   aatgtcatatgggtcaaaaga 248
             |||||||||||||||||||||
Sbjct: 59635 aatgtcatatgggtcaaaaga 59655



to top

>gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198060

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 502    tctcttccattctccaccaag 522
              |||||||||||||||||||||
Sbjct: 117488 tctcttccattctccaccaag 117468



to top

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 533     acatcatcgcgatgtttgcg 552
               ||||||||||||||||||||
Sbjct: 2034372 acatcatcgcgatgtttgcg 2034391



to top

>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence
          Length = 241579

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ctctcttccattctccacca 520
             ||||||||||||||||||||
Sbjct: 20206 ctctcttccattctccacca 20225



to top

>gb|AC012569.18| Homo sapiens chromosome , clone RP11-8H2, complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   catataagctgaaacatgga 297
             ||||||||||||||||||||
Sbjct: 24584 catataagctgaaacatgga 24565



to top

>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence
          Length = 223742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   catggaaatgacctaaagac 311
             ||||||||||||||||||||
Sbjct: 68244 catggaaatgacctaaagac 68225



to top

>emb|AL157932.21| Human DNA sequence from clone RP11-187A9 on chromosome 13 Contains
            part of a novel gene, the 5' end of the DGKH gene for
            diacylglycerol kinase eta, a mitogen-activated protein
            kinase 6 (MAPK6) pseudogene and 2 CpG islands, complete
            sequence
          Length = 67309

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  tccaaacaaagcaacaatgt 277
            ||||||||||||||||||||
Sbjct: 4123 tccaaacaaagcaacaatgt 4142



to top

>emb|AL133379.3| Human DNA sequence from clone RP1-230I3 on chromosome 6q22.1-22.33
             Contains the 3' end of the gene for a novel protein
             similar to FLJ13018, complete sequence
          Length = 111764

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   caagtcaccatgttccctct 369
             ||||||||||||||||||||
Sbjct: 11221 caagtcaccatgttccctct 11240



to top

>gb|AC118647.4| Homo sapiens chromosome 18, clone RP11-474O19, complete sequence
          Length = 71808

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   catataagctgaaacatgga 297
             ||||||||||||||||||||
Sbjct: 11244 catataagctgaaacatgga 11263



to top

>gb|AC097380.2| Homo sapiens BAC clone RP11-336M17 from 4, complete sequence
          Length = 71641

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   gactctcttccattctccac 518
             ||||||||||||||||||||
Sbjct: 45322 gactctcttccattctccac 45341



to top

>emb|BX322544.6| Zebrafish DNA sequence from clone DKEY-27N14 in linkage group 16,
             complete sequence
          Length = 102811

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   aacaatgtcatataagctga 289
             ||||||||||||||||||||
Sbjct: 60292 aacaatgtcatataagctga 60273



to top

>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone
            BACR12P10, complete sequence
          Length = 186686

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 275  tgtcatataagctgaaacatggaaatga 302
            ||||||| || |||||||||||||||||
Sbjct: 9723 tgtcataaaatctgaaacatggaaatga 9750



to top

>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence
          Length = 193220

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    actctcttccattctccacc 519
              ||||||||||||||||||||
Sbjct: 112077 actctcttccattctccacc 112058



to top

>emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 in linkage group 4,
             complete sequence
          Length = 153499

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   attacattatcagatgtgtc 197
             ||||||||||||||||||||
Sbjct: 75409 attacattatcagatgtgtc 75390



to top

>emb|CR751229.6| Zebrafish DNA sequence from clone CH211-116I17 in linkage group 4,
             complete sequence
          Length = 58988

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   attacattatcagatgtgtc 197
             ||||||||||||||||||||
Sbjct: 27794 attacattatcagatgtgtc 27775



to top

>gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, region 92A1-92A2, BAC clone
              BACR48K23, complete sequence
          Length = 173564

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 275    tgtcatataagctgaaacatggaaatga 302
              ||||||| || |||||||||||||||||
Sbjct: 172420 tgtcataaaatctgaaacatggaaatga 172447



to top

>emb|CT573051.1| Medicago truncatula chromosome 5 clone mth2-15e15, COMPLETE SEQUENCE
          Length = 117939

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   aaacaaagcaacaatgtcat 280
             ||||||||||||||||||||
Sbjct: 81957 aaacaaagcaacaatgtcat 81938



to top

>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the
             complete sequence
          Length = 247876

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 275   tgtcatataagctgaaacatggaaatga 302
             ||||||| || |||||||||||||||||
Sbjct: 67882 tgtcataaaatctgaaacatggaaatga 67909



to top

>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence
          Length = 206439

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aacaagaagatgatccacat 84
             ||||||||||||||||||||
Sbjct: 71346 aacaagaagatgatccacat 71365



to top

>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete
             sequence
          Length = 224628

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   ctctcttccattctccacca 520
             ||||||||||||||||||||
Sbjct: 81735 ctctcttccattctccacca 81716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,925,503
Number of Sequences: 3902068
Number of extensions: 4925503
Number of successful extensions: 92919
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92803
Number of HSP's gapped (non-prelim): 116
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top