Clone Name | bart34h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 445 ccgaccatcccgccgaccacctccctgccg 474 ||||||||||||||||| ||||| |||||| Sbjct: 11160314 ccgaccatcccgccgacgacctcgctgccg 11160343
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0042E12 Length = 164688 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 445 ccgaccatcccgccgaccacctccctgccg 474 ||||||||||||||||| ||||| |||||| Sbjct: 35136 ccgaccatcccgccgacgacctcgctgccg 35165
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1217_C01 Length = 100180 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 445 ccgaccatcccgccgaccacctccctgccg 474 ||||||||||||||||| ||||| |||||| Sbjct: 90220 ccgaccatcccgccgacgacctcgctgccg 90249
>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full insert sequence Length = 1731 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 445 ccgaccatcccgccgaccacctccctgccg 474 ||||||||||||||||| ||||| |||||| Sbjct: 800 ccgaccatcccgccgacgacctcgctgccg 829
>gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome 13, complete sequence Length = 208298 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 atgaagagtatacaaatagaa 178 ||||||||||||||||||||| Sbjct: 59500 atgaagagtatacaaatagaa 59480
>gb|AC124400.4| Mus musculus BAC clone RP24-357O21 from chromosome 14, complete sequence Length = 191219 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ctctcttccattctccaccaa 521 ||||||||||||||||||||| Sbjct: 101377 ctctcttccattctccaccaa 101357
>dbj|AK034788.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430039D04 product:mannose binding lectin, liver (A), full insert sequence Length = 1565 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ctctcttccattctccaccaa 521 ||||||||||||||||||||| Sbjct: 1318 ctctcttccattctccaccaa 1298
>emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chromosome 2, complete sequence Length = 180824 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 aatgtcatatgggtcaaaaga 248 ||||||||||||||||||||| Sbjct: 59635 aatgtcatatgggtcaaaaga 59655
>gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198060 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 tctcttccattctccaccaag 522 ||||||||||||||||||||| Sbjct: 117488 tctcttccattctccaccaag 117468
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 acatcatcgcgatgtttgcg 552 |||||||||||||||||||| Sbjct: 2034372 acatcatcgcgatgtttgcg 2034391
>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence Length = 241579 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ctctcttccattctccacca 520 |||||||||||||||||||| Sbjct: 20206 ctctcttccattctccacca 20225
>gb|AC012569.18| Homo sapiens chromosome , clone RP11-8H2, complete sequence Length = 153276 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 catataagctgaaacatgga 297 |||||||||||||||||||| Sbjct: 24584 catataagctgaaacatgga 24565
>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence Length = 223742 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 catggaaatgacctaaagac 311 |||||||||||||||||||| Sbjct: 68244 catggaaatgacctaaagac 68225
>emb|AL157932.21| Human DNA sequence from clone RP11-187A9 on chromosome 13 Contains part of a novel gene, the 5' end of the DGKH gene for diacylglycerol kinase eta, a mitogen-activated protein kinase 6 (MAPK6) pseudogene and 2 CpG islands, complete sequence Length = 67309 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tccaaacaaagcaacaatgt 277 |||||||||||||||||||| Sbjct: 4123 tccaaacaaagcaacaatgt 4142
>emb|AL133379.3| Human DNA sequence from clone RP1-230I3 on chromosome 6q22.1-22.33 Contains the 3' end of the gene for a novel protein similar to FLJ13018, complete sequence Length = 111764 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 caagtcaccatgttccctct 369 |||||||||||||||||||| Sbjct: 11221 caagtcaccatgttccctct 11240
>gb|AC118647.4| Homo sapiens chromosome 18, clone RP11-474O19, complete sequence Length = 71808 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 catataagctgaaacatgga 297 |||||||||||||||||||| Sbjct: 11244 catataagctgaaacatgga 11263
>gb|AC097380.2| Homo sapiens BAC clone RP11-336M17 from 4, complete sequence Length = 71641 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 gactctcttccattctccac 518 |||||||||||||||||||| Sbjct: 45322 gactctcttccattctccac 45341
>emb|BX322544.6| Zebrafish DNA sequence from clone DKEY-27N14 in linkage group 16, complete sequence Length = 102811 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 aacaatgtcatataagctga 289 |||||||||||||||||||| Sbjct: 60292 aacaatgtcatataagctga 60273
>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone BACR12P10, complete sequence Length = 186686 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 275 tgtcatataagctgaaacatggaaatga 302 ||||||| || ||||||||||||||||| Sbjct: 9723 tgtcataaaatctgaaacatggaaatga 9750
>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence Length = 193220 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 actctcttccattctccacc 519 |||||||||||||||||||| Sbjct: 112077 actctcttccattctccacc 112058
>emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 in linkage group 4, complete sequence Length = 153499 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attacattatcagatgtgtc 197 |||||||||||||||||||| Sbjct: 75409 attacattatcagatgtgtc 75390
>emb|CR751229.6| Zebrafish DNA sequence from clone CH211-116I17 in linkage group 4, complete sequence Length = 58988 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 attacattatcagatgtgtc 197 |||||||||||||||||||| Sbjct: 27794 attacattatcagatgtgtc 27775
>gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, region 92A1-92A2, BAC clone BACR48K23, complete sequence Length = 173564 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 275 tgtcatataagctgaaacatggaaatga 302 ||||||| || ||||||||||||||||| Sbjct: 172420 tgtcataaaatctgaaacatggaaatga 172447
>emb|CT573051.1| Medicago truncatula chromosome 5 clone mth2-15e15, COMPLETE SEQUENCE Length = 117939 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 aaacaaagcaacaatgtcat 280 |||||||||||||||||||| Sbjct: 81957 aaacaaagcaacaatgtcat 81938
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete sequence Length = 247876 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 275 tgtcatataagctgaaacatggaaatga 302 ||||||| || ||||||||||||||||| Sbjct: 67882 tgtcataaaatctgaaacatggaaatga 67909
>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence Length = 206439 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aacaagaagatgatccacat 84 |||||||||||||||||||| Sbjct: 71346 aacaagaagatgatccacat 71365
>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete sequence Length = 224628 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ctctcttccattctccacca 520 |||||||||||||||||||| Sbjct: 81735 ctctcttccattctccacca 81716 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,925,503 Number of Sequences: 3902068 Number of extensions: 4925503 Number of successful extensions: 92919 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92803 Number of HSP's gapped (non-prelim): 116 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)