Clone Information

BLAST Search Result

Clone Name	bart34g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VGLG_HHV2H (P13290) Glycoprotein G	37	0.025
2	UBP28_MOUSE (Q5I043) Ubiquitin carboxyl-terminal hydrolase 28 (E...	36	0.073
3	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	36	0.073
4	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	35	0.16
5	UBP28_HUMAN (Q96RU2) Ubiquitin carboxyl-terminal hydrolase 28 (E...	34	0.28
6	FGD1_HUMAN (P98174) FYVE, RhoGEF and PH domain-containing protei...	33	0.47
7	SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor ...	33	0.47
8	MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p...	32	0.81
9	CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog	32	0.81
10	HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor (Histid...	32	1.4
11	LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)	32	1.4
12	FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protei...	32	1.4
13	CD2_HORSE (P37998) T-cell surface antigen CD2 precursor	31	1.8
14	SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-a...	31	1.8
15	ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: ...	31	1.8
16	Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1	31	2.4
17	PI3R4_RAT (P0C0R5) Phosphoinositide 3-kinase regulatory subunit ...	31	2.4
18	PI3R4_PONPY (Q5R9I3) Phosphoinositide 3-kinase regulatory subuni...	31	2.4
19	PI3R4_MOUSE (Q8VD65) Phosphoinositide 3-kinase regulatory subuni...	31	2.4
20	HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated...	31	2.4
21	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	31	2.4
22	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	31	2.4
23	BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTP...	30	3.1
24	EMX2_HUMAN (Q04743) Homeobox protein EMX2 (Empty spiracles homol...	30	3.1
25	PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein...	30	3.1
26	EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)	30	3.1
27	RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (E...	30	4.0
28	RRP3_USTMA (Q4P3U9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)	30	4.0
29	ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4....	30	4.0
30	SNX41_CRYNE (Q5KKB9) Sorting nexin-41	30	4.0
31	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	30	4.0
32	K1C13_RAT (Q6IFV4) Keratin, type I cytoskeletal 13 (Cytokeratin-...	30	5.3
33	PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:...	30	5.3
34	K1HB_HUMAN (Q14525) Keratin, type I cuticular Ha3-II (Hair kerat...	30	5.3
35	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	30	5.3
36	EMX2_MOUSE (Q04744) Homeobox protein EMX2 (Empty spiracles homol...	30	5.3
37	RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anteri...	29	6.9
38	SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysi...	29	6.9
39	PI3R4_HUMAN (Q99570) Phosphoinositide 3-kinase regulatory subuni...	29	6.9
40	PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presyna...	29	6.9
41	EFTS_MYCGA (Q7NC21) Elongation factor Ts (EF-Ts)	29	6.9
42	IE68_PRVKA (P24827) Immediate-early protein RSP40	29	6.9
43	AMEL_TACAC (O97647) Amelogenin (Fragment)	29	9.0
44	SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-a...	29	9.0
45	GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; ...	29	9.0
46	ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop...	29	9.0
47	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	29	9.0
48	CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor	29	9.0

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTH---RPTNPNPKAHPPGP 113
           PP  PA    P T TH   RPT P P+  PPGP
Sbjct: 447 PPTTPAPTTPPPTSTHATPRPTTPGPQTTPPGP 479

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>UBP28_MOUSE (Q5I043) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 28)
           (Ubiquitin-specific-processing protease 28)
           (Deubiquitinating enzyme 28)
          Length = 1051

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +2

Query: 287 DDLRSRYAHHHHRRDALLGQLRAAFPAMDPQLLERALEASGDDLDDAIKSLKELHLMESN 466
           DD       H      LL QLR      DP  L  AL+AS  D+  A+  L +  + E +
Sbjct: 8   DDSAGAADGHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDQRVKEPS 67

Query: 467 QANPSATGSTFENGPTA 517
               +A  S  E   T+
Sbjct: 68  HDTTAAEPSEVEESATS 84

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTH---RPTNPNPKAHPP 107
           P PPA +   STPTH    P  P P+AHPP
Sbjct: 216 PKPPATKPPTSTPTHPKPTPHTPYPQAHPP 245

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP  RR PS P  R  +P P+   P P
Sbjct: 557 PPPPPRRRRSPSLPRRRSPSPPPRRRSPSP 586

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>UBP28_HUMAN (Q96RU2) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 28)
           (Ubiquitin-specific-processing protease 28)
           (Deubiquitinating enzyme 28)
          Length = 1077

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +2

Query: 287 DDLRSRYAHHHHRRDALLGQLRAAFPAMDPQLLERALEASGDDLDDAIKSLKELHLMESN 466
           DD       H      LL QLR      DP  L  AL+AS  D+  A+  L +  + E +
Sbjct: 8   DDAAGAADGHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPS 67

Query: 467 QANPSATGSTFE 502
           Q   +   S  E
Sbjct: 68  QDTVATEPSEVE 79

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>FGD1_HUMAN (P98174) FYVE, RhoGEF and PH domain-containing protein 1|
           (Faciogenital dysplasia 1 protein) (Zinc finger FYVE
           domain-containing protein 3) (Rho/Rac guanine nucleotide
           exchange factor FGD1) (Rho/Rac GEF)
          Length = 961

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 21  HPPNPPAVRRDPSTPTHRPT-NPNPKAHPPGP 113
           HP  P  +R DP  PT  P+  P+P    PGP
Sbjct: 126 HPEGPQRLRSDPGPPTETPSQRPSPLKRAPGP 157

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>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)|
          Length = 485

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP+PP   R PS P   P+ P P   PP P
Sbjct: 241 PPSPPPSPRPPSPPPPSPSPPPPPPPPPPP 270

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>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 27   PNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
            P PP V++ P  PT  PT P     PPGP
Sbjct: 2210 PVPPPVKQPPLPPTISPTAPTSWTLPPGP 2238

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>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog|
          Length = 319

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 24  PPNPPAV---RRDPSTPTHRPTNPNPKAHPPGP 113
           PP  PAV   R +P +P   P  P P+ +PP P
Sbjct: 52  PPTSPAVPQTRENPPSPPTSPAAPQPRENPPSP 84



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +3

Query: 21  HPPNPPAV------RRDPSTPTHRPTNPNPKAHPPGP 113
           +PP+PP        R +P +P   P  P P+ +PP P
Sbjct: 80  NPPSPPTSPAAPQPRENPPSPPTSPAAPQPRENPPSP 116



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +3

Query: 21  HPPNPPAV------RRDPSTPTHRPTNPNPKAHPPGP 113
           +PP+PP        R +P +P   P  P P+ +PP P
Sbjct: 64  NPPSPPTSPAAPQPRENPPSPPTSPAAPQPRENPPSP 100

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>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG) (Fragment)
          Length = 526

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 21  HPPNPPAVRRDPSTPT---HRPTNPNPKAHPP-GP 113
           HPP+ P  R  P  P    H P  P P  HPP GP
Sbjct: 353 HPPHGPPPRHPPHGPPPHGHPPHGPPPHGHPPHGP 387



 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +3

Query: 21  HPPNPPAVRRDPS--TPTHRPTNPNPKAHPP-GP 113
           HP  PP     P    P H P  P P  HPP GP
Sbjct: 344 HPHGPPPHGHPPHGPPPRHPPHGPPPHGHPPHGP 377

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>LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)|
          Length = 323

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP     PS P   P+ P P A PP P
Sbjct: 175 PPPPPPSPPPPSPPPPSPSPPPPPASPPPP 204



 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           P+PP     PS P   P +P P + PP P
Sbjct: 150 PSPPPPPPPPSPPPPSPPSPPPPSPPPPP 178

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>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1|
           (Faciogenital dysplasia 1 protein homolog) (Zinc finger
           FYVE domain-containing protein 3) (Rho/Rac guanine
           nucleotide exchange factor FGD1) (Rho/Rac GEF)
          Length = 960

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 21  HPPNPPAVRRDPSTPTHRP-TNPNPKAHPPGP 113
           HP  P  +R DP  PT  P   P+P    PGP
Sbjct: 126 HPEGPQRLRSDPGPPTEIPGPRPSPLKRAPGP 157

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>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor|
          Length = 347

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  AVLHPPNPPAVRRDPSTPTHRPTNPNPKAHPPG 110
           A   PP PP+ R  P  P HRP  P  +  PPG
Sbjct: 273 AASQPPPPPSHR--PQAPGHRPQVPGHRPLPPG 303

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>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +3

Query: 15  VLHPP----NPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           V+HPP    +PPA    P TP   P  P P  HPP P
Sbjct: 304 VVHPPTSGVHPPAPGVHPPTPGVHP--PAPGVHPPAP 338



 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 18  LHPP----NPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           +HPP    +PPA    P TP   P  P P  HPP P
Sbjct: 333 VHPPAPGVHPPAPGVHPPTPGVHP--PAPGVHPPAP 366

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>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 431

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PPA +  P  P   P  P P   PP P
Sbjct: 343 PPQPPAAQAPPPPPPPPPPPPPPPPPPPPP 372

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>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 278 IFADDLRSRYAHHHHRRDALLGQLRAAFPAMDPQLLERALEASGDDL 418
           I    L S Y HH HRR+           +M+PQ LER L A+ D L
Sbjct: 219 IIGRPLTSSYPHHQHRRNL----------SMEPQELERNLVAAVDGL 255

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>PI3R4_RAT (P0C0R5) Phosphoinositide 3-kinase regulatory subunit 4 (EC|
           2.7.11.1) (PI3-kinase regulatory subunit 4)
          Length = 1357

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
 Frame = +2

Query: 269 SSSIF-----ADDLRSRYAHHHHRRDALLGQLRAAFPAMDP---QLLERAL-EASGDDLD 421
           S SIF     + D+ S + H H R+    G L    P  DP   QLL++ L +   ++ +
Sbjct: 724 SRSIFDYALRSKDIASLFRHLHMRQKKRNGSLLDCPPPEDPAIAQLLKKLLSQGMTEEEE 783

Query: 422 DAIKSLKELHLMESNQANPSA 484
           D + +LK+  +M+SN+A  +A
Sbjct: 784 DKLLALKDF-MMKSNRAKANA 803

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>PI3R4_PONPY (Q5R9I3) Phosphoinositide 3-kinase regulatory subunit 4 (EC|
           2.7.11.1) (PI3-kinase regulatory subunit 4)
          Length = 1357

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = +2

Query: 269 SSSIF-----ADDLRSRYAHHHHRRDALLGQLRAAFPAMDP---QLLERAL-EASGDDLD 421
           S SIF     + D+ S + H H R+    G L    P  DP   QLL++ L +   +D +
Sbjct: 724 SRSIFDYALRSKDITSLFRHLHMRQKKRNGSLPDCPPPEDPAIAQLLKKLLSQGMTEDEE 783

Query: 422 DAIKSLKELHLMESNQA 472
           D + +LK+  +M+SN+A
Sbjct: 784 DKLLALKDF-MMKSNKA 799

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>PI3R4_MOUSE (Q8VD65) Phosphoinositide 3-kinase regulatory subunit 4 (EC|
           2.7.11.1) (PI3-kinase regulatory subunit 4)
          Length = 1357

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
 Frame = +2

Query: 269 SSSIF-----ADDLRSRYAHHHHRRDALLGQLRAAFPAMDP---QLLERAL-EASGDDLD 421
           S SIF     + D+ S + H H R+    G L    P  DP   QLL++ L +   ++ +
Sbjct: 724 SRSIFDYALRSKDIASLFRHLHMRQKKRNGSLLDCPPPEDPTIAQLLKKLLSQGMTEEEE 783

Query: 422 DAIKSLKELHLMESNQANPSA 484
           D + +LK+  +M+SN+A  +A
Sbjct: 784 DKLLALKDF-MMKSNRAKANA 803

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>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2)
          Length = 889

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP     P+ P  +P  P P A PPGP
Sbjct: 23  PPPPP-----PAPPQQQPPPPPPPAPPPGP 47

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PPNPPA-VRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP+ V   P+ P+  P +P P A PP P
Sbjct: 238 PPAPPSPVPPSPAPPSPAPPSPKPPAPPPPP 268



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP  R  P  P + P  P+P + PP P
Sbjct: 270 PPPPPPPR--PPFPANTPMPPSPPSPPPSP 297

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPT-NPNPKAHPPGP 113
           PP PP  RR P+ P  R T +P P+   P P
Sbjct: 582 PPPPPRRRRSPTPPPRRRTPSPPPRRRSPSP 612

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>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  NPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           NPPA   +PS P   PT   P A+PP P
Sbjct: 251 NPPAPAANPSAPAATPT--GPAANPPAP 276

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>EMX2_HUMAN (Q04743) Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty|
           spiracles-like protein 2)
          Length = 252

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 12  AVLHPPNPPAVRRDPSTPTHR-PTNPNPKAHPPGP 113
           AV HPPN PAV   P  P H    +P P +H P P
Sbjct: 74  AVSHPPN-PAVPVHPVPPPHALAAHPLPSSHSPHP 107

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>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein|
           (PDCD6-interacting protein) (ALG-2-interacting protein
           1) (Hp95)
          Length = 868

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 21  HPPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           H P PP     P+  T  PT P P A PP P
Sbjct: 735 HAPTPPT----PAPRTMPPTKPQPPARPPPP 761

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>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           P PP     P  PTH    P P  + P P
Sbjct: 159 PTPPTYTPSPKPPTHPTPKPTPPTYTPSP 187



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
 Frame = +3

Query: 21  HP---PNPPAVRRDPSTPTHRPTNP--NPKAHPPGP 113
           HP   P PP     P  PT +PT P   P   PP P
Sbjct: 173 HPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTP 208



 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTHRPTNP--NPKAHPPGP 113
           P PP     P  PT +PT P   P   PP P
Sbjct: 127 PTPPTYTPSPKPPTPKPTPPTYTPSPKPPTP 157

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>RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (Enhancer factor|
           C) (EF-C)
          Length = 979

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPT----------NPNPKAHPPG 110
           PP PPA  + P  PT   T          +P P+A PPG
Sbjct: 31  PPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPG 69

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>RRP3_USTMA (Q4P3U9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 551

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 499 KCGTSGRRVSLI*LHEVQLLQTLDCIIQIISRRFKG 392
           + G SGR V+L+  ++V+LLQ ++ +I +    F G
Sbjct: 436 RAGRSGRSVTLVTQYDVELLQRIEAVIGLKMTEFPG 471

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>ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4.21.-)|
           (Fragment)
          Length = 232

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 24  PPNPPAV--RRDPSTPTHRPTNPNPKAHPPGP 113
           PP PPA   R  PS P   P  P+P   PP P
Sbjct: 147 PPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPP 178

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>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 16/46 (34%)
 Frame = +3

Query: 24  PPNPPAVRRDPST----------PTHRPTNPNPKAHP------PGP 113
           P  PP V R PS+          PTHR + P+P  HP      PGP
Sbjct: 22  PSLPPPVPRKPSSLVSAASGSPPPTHRASFPDPARHPKMGATVPGP 67

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHP-----PGP 113
           PP PP     P  P   P NP   +HP     PGP
Sbjct: 24  PPPPPPAPPQPQPPPAPPPNPTTPSHPESADEPGP 58

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>K1C13_RAT (Q6IFV4) Keratin, type I cytoskeletal 13 (Cytokeratin-13) (CK-13)|
           (Keratin-13) (K13) (Type I keratin Ka13)
          Length = 438

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 230 ATTNMSAVVCGKRSSSIFADDLRSRYAHHHHRRDALLGQLRAAFPAMDPQLLERA-LEAS 406
           ATT+ + +V    ++ + ADD R +Y +    R ++   +      +D   L +  LE  
Sbjct: 161 ATTDNNRIVLEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLAKTDLEMQ 220

Query: 407 GDDLDDAIKSLKELHLMESNQANPSATG 490
            + L++ +  LK+ H  E  + +  A G
Sbjct: 221 IESLNEELAYLKKNHEEEMKEFSNQAVG 248

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>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PPNP-PAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP P P   R P  P   P  P+P   PPGP
Sbjct: 643 PPGPAPPGARPPPGPPPPPPGPSPPRPPPGP 673

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>K1HB_HUMAN (Q14525) Keratin, type I cuticular Ha3-II (Hair keratin, type I|
           Ha3-II)
          Length = 404

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 269 SSSIFADDLRSRYAHHHHRRDALLGQLRAAFPAMDPQLLERA-LEASGDDLDDAIKSLKE 445
           ++ + ADD R++Y      R  +   + +    +D   L R+ LEA  + L + + SLK+
Sbjct: 133 NAKLAADDFRTKYQTEQSLRQLVESDINSLRRILDELTLCRSDLEAQMESLKEELLSLKQ 192

Query: 446 LHLMESN 466
            H  E N
Sbjct: 193 NHEQEVN 199

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 21  HPPNPPAVRRDPSTPTHRPT--NPNPKAH-PPGP 113
           H P PP  R  P T  H P    P+P  H PP P
Sbjct: 223 HQPQPPTHRHAPPTHRHAPPTHQPSPLRHLPPSP 256



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP+PP     P    H P  P+ +  PP P
Sbjct: 564 PPSPPTFSAPPPRQIHSPPPPHRQPRPPTP 593



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTHRPTNPN----PKAHPPGP 113
           P+PP+    P  PTHR   P     P  H P P
Sbjct: 216 PSPPSRGHQPQPPTHRHAPPTHRHAPPTHQPSP 248

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>EMX2_MOUSE (Q04744) Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty|
           spiracles-like protein 2)
          Length = 253

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 12  AVLHPPNPPAVRRDPSTPTHR-PTNPNPKAHPPGP 113
           AV HPPN PAV   P  P H    +P P  H P P
Sbjct: 75  AVSHPPN-PAVPVHPVPPPHALAAHPLPSLHSPHP 108

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>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural|
           fold homeobox protein)
          Length = 346

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           PP PP +   P  P  +P  P P ++P GP
Sbjct: 278 PPPPPFLNSPPLGPGLQPLAPPPPSYPCGP 307

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>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
            SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
            complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 12   AVLHPPNPPAVRRDPST-PTHRPTNPNPKAHPP 107
            A L PP PPA    P+  P  RP++P P   PP
Sbjct: 1129 APLRPPEPPAGPPAPAPRPDERPSSPIPLLPPP 1161

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>PI3R4_HUMAN (Q99570) Phosphoinositide 3-kinase regulatory subunit 4 (EC|
           2.7.11.1) (PI3-kinase regulatory subunit 4) (PI3-kinase
           p150 subunit) (Phosphoinositide 3-kinase adaptor
           protein)
          Length = 1357

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = +2

Query: 269 SSSIF-----ADDLRSRYAHHHHRRDALLGQLRAAFPAMDP---QLLERAL-EASGDDLD 421
           S SIF     + D+ S + H H R+    G L    P  DP   QLL++ L +   ++ +
Sbjct: 724 SRSIFDYALRSKDITSLFRHLHMRQKKRNGSLPDCPPPEDPAIAQLLKKLLSQGMTEEEE 783

Query: 422 DAIKSLKELHLMESNQA 472
           D + +LK+  +M+SN+A
Sbjct: 784 DKLLALKDF-MMKSNKA 799

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>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 24   PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
            PP PP     PST +  PT P P A  P P
Sbjct: 2352 PPPPPPPPPSPSTSSPPPTPPLPPATSPKP 2381

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>EFTS_MYCGA (Q7NC21) Elongation factor Ts (EF-Ts)|
          Length = 292

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +2

Query: 335 LLGQLRAAFPA--MDPQLLERALEASGDDLDDAIKSLKE 445
           L+ QLRA+  A  MD    ++ALEA+ +D+D AIK L+E
Sbjct: 7   LIKQLRASTQAGFMD---CKKALEATNNDIDQAIKWLRE 42

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>IE68_PRVKA (P24827) Immediate-early protein RSP40|
          Length = 364

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  PNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           P+PP    DP  P  RPT P P + PP P
Sbjct: 13  PSPPFSPVDPPGP--RPTTPVPGSSPPSP 39

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>AMEL_TACAC (O97647) Amelogenin (Fragment)|
          Length = 121

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPGP 113
           P   P   + P  PTHRP  P    HP  P
Sbjct: 62  PGQQPFQPQFPQKPTHRPIQPQAPVHPMPP 91

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>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
 Frame = +3

Query: 18  LHPP----NPPAVRRDPSTP-THRPTN----PNPKAHPPGP 113
           +HPP    +PPA    P  P  H PT+    P P  HPP P
Sbjct: 301 VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAP 341

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>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 536

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +3

Query: 6   LLAVLHPPNPPAVRRDPSTP-----THRPTNPNPKAHPPGP 113
           +L   +PP PP +  DPS+P     T  P  P P  H P P
Sbjct: 206 VLPKTNPPKPPVLPPDPSSPLIDLLTEEPP-PYPGGHGPPP 245

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>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHR----PTNPNPKAHPPGP 113
           PP PP  R  P+  TH     PT     AHPP P
Sbjct: 442 PPPPPYGRLLPNNNTHPGPFPPTGGQSTAHPPAP 475

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +3

Query: 24   PPNPPAV------RRDPSTPTHRPTNPNPKAHPPGP 113
            PP P  +      R DP +P   P  P  K  PPGP
Sbjct: 1199 PPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGP 1234

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>CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor|
          Length = 351

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 24  PPNPPAVRRDPSTPTHRPTNPNPKAHPPG 110
           P NP A +  P  P HR   P+ +  PPG
Sbjct: 273 PQNPAASQHPPPPPGHRSQAPSHRPLPPG 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,005,552
Number of Sequences: 219361
Number of extensions: 798193
Number of successful extensions: 5634
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5447
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result