ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart34g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017489.1| Zea mays clone EL01N0413B02.c mRNA sequence 86 1e-13
2gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, comple... 86 1e-13
3gb|AY104704.1| Zea mays PCO133361 mRNA sequence 86 1e-13
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
5dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
6dbj|AK073896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
9dbj|AK105238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
13ref|NM_185009.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.46
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.46
15gb|AY289941.1| Aplysia californica glutamate receptor subunit pr... 44 0.46
16gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 44 0.46
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
18dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.46
19emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 44 0.46
20gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.8
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.8
23emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 i... 42 1.8
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
25emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.8
26ref|XM_549989.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.1
27ref|XM_474031.1| Oryza sativa (japonica cultivar-group), predic... 40 7.1
28ref|XM_519186.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 7.1
29ref|NM_192802.1| Oryza sativa (japonica cultivar-group), predic... 40 7.1
30gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
31ref|XM_601753.2| PREDICTED: Bos taurus similar to CG12600-PA (LO... 40 7.1
32gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 40 7.1
33gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, comp... 40 7.1
34gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chrom... 40 7.1
35gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, comp... 40 7.1
36gb|AY596266.1| Triticum aestivum cultivar Chinese Spring polyphe... 40 7.1
37gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, com... 40 7.1
38emb|AL589951.6| Human DNA sequence from clone RP11-55F17 on chro... 40 7.1
39gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.1
40gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.1
41emb|BX323824.17| Zebrafish DNA sequence from clone DKEY-37F18 in... 40 7.1
42emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on ch... 40 7.1
43emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4,... 40 7.1
44gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromo... 40 7.1
45emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, ... 40 7.1
46emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, B... 40 7.1
47gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.1
48dbj|AK080752.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 7.1
49gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.1
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
51dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
52gb|AY183658.1| Oryza sativa (indica cultivar-group) putative Lon... 40 7.1
53dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.1
54dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
55dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13,... 40 7.1
56dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
57dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
58dbj|AK120021.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
59dbj|AK104741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
60dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
61dbj|AK099507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
62dbj|AK060110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
63tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for c... 40 7.1
64emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.1
65emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.1
66emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.1
67emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed ... 40 7.1
68gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 7.1
69gb|AC139158.3| Mus musculus BAC clone RP24-77I7 from 8, complete... 40 7.1
70gb|AC002064.1|HSAC002064 Human BAC clone RG016J04 from 7q21, com... 40 7.1
71dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1 
>gb|BT017489.1| Zea mays clone EL01N0413B02.c mRNA sequence
          Length = 1134

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                              
Query: 241 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 291
           |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 68  catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 118



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 358 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 417
           |||||| | ||||||||| ||| ||||||| |  || || ||||| ||||||||||| ||
Sbjct: 254 cttccccgacatggatccacagttgcttgaaaaagctctggaagcatctggagatgactt 313

                                   
Query: 418 ggatgatgcaatcaagagtttgaa 441
           ||||  |||||| || ||||||||
Sbjct: 314 ggattctgcaataaaaagtttgaa 337
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>gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, complete sequence
          Length = 1366

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                               
Query: 241  catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 291
            |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1093 catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 1043



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                       
Query: 358 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 417
           |||||| | ||||||||||||| ||||||| |  || || ||||| |||||||| || ||
Sbjct: 898 cttccccgacatggatccccagttgcttgaaaaagctctggaagcatctggagacgactt 839

                                   
Query: 418 ggatgatgcaatcaagagtttgaa 441
           ||||  ||| || |||||||||||
Sbjct: 838 ggattctgcgataaagagtttgaa 815
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>gb|AY104704.1| Zea mays PCO133361 mRNA sequence
          Length = 1333

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                              
Query: 241 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 291
           |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 270 catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 320



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 358 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 417
           |||||| | ||||||||| ||| ||||||| |  || || ||||| ||||||||||| ||
Sbjct: 456 cttccccgacatggatccacagttgcttgaaaaagctctggaagcatctggagatgactt 515

                                   
Query: 418 ggatgatgcaatcaagagtttgaa 441
           ||||  |||||| || ||||||||
Sbjct: 516 ggattctgcaataaaaagtttgaa 539
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                      
Query: 241      catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 294
                |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct: 25803160 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 25803107



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 395      cttgaagcgtctggagatgatttggatgatgcaatcaagagttt 438
                ||||| || ||||||||||||||||||   ||||| ||||||||
Sbjct: 25801914 cttgatgcttctggagatgatttggattcagcaataaagagttt 25801871
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>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0416A11
          Length = 171519

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                   
Query: 241   catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 294
             |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct: 85364 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 85311



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 395   cttgaagcgtctggagatgatttggatgatgcaatcaagagttt 438
             ||||| || ||||||||||||||||||   ||||| ||||||||
Sbjct: 84118 cttgatgcttctggagatgatttggattcagcaataaagagttt 84075
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>dbj|AK073896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G12, full
           insert sequence
          Length = 1456

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                 
Query: 241 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 294
           |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct: 201 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 254



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 367 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 426
           ||||||||||||| |||| ||  | || ||||| || ||||||||||||||||||   ||
Sbjct: 372 catggatccccagttgctcgaaggagctcttgatgcttctggagatgatttggattcagc 431

                       
Query: 427 aatcaagagttt 438
           ||| ||||||||
Sbjct: 432 aataaagagttt 443
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                           
Query: 241     catgtctgcggtagtctgcggcaagaggtcctcctccatcttcg 284
               ||||||||| ||||| || || ||||||||||||||||||||||
Sbjct: 4717962 catgtctgccgtagtgtgtgggaagaggtcctcctccatcttcg 4718005



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       aaccaacccaaacccaaaag 96
                ||||||||||||||||||||
Sbjct: 32686706 aaccaacccaaacccaaaag 32686687
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>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1572_F02
          Length = 93626

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 241   catgtctgcggtagtctgcggcaagaggtcctcctccatcttcg 284
             ||||||||| ||||| || || ||||||||||||||||||||||
Sbjct: 90034 catgtctgccgtagtgtgtgggaagaggtcctcctccatcttcg 90077
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>dbj|AK105238.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B02, full
           insert sequence
          Length = 1333

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 367 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 426
           ||||||||||||| | ||||| || || ||||| || |||||||||||| | |||  |||
Sbjct: 266 catggatccccagttacttgaaagagctcttgaggcatctggagatgatatagattctgc 325

                                 
Query: 427 aatcaagagtttgaaggagctg 448
            || ||||||||||| ||||||
Sbjct: 326 tataaagagtttgaacgagctg 347
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>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06,
             complete sequence
          Length = 174019

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 260   ggcaagaggtcctcctccatcttcg 284
             |||||||||||||||||||||||||
Sbjct: 73889 ggcaagaggtcctcctccatcttcg 73913
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 260      ggcaagaggtcctcctccatcttcg 284
                |||||||||||||||||||||||||
Sbjct: 15902365 ggcaagaggtcctcctccatcttcg 15902389
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 260      ggcaagaggtcctcctccatcttcg 284
                |||||||||||||||||||||||||
Sbjct: 15910606 ggcaagaggtcctcctccatcttcg 15910630
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>ref|NM_185009.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 cggcggcgagacgcggcgggaggagg 212
           |||||||||| |||||||||||||||
Sbjct: 58  cggcggcgagtcgcggcgggaggagg 33
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 187      cggcggcgagacgcggcgggaggagg 212
                |||||||||| |||||||||||||||
Sbjct: 32139998 cggcggcgagtcgcggcgggaggagg 32140023



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 311      caccaccaccaccgccgggacgcg 334
                ||||||||||||||||| ||||||
Sbjct: 28871582 caccaccaccaccgccgcgacgcg 28871559



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      cggcggcgagacgcggcgggagga 210
                ||||||| ||||||||||||||||
Sbjct: 10870653 cggcggccagacgcggcgggagga 10870676
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>gb|AY289941.1| Aplysia californica glutamate receptor subunit protein GluR3 mRNA,
           complete cds
          Length = 2800

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 438 tgaaggagctgcacctcatgga 459
           ||||||||||||||||||||||
Sbjct: 600 tgaaggagctgcacctcatgga 621
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
              sequence
          Length = 178158

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 187    cggcggcgagacgcggcgggaggagg 212
              |||||||||| |||||||||||||||
Sbjct: 141123 cggcggcgagtcgcggcgggaggagg 141148
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 187      cggcggcgagacgcggcgggaggagg 212
                |||||||||| |||||||||||||||
Sbjct: 32230510 cggcggcgagtcgcggcgggaggagg 32230535



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 311      caccaccaccaccgccgggacgcg 334
                ||||||||||||||||| ||||||
Sbjct: 28963004 caccaccaccaccgccgcgacgcg 28962981



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      cggcggcgagacgcggcgggagga 210
                ||||||| ||||||||||||||||
Sbjct: 10868754 cggcggccagacgcggcgggagga 10868777
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 338     ctcggccagctccgggccgcct 359
               ||||||||||||||||||||||
Sbjct: 3762156 ctcggccagctccgggccgcct 3762135
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 31     atccgcccgccgtccgtcgcga 52
              ||||||||||||||||||||||
Sbjct: 332151 atccgcccgccgtccgtcgcga 332172
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   ctcggccagctccgggccgcc 358
             |||||||||||||||||||||
Sbjct: 89925 ctcggccagctccgggccgcc 89905
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 187      cggcggcgagacgcggcgggaggag 211
                |||||||||||||| ||||||||||
Sbjct: 22704994 cggcggcgagacgccgcgggaggag 22705018
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 217   cgacgagggcggcgccaccaccaacatgt 245
             ||||| ||||||||||||| |||||||||
Sbjct: 82970 cgacgtgggcggcgccaccgccaacatgt 82998
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>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19,
             complete sequence
          Length = 154360

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    accgcccaaccaacccaaacc 90
             |||||||||||||||||||||
Sbjct: 63092 accgcccaaccaacccaaacc 63072
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 187      cggcggcgagacgcggcgggaggag 211
                |||||||||||||| ||||||||||
Sbjct: 22633185 cggcggcgagacgccgcgggaggag 22633209
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>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 187   cggcggcgagacgcggcgggaggag 211
             |||||||||||||| ||||||||||
Sbjct: 16844 cggcggcgagacgccgcgggaggag 16868
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>ref|XM_549989.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3562

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 cggggacgaggagggaggcggcgg 154
           |||||| |||||||||||||||||
Sbjct: 159 cggggaggaggagggaggcggcgg 136
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>ref|XM_474031.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggtcctcctccatcttcgcg 286
           ||||||||||||||||||||
Sbjct: 193 ggtcctcctccatcttcgcg 174
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>ref|XM_519186.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA A330021E22
            (LOC463519), mRNA
          Length = 2901

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  cgccgggacgcgctcctcgg 342
            ||||||||||||||||||||
Sbjct: 2552 cgccgggacgcgctcctcgg 2533
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>ref|NM_192802.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 732

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 gctacgcgcaccaccaccac 322
           ||||||||||||||||||||
Sbjct: 332 gctacgcgcaccaccaccac 313
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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 311    caccaccaccaccgccgggacgcg 334
              ||||||||||||||||| ||||||
Sbjct: 136894 caccaccaccaccgccgcgacgcg 136871
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>ref|XM_601753.2| PREDICTED: Bos taurus similar to CG12600-PA (LOC523454), mRNA
          Length = 5140

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  acgcgctcctcggccagctc 349
            ||||||||||||||||||||
Sbjct: 1586 acgcgctcctcggccagctc 1567
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 311   caccaccaccaccgccgggacgcg 334
             ||||||||||||||||| ||||||
Sbjct: 54877 caccaccaccaccgccgcgacgcg 54854
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>gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, complete sequence
          Length = 190776

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   cgccgggacgcgctcctcgg 342
             ||||||||||||||||||||
Sbjct: 76574 cgccgggacgcgctcctcgg 76593
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>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete
              sequence
          Length = 210978

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    cgccgggacgcgctcctcgg 342
              ||||||||||||||||||||
Sbjct: 194725 cgccgggacgcgctcctcgg 194706
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>gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, complete sequence
          Length = 130280

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   cgccgggacgcgctcctcgg 342
             ||||||||||||||||||||
Sbjct: 89306 cgccgggacgcgctcctcgg 89325
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>gb|AY596266.1| Triticum aestivum cultivar Chinese Spring polyphenol oxidase mRNA,
           partial cds
          Length = 1866

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 321 accgccgggacgcgctcctcggcc 344
           |||||||||||| |||||||||||
Sbjct: 146 accgccgggacgtgctcctcggcc 169
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>gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, complete sequence
          Length = 203942

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaccaacccaaacccaaaag 96
             ||||||||||||||||||||
Sbjct: 47512 aaccaacccaaacccaaaag 47493
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>emb|AL589951.6| Human DNA sequence from clone RP11-55F17 on chromosome 13, complete
             sequence
          Length = 55627

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   ctggttccacatttgaaaat 505
             ||||||||||||||||||||
Sbjct: 37918 ctggttccacatttgaaaat 37899
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 338     ctcggccagctccgggccgccttc 361
               |||||||||||||| |||||||||
Sbjct: 2867283 ctcggccagctccgcgccgccttc 2867306
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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
              from chromosome 3, complete sequence
          Length = 127348

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    cggcggcgagacgcggcgggagga 210
              ||||||| ||||||||||||||||
Sbjct: 110376 cggcggccagacgcggcgggagga 110353
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>emb|BX323824.17| Zebrafish DNA sequence from clone DKEY-37F18 in linkage group 25,
             complete sequence
          Length = 168743

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ggcccttgaagcgtctggag 410
             ||||||||||||||||||||
Sbjct: 61307 ggcccttgaagcgtctggag 61326
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>emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on chromosome 8, complete
             sequence
          Length = 221012

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaccaacccaaacccaaaag 96
             ||||||||||||||||||||
Sbjct: 41564 aaccaacccaaacccaaaag 41545
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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
              complete sequence
          Length = 159502

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    ggtcctcctccatcttcgcg 286
              ||||||||||||||||||||
Sbjct: 145624 ggtcctcctccatcttcgcg 145643
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>gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromosome 7, complete
              sequence
          Length = 160056

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    cgccgggacgcgctcctcgg 342
              ||||||||||||||||||||
Sbjct: 100325 cgccgggacgcgctcctcgg 100344
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>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59
          Length = 199199

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgcaatcaagagtttgaagg 443
             ||||||||||||||||||||
Sbjct: 61576 tgcaatcaagagtttgaagg 61557
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>emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20 (ESSAII
             project)
          Length = 97006

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgcaatcaagagtttgaagg 443
             ||||||||||||||||||||
Sbjct: 20044 tgcaatcaagagtttgaagg 20025
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    ctacgacgagggcggcgcca 233
              ||||||||||||||||||||
Sbjct: 815130 ctacgacgagggcggcgcca 815149
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>dbj|AK080752.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930040A11 product:unclassifiable, full insert
            sequence
          Length = 2591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   cccaaccaacccaaacccaa 93
            ||||||||||||||||||||
Sbjct: 1841 cccaaccaacccaaacccaa 1822
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ggctacgacgagggcggcgc 231
               ||||||||||||||||||||
Sbjct: 4831766 ggctacgacgagggcggcgc 4831747
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 267      ggtcctcctccatcttcgcg 286
                ||||||||||||||||||||
Sbjct: 32376035 ggtcctcctccatcttcgcg 32376054
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 131     cggggacgaggagggaggcggcgg 154
               |||||| |||||||||||||||||
Sbjct: 1420850 cggggaggaggagggaggcggcgg 1420827
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>gb|AY183658.1| Oryza sativa (indica cultivar-group) putative Lon2 protease mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 2965

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 cggcggcgagacgcggcgggagga 210
           ||||||| ||||||||||||||||
Sbjct: 124 cggcggccagacgcggcgggagga 101
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    ctcctcggccagctccgggc 354
              ||||||||||||||||||||
Sbjct: 977460 ctcctcggccagctccgggc 977479
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>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0037C04
          Length = 137879

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    cggggacgaggagggaggcggcgg 154
              |||||| |||||||||||||||||
Sbjct: 118901 cggggaggaggagggaggcggcgg 118878
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>dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13, map 22, complete
             sequences
          Length = 172432

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   atccccagctgcttgagagg 391
             ||||||||||||||||||||
Sbjct: 55729 atccccagctgcttgagagg 55710
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>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1448_G06
          Length = 136823

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaccaacccaaacccaaaag 96
             ||||||||||||||||||||
Sbjct: 14941 aaccaacccaaacccaaaag 14922
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>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1611_C08
          Length = 135386

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     aaccaacccaaacccaaaag 96
              ||||||||||||||||||||
Sbjct: 114077 aaccaacccaaacccaaaag 114058
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>dbj|AK120021.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C03, full
           insert sequence
          Length = 1546

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggtcctcctccatcttcgcg 286
           ||||||||||||||||||||
Sbjct: 265 ggtcctcctccatcttcgcg 246
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>dbj|AK104741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E01, full
           insert sequence
          Length = 1014

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggtcctcctccatcttcgcg 286
           ||||||||||||||||||||
Sbjct: 268 ggtcctcctccatcttcgcg 249
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>dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full
           insert sequence
          Length = 3560

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 cggggacgaggagggaggcggcgg 154
           |||||| |||||||||||||||||
Sbjct: 159 cggggaggaggagggaggcggcgg 136
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>dbj|AK099507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029B17, full
           insert sequence
          Length = 1067

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggtcctcctccatcttcgcg 286
           ||||||||||||||||||||
Sbjct: 269 ggtcctcctccatcttcgcg 250
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>dbj|AK060110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D03, full
           insert sequence
          Length = 1014

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggtcctcctccatcttcgcg 286
           ||||||||||||||||||||
Sbjct: 268 ggtcctcctccatcttcgcg 249
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>tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for collagen, type VI, alpha 3
              and mlph gene for melanophilin
          Length = 212696

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    cggggacgaggagggaggcggcgg 154
              |||||||||||||||||| |||||
Sbjct: 176428 cggggacgaggagggagggggcgg 176405
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>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 187   cggcggcgagacgcggcgggaggagggc 214
             |||||||| |||||||||||||||||||
Sbjct: 92941 cggcggcg-gacgcggcgggaggagggc 92967



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 187   cggcggcgagacgcggcgggaggagggc 214
             |||||||| |||||||||||||||||||
Sbjct: 84023 cggcggcg-gacgcggcgggaggagggc 84049
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 187   cggcggcgagacgcggcgggaggagggc 214
             |||||||| |||||||||||||||||||
Sbjct: 12786 cggcggcg-gacgcggcgggaggagggc 12812



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 187  cggcggcgagacgcggcgggaggagggc 214
            |||||||| |||||||||||||||||||
Sbjct: 3868 cggcggcg-gacgcggcgggaggagggc 3894
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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ggtcctcctccatcttcgcg 286
             ||||||||||||||||||||
Sbjct: 37458 ggtcctcctccatcttcgcg 37477
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>emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed Doberman
          Length = 197532

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    cggggacgaggagggaggcggcgg 154
              |||||||||||||||||| |||||
Sbjct: 175169 cggggacgaggagggagggggcgg 175146
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     cgcaccaccaccaccgccgg 328
               ||||||||||||||||||||
Sbjct: 3916242 cgcaccaccaccaccgccgg 3916223
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>gb|AC139158.3| Mus musculus BAC clone RP24-77I7 from 8, complete sequence
          Length = 203921

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     aaccaacccaaacccaaaag 96
              ||||||||||||||||||||
Sbjct: 100470 aaccaacccaaacccaaaag 100489
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>gb|AC002064.1|HSAC002064 Human BAC clone RG016J04 from 7q21, complete sequence
          Length = 156214

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    cgccgggacgcgctcctcgg 342
              ||||||||||||||||||||
Sbjct: 113266 cgccgggacgcgctcctcgg 113247
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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   cggggacgaggagggaggcggcgg 154
             |||||| |||||||||||||||||
Sbjct: 70471 cggggaggaggagggaggcggcgg 70448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,431,399
Number of Sequences: 3902068
Number of extensions: 4431399
Number of successful extensions: 113856
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111532
Number of HSP's gapped (non-prelim): 2316
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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