ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart34g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472276.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 208 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 267 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 80 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 139 Query: 268 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 327 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 140 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 199 Query: 328 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 373 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 200 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 245 Score = 131 bits (66), Expect = 3e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 426 tcccaggagatcttccgcggaagcaagctgttccaggtgtatgtggtgatgggcaccacg 485 ||||| |||||||||||||| |||| | |||||||| ||| |||||| |||| || ||| Sbjct: 283 tcccaagagatcttccgcggcagcacgtggttccaggcgtacgtggtgctggggacgacg 342 Query: 486 gtggggctgttcctgccgctggcgcacgtcctgggcgggttcgcgcgcggcgacgacg 543 ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 343 gtggggctgttcctgccgctggcgcacgtgctgggcggattcgcgcgcggggacgacg 400
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 208 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 267 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 97464 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 97523 Query: 268 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 327 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 97524 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 97583 Query: 328 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 373 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 97584 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 97629 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 455 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 514 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 97782 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 97841 Query: 515 cctgggcgggttcgcgcgcggcgacgacg 543 |||||||| ||||||||||| ||||||| Sbjct: 97842 gctgggcggattcgcgcgcggggacgacg 97870 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 129 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 173 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 97373 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 97417
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 208 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 267 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 19005539 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 19005598 Query: 268 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 327 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 19005599 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 19005658 Query: 328 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 373 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 19005659 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 19005704 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 455 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 514 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 19005857 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 19005916 Query: 515 cctgggcgggttcgcgcgcggcgacgacg 543 |||||||| ||||||||||| ||||||| Sbjct: 19005917 gctgggcggattcgcgcgcggggacgacg 19005945 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcct 321 ||||||||||||||||||||| Sbjct: 29304945 tcccgctcatcgacctcgcct 29304965 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 129 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 173 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 19005448 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 19005492
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 491 gctgttcctgccgctggcgcacgtc 515 ||||||||||||||||||||||||| Sbjct: 2265654 gctgttcctgccgctggcgcacgtc 2265678 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 8396209 gtcgtcaccaccctctacctc 8396189
>gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence Length = 190228 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 tgccttcctctgctttcctctc 33 |||||||||||||||||||||| Sbjct: 165180 tgccttcctctgctttcctctc 165159
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 ggagcggcagccgtcgtcggcg 215 |||||||||||||||||||||| Sbjct: 4168143 ggagcggcagccgtcgtcggcg 4168122
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 245 cgtcatcgagctccagctcgtc 266 |||||||||||||||||||||| Sbjct: 5944913 cgtcatcgagctccagctcgtc 5944934
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 tgttcctgccgctggcgcacgt 514 |||||||||||||||||||||| Sbjct: 4913886 tgttcctgccgctggcgcacgt 4913907
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 ggagcggcagccgtcgtcggcg 215 |||||||||||||||||||||| Sbjct: 4168130 ggagcggcagccgtcgtcggcg 4168109
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 ggagcggcagccgtcgtcggcg 215 |||||||||||||||||||||| Sbjct: 110539 ggagcggcagccgtcgtcggcg 110518
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 gctgttcctgccgctggcgcac 512 |||||||||||||||||||||| Sbjct: 447252 gctgttcctgccgctggcgcac 447273
>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete sequences Length = 173185 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 451 agctgttccaggtgtatgtggt 472 |||||||||||||||||||||| Sbjct: 78658 agctgttccaggtgtatgtggt 78637
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcct 321 ||||||||||||||||||||| Sbjct: 116 tcccgctcatcgacctcgcct 136
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 cctcatcgtcctctcccgcctcgcc 368 ||||||| ||||||||||||||||| Sbjct: 3533142 cctcatcctcctctcccgcctcgcc 3533118
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 catcgacctcgccttcccggt 328 ||||||||||||||||||||| Sbjct: 67420 catcgacctcgccttcccggt 67440
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcct 321 ||||||||||||||||||||| Sbjct: 107991 tcccgctcatcgacctcgcct 108011
>emb|AL022071.1|SPBC354 S.pombe chromosome II cosmid c354 Length = 44124 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 gcctcgccttcccttcgctcc 381 ||||||||||||||||||||| Sbjct: 26893 gcctcgccttcccttcgctcc 26873
>ref|NM_001021140.1| Schizosaccharomyces pombe 972h- glucoamylase (SPBC354.10), partial mRNA Length = 2892 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 gcctcgccttcccttcgctcc 381 ||||||||||||||||||||| Sbjct: 150 gcctcgccttcccttcgctcc 130
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 26719880 gtcgtcaccaccctctacctc 26719860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 18562873 tcccgctcatcgacctcgcc 18562854 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 18502719 tcccgctcatcgacctcgcc 18502700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 cctcatcgtcctctcccgcctcgcc 368 ||||||| ||||||||||||||||| Sbjct: 3533253 cctcatcctcctctcccgcctcgcc 3533229
>dbj|AB210848.1| Lemna gibba LgGI H1 mRNA for GI homologue, complete cds Length = 3936 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 cgagctccagctcgtcgccttcatc 275 |||||||||||||||| |||||||| Sbjct: 2307 cgagctccagctcgtccccttcatc 2331
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 cctcatcgtcctctcccgcctcgcc 368 ||||||| ||||||||||||||||| Sbjct: 50795 cctcatcctcctctcccgcctcgcc 50771
>gb|AF230488.1|AF230488 Streptomyces coelicolor A3(2) F23a (f23a) gene, complete cds; and F23b (f23b) gene, partial cds Length = 1270 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 catcgacctcgccttcccggt 328 ||||||||||||||||||||| Sbjct: 847 catcgacctcgccttcccggt 827
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 131407 gtcgtcaccaccctctacctc 131387
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 gatgctggggggcgtcatgggctcg 239 ||||||||| ||||||||||||||| Sbjct: 6714248 gatgctgggcggcgtcatgggctcg 6714224
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 63222 gtcgtcaccaccctctacctc 63202
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcct 321 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gtcgtcaccaccctctacctc 347 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcct 321 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gctgttcctgccgctggcgc 510 |||||||||||||||||||| Sbjct: 320191 gctgttcctgccgctggcgc 320172
>gb|AC152106.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A4, complete sequence Length = 34754 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ccgccgcgcactccgccgcg 425 |||||||||||||||||||| Sbjct: 26131 ccgccgcgcactccgccgcg 26112
>ref|XM_529908.1| PREDICTED: Pan troglodytes LOC455113 (LOC455113), mRNA Length = 566 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 gtggtgatgggcaccacggtgggg 491 ||||||| |||||||||||||||| Sbjct: 152 gtggtgaggggcaccacggtgggg 129
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|XM_465737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 309 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aagccgccgccgcgcactcc 419 |||||||||||||||||||| Sbjct: 241 aagccgccgccgcgcactcc 222
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 496 tcctgccgctggcgcacgtcctgggcgg 523 ||||||||||||||||| || ||||||| Sbjct: 93120 tcctgccgctggcgcacctcgtgggcgg 93147
>ref|NM_197632.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0082M15.6), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 342 tacctcatcgtcctctcccgcctcgccttccc 373 |||||| ||||||||||| |||||||||||| Sbjct: 229 tacctcgtcgtcctctccgtcctcgccttccc 260
>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0010H19, complete sequence Length = 162902 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 gccgccgccgcgcactccgccgcgtccc 429 |||||||||||||| |||||||| |||| Sbjct: 152818 gccgccgccgcgcattccgccgcatccc 152791
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 gccgccgccgcgcactccgccgcg 425 ||||||||||||| |||||||||| Sbjct: 83572 gccgccgccgcgccctccgccgcg 83595
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence Length = 174844 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 gccgccgccgcgcactccgccgcgtccc 429 |||||||||||||| |||||||| |||| Sbjct: 86601 gccgccgccgcgcattccgccgcatccc 86574
>ref|NM_146153.3| Mus musculus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>ref|XR_002399.1| PREDICTED: Mus musculus similar to thyroid hormone receptor associated protein 3 (LOC669162), mRNA Length = 3407 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 1881 cctcgccttcccggtcgtca 1862
>gb|BC040346.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:3498255), with apparent retained intron Length = 4283 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2745 cctcgccttcccggtcgtca 2726
>gb|BC048391.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:6314114), complete cds Length = 1715 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 180 cctcgccttcccggtcgtca 161
>emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on chromosome 1 Contains the 3' end of the PBX1 gene for pre-B-cell leukemia transcription factor 1 and a ribosomal protein L35a (RPL35A) pseudogene, complete sequence Length = 197482 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 cctgccttcctctgctttcctctc 33 |||||||||| ||||||||||||| Sbjct: 84288 cctgccttccactgctttcctctc 84265
>emb|AL139289.6| Human DNA sequence from clone RP1-92O14 on chromosome 1p33-34.2 Contains the 3' end of the TIE gene for tyrosine kinase with immunoglobulin and epidermal growth factor homology domains, the MPL gene for myeloproliferative leukemia virus oncogene, two novel genes, the CDC20 gene for CDC20 cell division cycle 20 homolog (S. cerevisiae), the ELOVL1 gene for elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1, the MED8 gene for mediator of RNA polymerase II transcription subunit 8 homolog (yeast) and the 5' end of the gene for a novel protein (LOC149469), complete sequence Length = 90433 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ccctgccttcctctgctttcctct 32 |||||||||| ||||||||||||| Sbjct: 56593 ccctgccttcttctgctttcctct 56570
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 477 ggcaccacggtggggctgttcctgccgc 504 |||||| ||||| ||||||||||||||| Sbjct: 258600 ggcaccgcggtgcggctgttcctgccgc 258573
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gccgtcgtcggcgatgctgg 222 |||||||||||||||||||| Sbjct: 49183 gccgtcgtcggcgatgctgg 49202
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 477 ggcaccacggtggggctgttcctgccgc 504 |||||| ||||| ||||||||||||||| Sbjct: 330285 ggcaccgcggtgcggctgttcctgccgc 330258
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 477 ggcaccacggtggggctgttcctgccgc 504 |||||| ||||| ||||||||||||||| Sbjct: 2604 ggcaccgcggtgcggctgttcctgccgc 2631
>gb|BC092239.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:116673 IMAGE:30659321), complete cds Length = 4266 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2730 cctcgccttcccggtcgtca 2711
>gb|BC033472.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:4947317), with apparent retained intron Length = 1955 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 411 cctcgccttcccggtcgtca 392
>gb|AC093420.2| Homo sapiens chromosome 1 clone RP11-282K6, complete sequence Length = 193766 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ccctgccttcctctgctttcctct 32 |||||||||| ||||||||||||| Sbjct: 190572 ccctgccttcttctgctttcctct 190549
>ref|NM_001038053.1| Bos taurus eukaryotic translation initiation factor 2-alpha kinase 1 (EIF2AK1), mRNA Length = 2860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cggcgatgctggggggcgtc 230 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 342 tacctcatcgtcctctcccgcctcgccttccc 373 |||||| ||||||||||| |||||||||||| Sbjct: 138441 tacctcgtcgtcctctccgtcctcgccttccc 138472
>dbj|AK153954.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430012L16 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 2121 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 613 cctcgccttcccggtcgtca 594
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 491 gctgttcctgccgctggcgcacgt 514 ||||||||| |||||||||||||| Sbjct: 3668973 gctgttcctcccgctggcgcacgt 3668996
>dbj|AK169008.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920073L08 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 1764 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 253 cctcgccttcccggtcgtca 234
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 gccgccgccgcgcactccgccgcg 425 ||||||||||||| |||||||||| Sbjct: 62329 gccgccgccgcgccctccgccgcg 62306
>gb|DQ077734.1| Acipenser sturio arylalkylamine N-acetyltransferse 2 (AANAT2) mRNA, partial cds Length = 246 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cagctcgtcgccttcatcat 277 |||||||||||||||||||| Sbjct: 16 cagctcgtcgccttcatcat 35
>dbj|AK046010.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230333E16 product:THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN COMPLEX COMPONENT TRAP150 homolog [Homo sapiens], full insert sequence Length = 2659 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 1147 cctcgccttcccggtcgtca 1128
>gb|BC111252.1| Bos taurus cDNA clone MGC:134528 IMAGE:8066490, complete cds Length = 2860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cggcgatgctggggggcgtc 230 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>gb|AF327494.1|AF327494 Styrax benzoin internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 645 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccttcctctgctttcctctc 33 |||||||||||||||||||| Sbjct: 78 ccttcctctgctttcctctc 97
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 342 tacctcatcgtcctctcccgcctcgccttccc 373 |||||| ||||||||||| |||||||||||| Sbjct: 20925950 tacctcgtcgtcctctccgtcctcgccttccc 20925919
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aagccgccgccgcgcactcc 419 |||||||||||||||||||| Sbjct: 8666449 aagccgccgccgcgcactcc 8666430
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 gccgccgccgcgcactccgccgcgtccc 429 |||||||||||||| |||||||| |||| Sbjct: 10469785 gccgccgccgcgcattccgccgcatccc 10469758 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 gccgccgccgcgcactccgccgcg 425 ||||||||||||| |||||||||| Sbjct: 2805246 gccgccgccgcgccctccgccgcg 2805269
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 aagccgccgccgcgcactcc 419 |||||||||||||||||||| Sbjct: 17106005 aagccgccgccgcgcactcc 17106024
>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence Length = 154316 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 21164 cctcgccttcccggtcgtca 21183
>gb|AY189899.1| Pseudorabies virus strain Ea UL15 (UL15), UL17 (UL17), UL16 (UL16), and UL14 (UL14) genes, complete cds; and UL13 (UL13) gene, partial cds Length = 6671 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cctcgtcccgctcatcgacctcgc 319 ||||||||||||||||| |||||| Sbjct: 4579 cctcgtcccgctcatcgccctcgc 4556
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 cgaccaagccgccgccgcgc 414 |||||||||||||||||||| Sbjct: 843283 cgaccaagccgccgccgcgc 843302
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aagccgccgccgcgcactcc 419 |||||||||||||||||||| Sbjct: 96245 aagccgccgccgcgcactcc 96226
>emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chromosome 4, complete sequence Length = 78870 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 67422 cctcgccttcccggtcgtca 67441
>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0483C08 Length = 143855 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 aagccgccgccgcgcactcc 419 |||||||||||||||||||| Sbjct: 87378 aagccgccgccgcgcactcc 87397
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 144896 tcccgctcatcgacctcgcc 144877 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcccgctcatcgacctcgcc 320 |||||||||||||||||||| Sbjct: 84742 tcccgctcatcgacctcgcc 84723
>dbj|AK110059.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D08, full insert sequence Length = 3071 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggctcgctccgcgtcatcga 253 |||||||||||||||||||| Sbjct: 2696 ggctcgctccgcgtcatcga 2677
>dbj|AK107224.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D06, full insert sequence Length = 1141 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 342 tacctcatcgtcctctcccgcctcgccttccc 373 |||||| ||||||||||| |||||||||||| Sbjct: 362 tacctcgtcgtcctctccgtcctcgccttccc 393
>gb|BC091635.1| Xenopus laevis cDNA clone MGC:98683 IMAGE:7200779, complete cds Length = 4541 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2989 cctcgccttcccggtcgtca 2970
>tpe|BN000505.3| TPA: TPA_inf: Magnaporthe grisea 70-15 syn8 gene for putative polyketide synthase, exons 1-2 Length = 13004 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 ccctctacctcatcgtcctctccc 360 ||||||| |||||||||||||||| Sbjct: 8703 ccctctagctcatcgtcctctccc 8726
>gb|BC088415.1| Rattus norvegicus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:94882 IMAGE:7110766), complete cds Length = 3586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 342 tacctcatcgtcctctcccgcctcgccttccc 373 |||||| ||||||||||| |||||||||||| Sbjct: 20937214 tacctcgtcgtcctctccgtcctcgccttccc 20937183
>ref|NM_001009693.1| Rattus norvegicus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 3586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctcgccttcccggtcgtca 333 |||||||||||||||||||| Sbjct: 171918 cctcgccttcccggtcgtca 171899 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,830,080 Number of Sequences: 3902068 Number of extensions: 3830080 Number of successful extensions: 89507 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87132 Number of HSP's gapped (non-prelim): 2372 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
