Clone Name	bart34f05
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	57	5e-08
2	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	57	5e-08
3	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	56	9e-08
4	CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1	55	1e-07
5	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	54	3e-07
6	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	54	3e-07
7	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	53	7e-07
8	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	52	1e-06
9	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	52	1e-06
10	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	52	1e-06
11	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	51	2e-06
12	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	51	3e-06
13	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	51	3e-06
14	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	51	3e-06
15	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	51	3e-06
16	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	50	4e-06
17	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	50	4e-06
18	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	50	5e-06
19	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	50	5e-06
20	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	50	5e-06
21	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	50	6e-06
22	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
23	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
24	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
25	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	50	6e-06
26	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	50	6e-06
27	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	49	8e-06
28	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	49	8e-06
29	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	49	8e-06
30	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	49	8e-06
31	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	49	8e-06
32	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	49	1e-05
33	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	49	1e-05
34	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	49	1e-05
35	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	49	1e-05
36	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	48	2e-05
37	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	48	2e-05
38	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	48	2e-05
39	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	48	2e-05
40	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	48	2e-05
41	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	48	2e-05
42	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	48	2e-05
43	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	48	2e-05
44	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	48	2e-05
45	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	47	3e-05
46	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	47	3e-05
47	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	47	3e-05
48	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	47	3e-05
49	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	47	3e-05
50	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	47	3e-05
51	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	47	3e-05
52	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	47	4e-05
53	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	47	4e-05
54	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	47	4e-05
55	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	47	5e-05
56	SXL_MEGSC (O01671) Sex-lethal homolog	47	5e-05
57	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	46	9e-05
58	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	46	9e-05
59	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	46	9e-05
60	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	46	9e-05
61	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	45	1e-04
62	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	45	1e-04
63	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	45	2e-04
64	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	45	2e-04
65	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	45	2e-04
66	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	45	2e-04
67	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	45	2e-04
68	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	45	2e-04
69	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	45	2e-04
70	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	45	2e-04
71	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	45	2e-04
72	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	45	2e-04
73	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	45	2e-04
74	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	45	2e-04
75	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	44	3e-04
76	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	44	3e-04
77	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	44	3e-04
78	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	44	3e-04
79	GAR2_SCHPO (P41891) Protein gar2	44	3e-04
80	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	44	3e-04
81	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	44	3e-04
82	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	44	3e-04
83	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	44	3e-04
84	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	44	3e-04
85	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	44	3e-04
86	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	44	3e-04
87	SXL_CHRRU (O97018) Sex-lethal homolog	44	3e-04
88	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	44	4e-04
89	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	44	4e-04
90	SGN1_YEAST (P40561) RNA-binding protein SGN1	43	6e-04
91	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	43	6e-04
92	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	43	6e-04
93	RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho...	43	6e-04
94	BOLL_MOUSE (Q924M5) Protein boule-like	43	6e-04
95	NOP12_YEAST (Q08208) Nucleolar protein 12	43	8e-04
96	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	43	8e-04
97	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	43	8e-04
98	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	43	8e-04
99	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	43	8e-04
100	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	43	8e-04
101	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	43	8e-04
102	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	42	0.001
103	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	42	0.001
104	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	42	0.001
105	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	42	0.001
106	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	42	0.001
107	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	42	0.001
108	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	42	0.002
109	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	42	0.002
110	BOLL_MACFA (Q8WP23) Protein boule-like	42	0.002
111	BOLL_HUMAN (Q8N9W6) Protein boule-like	42	0.002
112	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
113	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	41	0.002
114	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	41	0.002
115	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	41	0.002
116	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	41	0.002
117	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	41	0.002
118	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	41	0.002
119	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	41	0.002
120	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	41	0.002
121	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	41	0.002
122	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	41	0.002
123	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	41	0.003
124	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	41	0.003
125	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	41	0.003
126	SXL_MUSDO (O17310) Sex-lethal homolog	40	0.004
127	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	40	0.004
128	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	40	0.004
129	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	40	0.004
130	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	40	0.004
131	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	40	0.004
132	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	40	0.004
133	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	40	0.004
134	MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos...	40	0.005
135	NUCL_XENLA (P20397) Nucleolin (Protein C23)	40	0.005
136	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	40	0.005
137	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	40	0.005
138	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	40	0.006
139	SXL_DROME (P19339) Protein sex-lethal	39	0.008
140	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	39	0.008
141	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	39	0.011
142	SXL_DROSU (Q24668) Protein sex-lethal	39	0.011
143	MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos...	39	0.011
144	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	39	0.011
145	NUCL_MACFA (Q4R4J7) Nucleolin	39	0.014
146	NUCL_MESAU (P08199) Nucleolin (Protein C23)	39	0.014
147	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	39	0.014
148	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	39	0.014
149	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	39	0.014
150	NUCL_PONPY (Q5RF26) Nucleolin	39	0.014
151	NUCL_CHICK (P15771) Nucleolin (Protein C23)	39	0.014
152	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	39	0.014
153	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	38	0.019
154	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	38	0.024
155	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	38	0.024
156	NOP12_ASHGO (Q75BJ7) Nucleolar protein 12	38	0.024
157	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	38	0.024
158	CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity fact...	38	0.024
159	CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity fa...	38	0.024
160	CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity fa...	38	0.024
161	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	38	0.024
162	NAM8_YEAST (Q00539) Protein NAM8	37	0.032
163	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	37	0.032
164	IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R...	37	0.032
165	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	37	0.032
166	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	37	0.032
167	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	37	0.041
168	NUCL_RAT (P13383) Nucleolin (Protein C23)	37	0.041
169	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	37	0.054
170	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	37	0.054
171	MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos...	37	0.054
172	PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E...	36	0.070
173	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
174	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
175	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
176	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
177	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
178	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	36	0.070
179	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	36	0.070
180	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	36	0.070
181	FCA_ARATH (O04425) Flowering time control protein FCA	36	0.070
182	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	36	0.092
183	YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 i...	36	0.092
184	PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 ...	35	0.12
185	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	35	0.12
186	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	35	0.12
187	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	35	0.12
188	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	35	0.12
189	RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p...	35	0.16
190	RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p...	35	0.16
191	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	35	0.16
192	NOP12_DEBHA (Q6BTS9) Nucleolar protein 12	35	0.16
193	NOP12_CANAL (Q5AHI7) Nucleolar protein 12	35	0.16
194	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	35	0.16
195	TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)	35	0.16
196	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	35	0.16
197	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	35	0.21
198	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	35	0.21
199	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	35	0.21
200	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	35	0.21
201	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	35	0.21
202	HSH49_YEAST (Q99181) Protein HSH49	34	0.27
203	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	34	0.35
204	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	34	0.35
205	RAVR1_HUMAN (Q8IY67) Protein raver-1	34	0.35
206	PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	34	0.35
207	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	34	0.35
208	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	33	0.46
209	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	33	0.46
210	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	33	0.46
211	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	33	0.46
212	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	33	0.46
213	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	33	0.60
214	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	33	0.60
215	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	33	0.60
216	RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)	33	0.78
217	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	33	0.78
218	RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin...	33	0.78
219	PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ...	33	0.78
220	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	33	0.78
221	PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres...	33	0.78
222	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	33	0.78
223	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	32	1.0
224	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	32	1.3
225	RAVR1_RAT (Q5XI28) Protein raver-1	32	1.3
226	RAVR1_MOUSE (Q9CW46) Protein raver-1	32	1.3
227	PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	32	1.3
228	RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U...	32	1.3
229	PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 ...	32	1.3
230	SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein...	32	1.3
231	G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei...	32	1.7
232	G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei...	32	1.7
233	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	32	1.7
234	NOP12_ASPFU (Q4WCH5) Nucleolar protein 12	32	1.7
235	NOP12_EMENI (Q5BDC8) Nucleolar protein 12	32	1.7
236	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	31	2.3
237	MYO1_YEAST (P08964) Myosin-1 (Type II myosin)	31	2.3
238	NOP12_GIBZE (Q4IQW0) Nucleolar protein 12	31	2.3
239	WUS_ARATH (Q9SB92) Protein WUSCHEL (AtWUS) (Plant growth activat...	31	2.3
240	IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 9...	31	3.0
241	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	31	3.0
242	BOULE_DROME (Q24207) Protein boule	30	3.9
243	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	30	3.9
244	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	30	3.9
245	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	30	3.9
246	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	30	3.9
247	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	30	3.9
248	RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif pro...	30	5.0
249	RAVR2_MOUSE (Q7TPD6) Protein raver-2	30	5.0
250	RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p...	30	5.0
251	PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin...	30	6.6
252	PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	6.6
253	PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	6.6
254	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	30	6.6
255	IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 sub...	30	6.6
256	IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 s...	30	6.6
257	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	30	6.6
258	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	29	8.6
259	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	29	8.6
260	RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif pro...	29	8.6

---

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 24/61 (39%), Positives = 38/61 (62%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           +  T+W+G+L+ W+ E ++   +   G+ V +K+IRNR TG + GY FVEF S   A  A
Sbjct: 91  QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150

Query: 548 L 550
           +
Sbjct: 151 M 151



 Score = 33.5 bits (75), Expect = 0.46
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPS-GEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           +I+VGDL   ++E  +++ F        + K++ + QT  S GYGFV F        AL 
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246

Query: 554 NFTGHV 571
              G +
Sbjct: 247 EMQGQI 252

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G GG+G      ++VG+L + +D+  L + F   G+VV  +VI +R +G+S+G+GFV + 
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253

Query: 524 SHASADKALQNFTG 565
           S      A+++  G
Sbjct: 254 SSQEVQNAIKSLDG 267



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG+L + +D   L   F  +G V  ++VI ++ TG+S G+GFV   S +  + A Q F
Sbjct: 93  LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query: 560 TGH 568
            G+
Sbjct: 153 NGY 155

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 344 GSG-GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           GSG G+G      ++VG+L + +D+  L N F   G+VV  +VI +R +G+S+G+GFV  
Sbjct: 246 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305

Query: 521 FSHASADKALQNFTG 565
            S     KA+ +  G
Sbjct: 306 SSSQEVQKAINSLNG 320



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +2

Query: 356 NGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHAS 535
           N    +  ++VG+L + +D   L   F  +G V  ++VI ++ TG+S G+GFV   + A 
Sbjct: 93  NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152

Query: 536 ADKALQNFTGH 568
            + A Q F G+
Sbjct: 153 VEAAAQQFNGY 163

---

>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSE--GYGFVEFFS 526
           G G + + T+W+GDL+ WMD  ++   +    E V +KV+R++ +       Y FV+F S
Sbjct: 78  GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSS 137

Query: 527 HASADKALQNFTGHVMP 577
            A+A++AL  +   ++P
Sbjct: 138 SAAAERALMKYNNTMIP 154



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           N T++VG L   + E  L  CF P G ++ IK+         +G GFV++   ++A+KA+
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKI------PFGKGCGFVQYSEKSAAEKAI 349

Query: 551 QNFTG 565
               G
Sbjct: 350 NTMQG 354



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFG---PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           +I+VGDL    +++ L   F    PS    + K+I +  TG S  YGFV F S      A
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPS--CTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240

Query: 548 LQNFTGHV 571
           L +  G++
Sbjct: 241 LMHMQGYL 248

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 43/72 (59%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           GG   + +  ++VG+L + +D++ L   F   G+VV  KV+ +R +G+S G+GFV + S 
Sbjct: 180 GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSA 239

Query: 530 ASADKALQNFTG 565
              + A+++  G
Sbjct: 240 EEVNNAIESLDG 251



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
 Frame = +2

Query: 350 GGNGCEENKT------IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGF 511
           G +G EE +       I+VG+L +  D   L   F  +G V  ++VI ++ TG+S G+GF
Sbjct: 73  GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132

Query: 512 VEFFSHASADKALQNFTGH 568
           V   S    + A Q F G+
Sbjct: 133 VTMSSKEEVEAACQQFNGY 151

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 43/72 (59%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           GG   + +  ++VG+L + +D++ L   F   G+VV  KV+ +R +G+S G+GFV + S 
Sbjct: 186 GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSA 245

Query: 530 ASADKALQNFTG 565
              + A+++  G
Sbjct: 246 EEVNNAIESLDG 257



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +2

Query: 350 GGNGCEENKT------IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGF 511
           G  G EE +       I+VG+L +  D   L   F  +G V  ++VI ++ TG+S G+GF
Sbjct: 73  GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132

Query: 512 VEFFSHASADKALQNFTGH 568
           V   S    + A Q F G+
Sbjct: 133 VTMSSKEEVEAACQQFNGY 151

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 24/67 (35%), Positives = 41/67 (61%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E++  I+VG++ + +D+  L   F   G+VV+ +V+ +R+TG+S G+GFV   S A    
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286

Query: 545 ALQNFTG 565
           A+ N  G
Sbjct: 287 AIANLDG 293

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 40/72 (55%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           GG   + +  ++VG+L + +D+  L   F   G VV  KV+ +R +G+S G+GFV + S 
Sbjct: 199 GGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSS 258

Query: 530 ASADKALQNFTG 565
              + A+ +  G
Sbjct: 259 KEVNDAIDSLNG 270



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E+  ++VG+L + +D   L   F  +G V  ++VI ++ TG+S G+GFV   +    + A
Sbjct: 85  EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144

Query: 548 LQNFTGH 568
            Q F G+
Sbjct: 145 EQQFNGY 151

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 40/72 (55%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           GG   + +  ++VG+L + +D+  L   F   G VV  KV+ +R +G+S G+GFV + S 
Sbjct: 200 GGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSA 259

Query: 530 ASADKALQNFTG 565
              + A+ +  G
Sbjct: 260 KEVNDAIDSLNG 271



 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 21/67 (31%), Positives = 38/67 (56%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E+  ++VG+L + +D   L   F  +G V  ++VI ++ +G+S G+GFV   +    + A
Sbjct: 86  EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145

Query: 548 LQNFTGH 568
            Q F G+
Sbjct: 146 EQQFNGY 152

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           EE  TI+VG L + +D+ +L   F   G V+  +VI  R T +S GYG+V+F + + A+K
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224

Query: 545 ALQNFTG 565
           A+Q   G
Sbjct: 225 AIQEMQG 231



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 23/77 (29%), Positives = 43/77 (55%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G    E + T+++G+L +  D + +   F   GEVV++++  + +T Q +G+G+V+F + 
Sbjct: 259 GDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM 318

Query: 530 ASADKALQNFTGHVMPN 580
             A KAL    G  + N
Sbjct: 319 EDAKKALDALQGEYIDN 335

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/61 (39%), Positives = 40/61 (65%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           N +++VGDL + + ++ L + FG  G VVT++V R+  T +S GYG+V F +   A +A+
Sbjct: 35  NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94

Query: 551 Q 553
           Q
Sbjct: 95  Q 95



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 40/65 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   LH+ F   G +V+ KV  +  +GQS+GYGFV++ +  SA KA++  
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184

Query: 560 TGHVM 574
            G ++
Sbjct: 185 NGMLL 189



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
 Frame = +2

Query: 371 NKT----IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           NKT    ++V +L     ++ L N FG  G++ +  V+++ + G+S+G+GFV F +   A
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDA 268

Query: 539 DKALQNFTGH 568
            +A+++  GH
Sbjct: 269 ARAVESLNGH 278

---

>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 425



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 260



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 95

---

>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 95

---

>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 260



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 95

---

>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           T++VG +   MDE  + +CFG  G V  +K+I NR TG S+GYGFV F +     K
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQK 95

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 22/62 (35%), Positives = 38/62 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L + + E+ L   F P G + +I+++ + +TG+S+GYGF+ F     A KAL+  
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 560 TG 565
            G
Sbjct: 312 NG 313

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 22/62 (35%), Positives = 38/62 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L + + E+ L   F P G + +I+++ + +TG+S+GYGF+ F     A KAL+  
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 560 TG 565
            G
Sbjct: 312 NG 313

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 25/61 (40%), Positives = 35/61 (57%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +      L N F   GE++  KVI +R+TG+S G+GFV F S  S   A++N  
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 563 G 565
           G
Sbjct: 71  G 71

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+VG++ + +D+  L   F   G+VV+ +V+ +R++G+S G+GFV   S A   +A+ N 
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252

Query: 560 TGHVM 574
            G  +
Sbjct: 253 DGQTL 257



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E+  ++VG+L Y +D   L   F  +G V   +VI NR+T +S G+GFV   +   ADKA
Sbjct: 95  EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKA 154

Query: 548 LQNFT 562
           ++ ++
Sbjct: 155 VELYS 159

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++++VG++ Y   E  L + F   G VV+ +++ +R+TG+ +GYGF E+    +A  A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 554 NFTG 565
           N  G
Sbjct: 76  NLNG 79

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  DE  L   F   GE+V  K+I +R+TG+S G+GFV F    S   A++   
Sbjct: 11  FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 563 G 565
           G
Sbjct: 71  G 71

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VGDL   +    +   F P G +   +V+++  TG+S+GYGFV FF+   A+ A+Q  
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 560 TG 565
            G
Sbjct: 168 GG 169

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           ++ T++VG L   + E  L   F  +G VV   + ++R TGQ +GYGFVEF S   AD A
Sbjct: 11  QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70

Query: 548 LQ 553
           ++
Sbjct: 71  IK 72

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           GN  +    + V  L   M +  L + FG  GE+ + K++R++ TGQS GYGFV +    
Sbjct: 32  GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91

Query: 533 SADKALQNFTG 565
            A+KA+    G
Sbjct: 92  DAEKAINTLNG 102



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 560 TGH 568
            G+
Sbjct: 338 NGY 340

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           GN  +    + V  L   M +  L + FG  GE+ + K++R++ TGQS GYGFV +    
Sbjct: 32  GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91

Query: 533 SADKALQNFTG 565
            A+KA+    G
Sbjct: 92  DAEKAINTLNG 102



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 560 TGH 568
            G+
Sbjct: 338 NGY 340

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           GN  +    + V  L   M +  L + FG  GE+ + K++R++ TGQS GYGFV +    
Sbjct: 32  GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91

Query: 533 SADKALQNFTG 565
            A+KA+    G
Sbjct: 92  DAEKAINTLNG 102



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 560 TGH 568
            G+
Sbjct: 339 NGY 341

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G G +   E   ++VG+L Y +D   L   F  +G V   +VI NR+T +S G+GFV   
Sbjct: 45  GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMS 104

Query: 524 SHASADKALQNFTGHVM 574
           +   A+KA++   G+ M
Sbjct: 105 TVEEAEKAVELLNGYDM 121



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E +  ++VG+L + +D + L   F   G+VV+ +V+ +R+TG+S G+GFV   S +  + 
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205

Query: 545 ALQNFTGHVM 574
           A+    G  +
Sbjct: 206 AIAALDGQTL 215

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VGDL   +    +   F P G +   +V+++  TG+S+GYGFV FF+   A+ A+Q  
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 560 TG 565
            G
Sbjct: 168 GG 169

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++G L +  D+  L + F   G+VV  KVI +R+TG+S G+GFV F    +A  A+   
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 560 TG 565
            G
Sbjct: 97  DG 98

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  D+  L   F   GEV+  K+I +R+TG+S G+GFV F    S   A++   
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 563 G 565
           G
Sbjct: 71  G 71

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  +   L   F   G+V+  KVI +R+TG+S G+GFV F S  S   A++N  
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 563 G 565
           G
Sbjct: 71  G 71

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +2

Query: 365 EENKTIWVGD-LQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAD 541
           E++KT  + + L   M +  L + FG  GE+ + K++R++ TGQS GYGFV +     A+
Sbjct: 35  EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 542 KALQNFTG 565
           KA+    G
Sbjct: 95  KAINTLNG 102



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 560 TGH 568
            G+
Sbjct: 338 NGY 340

---

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 38/62 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VGDL   +    + + F P G++   +V+++  TG+S+GYGFV F++   A+ A+ + 
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 560 TG 565
            G
Sbjct: 176 GG 177

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 37/62 (59%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L + + E+ L   F P G++  I ++++  TG+S+GYGF+ F     A +AL+  
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 560 TG 565
            G
Sbjct: 325 NG 326

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 353 GNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G   +++KT + V  L   M +    + FG  GE+ + K++R++ TGQS GYGFV +   
Sbjct: 43  GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102

Query: 530 ASADKALQNFTG 565
             A+KA+    G
Sbjct: 103 KDAEKAINTLNG 114



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query: 560 TGH 568
            G+
Sbjct: 364 NGY 366

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ- 553
           T++VG +   MDE  + + F   G V  +K+I +R TG S+GYGFV FF+     K ++ 
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99

Query: 554 --NFTG 565
             NF G
Sbjct: 100 QINFHG 105

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ- 553
           T++VG +   MDE  + + F   G V  +K+I +R TG S+GYGFV FF+     K ++ 
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99

Query: 554 --NFTG 565
             NF G
Sbjct: 100 QINFHG 105

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 353 GNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G   +++KT + V  L   M +    + FG  GE+ + K++R++ TGQS GYGFV +   
Sbjct: 31  GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90

Query: 530 ASADKALQNFTG 565
             A+KA+    G
Sbjct: 91  KDAEKAINTLNG 102



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query: 560 TGH 568
            G+
Sbjct: 352 NGY 354

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 38/62 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VGDL   +    + + F P G++   +V+++  TG+S+GYGFV F++   A+ A+ + 
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 560 TG 565
            G
Sbjct: 159 GG 160

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 350 GGNGC-EENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G NG  +++KT + V  L   M ++   + FG  G++ + K++R++ TGQS GYGFV + 
Sbjct: 29  GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

Query: 524 SHASADKALQNFTG 565
               ADKA+    G
Sbjct: 89  DPNDADKAINTLNG 102



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G  G        I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   
Sbjct: 274 GLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 333

Query: 524 SHASADKALQNFTGH 568
           ++  A  A+ +  G+
Sbjct: 334 NYDEAAMAIASLNGY 348

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 350 GGNGC-EENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G NG  +++KT + V  L   M ++   + FG  G++ + K++R++ TGQS GYGFV + 
Sbjct: 29  GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

Query: 524 SHASADKALQNFTG 565
               ADKA+    G
Sbjct: 89  DPNDADKAINTLNG 102



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G  G        I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   
Sbjct: 274 GLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 333

Query: 524 SHASADKALQNFTGH 568
           ++  A  A+ +  G+
Sbjct: 334 NYDEAAMAIASLNGY 348

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++G L    DE+ L + F     V   +V+ N+ TG+S GYGFV F S  SA+ A+   
Sbjct: 33  LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92

Query: 560 TG 565
            G
Sbjct: 93  NG 94

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 37/57 (64%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           K ++VG ++   +E++L + F   G++ TI++I +RQ+G+  G+GFV F  H   DK
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 344 GSGGNGCEENK-TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           GS     E +  +++VGDL+  + E +L++ F P G V +I+V R+  T  S GY +V F
Sbjct: 26  GSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 85

Query: 521 FSHASADKALQ--NFT 562
             H +  KA++  N+T
Sbjct: 86  NDHEAGRKAIEQLNYT 101

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ- 553
           T++VG +   MDE  +   F   G V  +K+I +R TG S+GYGFV FF+     K ++ 
Sbjct: 41  TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES 99

Query: 554 --NFTG 565
             NF G
Sbjct: 100 QINFHG 105

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 37/57 (64%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           K ++VG ++   +E++L + F   G++ TI++I +RQ+G+  G+GFV F  H   DK
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  D+  L   F   G+V+  K+I +R+TG+S G+GFV F    +   A++   
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 563 G 565
           G
Sbjct: 71  G 71

---

>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 25/69 (36%), Positives = 39/69 (56%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GSGGN       +++  LQ    +  L     P G++V+ K I ++ T + +GYGFV+F 
Sbjct: 48  GSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 107

Query: 524 SHASADKAL 550
           S +SA KA+
Sbjct: 108 SPSSAQKAV 116



 Score = 36.2 bits (82), Expect = 0.070
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++   +++ +L   MDE  L     P G+V++ +++R+  +G S G GF    S    + 
Sbjct: 134 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEA 192

Query: 545 ALQNFTG 565
            + +F G
Sbjct: 193 IITHFNG 199

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 353 GNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G   +++KT + V  L   M +    + FG  GE+ + K++R++ TGQS GYGFV +   
Sbjct: 38  GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97

Query: 530 ASADKALQNFTG 565
             A+KA+    G
Sbjct: 98  KDAEKAINTLNG 109



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L    DE+ L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 560 TGH 568
            G+
Sbjct: 359 NGY 361

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ- 553
           T++VG +   MDE  + + F   G V  +K+I +R TG S+GYGFV F++     K ++ 
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES 99

Query: 554 --NFTG 565
             NF G
Sbjct: 100 QINFHG 105

---

>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 28/78 (35%), Positives = 42/78 (53%)
 Frame = +2

Query: 347 SGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 526
           SG N    N  + V  L   M +  L++ F   G + T +++R+ +TG S GYGFV+F S
Sbjct: 71  SGTNNSGTN--LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGS 128

Query: 527 HASADKALQNFTGHVMPN 580
            A A +A+ N  G  + N
Sbjct: 129 EADALRAINNLNGITVRN 146

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G V++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   L++ F   G +++ KV+ +     S+GY FV F +  +ADKA++  
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 21/67 (31%), Positives = 38/67 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG+L   +DE  L++ F   G++V    +   + G+S+GYGFV + S  +AD A++  
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160

Query: 560 TGHVMPN 580
               + N
Sbjct: 161 NNQFLMN 167

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           I+VG L Y   +  L   F   G++    VI +RQTG+S GYGFV     A+AD+A ++
Sbjct: 34  IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 37.0 bits (84), Expect = 0.041
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A+   
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L    +E  L   FGP G V ++K++++  T Q +GYGFV   ++  A  A++  
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query: 560 TGHVMPN 580
            G+ M N
Sbjct: 464 NGYTMGN 470



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
 Frame = +2

Query: 347 SGGNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQT------------ 487
           +G NG  E +T + V  L   M E+ + + F   GE+ ++K+IR++              
Sbjct: 139 NGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPS 198

Query: 488 -GQSEGYGFVEFFSHASADKALQNFTGHVMPN 580
            GQS GYGFV +     A++A+    G  + N
Sbjct: 199 KGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQN 230

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L    +E  L   FGP G V ++K++++  T Q +GYGFV   ++  A  A++  
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499

Query: 560 TGHVMPN 580
            G+ M N
Sbjct: 500 NGYTMGN 506



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
 Frame = +2

Query: 347 SGGNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQT------------ 487
           +G NG  E +T + V  L   M E+ + + F   GE+ ++K+IR++              
Sbjct: 175 NGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPS 234

Query: 488 -GQSEGYGFVEFFSHASADKALQNFTGHVMPN 580
            GQS GYGFV +     A++A+    G  + N
Sbjct: 235 KGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQN 266

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/66 (33%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY ++ F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFEVI 77



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 407 MDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           MD+  L   F   G  +++KV+ +  TG+S G+GFV + +H  A KA+    G
Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNG 253



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   L++ F   G +++ KV+ +     S GYGFV F +  +A++A+Q  
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L   FG  G  +++KV+ + ++G+S+G+GFV F  H 
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+    G
Sbjct: 243 DAQKAVDEMNG 253



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A++  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L   FG  G  +++KV+ + ++G+S+G+GFV F  H 
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+    G
Sbjct: 243 DAQKAVDEMNG 253



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A++  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 40/71 (56%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L + FG  G  +++KV+ + ++G+S+G+GFV F  H 
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+    G
Sbjct: 243 DAQKAVDEMNG 253



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A++  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 40/71 (56%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L + FG  G  +++KV+ + ++G+S+G+GFV F  H 
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+    G
Sbjct: 243 DAQKAVDEMNG 253



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A++  
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L   FG  G  +++KV+ +   G+S G+GFV F  H 
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+ +  G
Sbjct: 243 DAQKAVDDMNG 253



 Score = 37.0 bits (84), Expect = 0.041
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L++ F   G +++ KV+ +     S+GYGFV F +  +A++A+   
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 38/62 (61%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           + ++++VG+L Y +DE+ L   F   G +V ++++RN  TG   G+G+V F +  +   A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342

Query: 548 LQ 553
           L+
Sbjct: 343 LK 344

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           K ++VG L+   DE  L   F   G VV++K++ ++ TG+  G+ FVEF  + + DKA+
Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E  + +++G L  +  E  L   +G  G+VV + V+R+  T +S G+GF+ +      D+
Sbjct: 29  EHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR 88

Query: 545 ALQN 556
           A +N
Sbjct: 89  AQEN 92

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++   ++VGDL   +D+  L N F      ++  V+ + QTG S GYGFV F S   A  
Sbjct: 158 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 217

Query: 545 ALQNFTG 565
           A+ +  G
Sbjct: 218 AMDSMQG 224



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++ ++VG+L   + E+ L   F   G +  IK++ ++   ++  Y FVE+     A+ AL
Sbjct: 73  DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIAL 131

Query: 551 QNFTGHVMPN 580
           Q   G  + N
Sbjct: 132 QTLNGKQIEN 141

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +   +  L   F   GEV+  K+I +R+TG+S G+GFV F    S   A+    
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 563 G 565
           G
Sbjct: 69  G 69

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+VG L Y + E  +   F   GE+V I ++R+++TG+S+G+ F+ +    S   A+ NF
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query: 560 TG 565
            G
Sbjct: 98  NG 99

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 39/66 (59%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           ++++GDL   + E  L+  F P+G +++I+V R+  T +S GY ++ F   A A++AL  
Sbjct: 12  SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFEVI 77



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/65 (27%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   L++ F   G++++ KV+ +     S GYGFV F +  +A++A+Q  
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 39/66 (59%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++ +++G + Y   E  + +     G V+ +K++ + QTG+S+GY F+EF    S+  A+
Sbjct: 17  SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76

Query: 551 QNFTGH 568
           +N  G+
Sbjct: 77  RNLNGY 82

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           I+VG L Y   +  L   F   G++    VI +RQTG+S GYGFV     A+A++A ++
Sbjct: 13  IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  ++  L   F   G++   K+I +R+TG+S G+GFV F    S   A++   
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 563 G 565
           G
Sbjct: 69  G 69

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 21/70 (30%), Positives = 42/70 (60%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +E+  +++G L +   E+ L   FG  G V  +K++++  TG+S G+GF+ F   +S D+
Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 215

Query: 545 ALQNFTGHVM 574
            ++  T H++
Sbjct: 216 VVK--TQHIL 223



 Score = 37.0 bits (84), Expect = 0.041
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 365 EENKT--IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           E++KT  I+VG +   +        F   G ++  +++ ++ TGQS G+GFV + S  + 
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297

Query: 539 DKALQN 556
           D+  QN
Sbjct: 298 DRVCQN 303

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 39/61 (63%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E  T++VG L + +D+ +L   F   G +V  +VI + Q+G+S+GYG+V+F +  +A  A
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320

Query: 548 L 550
           +
Sbjct: 321 V 321



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/68 (32%), Positives = 41/68 (60%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E + T++VG+L +   E+ L   FG  G++ +I++  + Q+G+ +G+G+V F    SA K
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422

Query: 545 ALQNFTGH 568
            ++   GH
Sbjct: 423 CVE-MNGH 429

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 40/71 (56%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G   +E   +++ +    MD+  L + FG  G  +++KV+ + ++G+S+G+GFV F  H 
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242

Query: 533 SADKALQNFTG 565
            A KA+    G
Sbjct: 243 DAQKAVDEMNG 253



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   + E  L+  F P+G +++I++ R+  T  S  Y +V F     A+ AL  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFDVI 77



 Score = 34.3 bits (77), Expect = 0.27
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+V +L   ++   L++     G +++  V+ +     S+GYGFV F +H +A++A++  
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L    DE  L   FGP G V  +KVIR+  T + +G+GFV   ++  A  A+ + 
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 560 TGH 568
            G+
Sbjct: 306 NGY 308



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +2

Query: 407 MDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           M ++ L + F   GEV + K+IR++  G S GYGFV + +   A++A+    G
Sbjct: 31  MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   ++VG+L Y ++   L   F  +G V   +VI NR+T QS G+GFV   S   A+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207

Query: 548 LQNF 559
           ++ F
Sbjct: 208 VEKF 211



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG+L + +D   L   F   G+VV  +V+ +R+TG+S G+GFV        ++A+   
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305

Query: 560 TG 565
            G
Sbjct: 306 DG 307

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           ++ TI+VG L   + E+ L      +G VV++ + ++R T   +G+GFVEF     AD A
Sbjct: 11  QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70

Query: 548 LQ 553
           ++
Sbjct: 71  IK 72

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           K ++VG L+   DE  L   F   G++V++ ++ ++ TG+  G+ F+EF  +   DK + 
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIIL 174

Query: 554 NFTGHVMPNT 583
             T  +   T
Sbjct: 175 QKTHSIKNKT 184

---

>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 37/62 (59%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++ ++++VG+L +  DE  L   FG  G +  ++++R+ +T   +G+ +V+F    S  K
Sbjct: 225 DKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSK 284

Query: 545 AL 550
           AL
Sbjct: 285 AL 286

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +++  I++G L Y + E  +   F   GE+V I ++R+++TG+S+G+ F+ +    S   
Sbjct: 33  KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92

Query: 545 ALQNFTG 565
           A+ NF G
Sbjct: 93  AVDNFNG 99

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +2

Query: 347 SGGNGCEENK-----TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGF 511
           SGG  C +N+      + V  L   M +  L+  F   G + T +++++ +TG S GY F
Sbjct: 71  SGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAF 130

Query: 512 VEFFSHASADKALQNFTGHVMPN 580
           V+F S   A  A+++  G  + N
Sbjct: 131 VDFASEIDAQNAIKSLNGVTVRN 153

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG++ Y + E  +   F   G V T K++ + +TG  +GYGF EFF   +   A++
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66

---

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS GN       +++  LQ    +  L     P G++V+ K I ++ T + +GYGFV+F 
Sbjct: 46  GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 105

Query: 524 SHASADKAL 550
           S ++A KA+
Sbjct: 106 SPSAAQKAV 114



 Score = 36.2 bits (82), Expect = 0.070
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++   +++ +L   MDE  L     P G+V++ +++R+  +G S G GF    S    + 
Sbjct: 132 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEA 190

Query: 545 ALQNFTG 565
            + +F G
Sbjct: 191 IITHFNG 197

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 39/62 (62%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           ++++I+VG++   +    + + F   G++  I ++ +R TG  +GYG++EF S A  +KA
Sbjct: 62  DSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKA 121

Query: 548 LQ 553
           LQ
Sbjct: 122 LQ 123

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           EE K ++VG L +  DE  L + F   G +  + V+++R+T +S G+GF+ F +   A  
Sbjct: 4   EEGK-LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62

Query: 545 ALQNFTG 565
           A++   G
Sbjct: 63  AMRAMNG 69

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L    DE  L   FGP G V  +KVIR+  T + +G+GFV   ++  +  A+ + 
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305

Query: 560 TGH 568
            G+
Sbjct: 306 NGY 308



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 407 MDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           M +  L + F   GEV + K+IR++  G S GYGFV + +   A++A+    G
Sbjct: 31  MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83

---

>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           +TI++G L Y +DE  L   F   GE+  I++++++ T +S+GY F+ F    S+  A +
Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFK 166

Query: 554 NFTGH 568
               H
Sbjct: 167 EIGVH 171

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           I+VG + +  +EN L   F   G V  +K++ +R  G S+GYGF+ F +   A K LQ
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91

---

>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 38/62 (61%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++ ++I+VG+L +   E  L   F P G++  +++IR+ +T   +G+ +V+F    S +K
Sbjct: 276 DKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNK 335

Query: 545 AL 550
           AL
Sbjct: 336 AL 337

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           K ++VG ++   +E++L   F   G++ + ++I ++Q+G+  G+GFV F  H   DK
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDK 156

---

>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 18/62 (29%), Positives = 37/62 (59%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++ ++++VG+L +   E  L   F P G++  +++IR+ +T   +G+ +V+F    S  K
Sbjct: 356 DKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSK 415

Query: 545 AL 550
           AL
Sbjct: 416 AL 417

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 416 NYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           N LH+ F   GEV+  K+I +R+T +S G+GFV F +  +   A++   G
Sbjct: 1   NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNG 50

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++++ ++VG L +   E  L + FG  GE+ +I V  + QTG+S G+ F+ F +  + DK
Sbjct: 53  DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 23/68 (33%), Positives = 41/68 (60%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +++VGDL   ++E+ L + F  +G V++I+V R+  T +S GY +V F   A A++AL  
Sbjct: 3   SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62

Query: 557 FTGHVMPN 580
               ++ N
Sbjct: 63  MNFDLVRN 70



 Score = 35.8 bits (81), Expect = 0.092
 Identities = 16/65 (24%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   +++ F   G +++ KV  + + G S+GYGFV F +  +A+ ++   
Sbjct: 92  VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKV 150

Query: 560 TGHVM 574
            G ++
Sbjct: 151 NGMLL 155

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           EE K ++VG L +  DE  L + F   G +  + V+++R+T +S G+GF+ F +   A  
Sbjct: 4   EEGK-LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62

Query: 545 ALQNFTG 565
           A++   G
Sbjct: 63  AMRAMNG 69

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/66 (30%), Positives = 38/66 (57%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           ++++GDL   + E  L+  F P+G +++I+V R+  T +S  Y ++ F   A A++AL  
Sbjct: 12  SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71

Query: 557 FTGHVM 574
               V+
Sbjct: 72  MNFEVI 77



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/65 (29%), Positives = 38/65 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   L++ F   G +++ KV+ +     S GYGFV F +H +A++A+Q  
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158

Query: 560 TGHVM 574
            G ++
Sbjct: 159 NGMLL 163

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 18/62 (29%), Positives = 38/62 (61%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           + ++++VG+L Y ++++ L   F   G +V ++++RN  TG   G+G+V F +  +   A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348

Query: 548 LQ 553
           L+
Sbjct: 349 LK 350

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 383 WVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFT 562
           +VG L +  ++  L   F   G+V+  K+I +R++G+S G+GFV F    +   A++   
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 563 G 565
           G
Sbjct: 69  G 69

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/65 (33%), Positives = 37/65 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L   + E  L + F   G+V+ ++V R+++TG S+GYGFVEF     A    +  
Sbjct: 47  LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106

Query: 560 TGHVM 574
             ++M
Sbjct: 107 NNYLM 111

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           K ++VG L+  + E  L   F   G V   ++I ++Q+G+  G+GFV F +H +ADKA
Sbjct: 98  KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155

---

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           T++VG +   M+E  + + F   G V  +K+I +R TG S+GYGFV F  +    K +++
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVES 95

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +E   ++VG L +   +  L   F   G+++   V++N ++G+S G+GFV F    + + 
Sbjct: 4   DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63

Query: 545 ALQN 556
            LQN
Sbjct: 64  VLQN 67

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +2

Query: 356 NGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           +G +E   ++VG L +   +  L + F   GEVV   +++++ T QS G+GFV+F
Sbjct: 4   SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           I+VG + +  +E+ L   F   G V  +K++ +R  G S+GYGFV F +   A K LQ
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           I+VG + +  +E+ L   F   G V  +K++ +R  G S+GYGFV F +   A K LQ
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91

---

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           K ++VG L+   DE  + + F   G +V I ++ +++TG+  G+ FVEF  +   DK +
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 344 GSGGNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           G  G+G   N T + V  L   M +  L+  F   G + T +++R+ +TG S GY FV+F
Sbjct: 99  GRDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDF 158

Query: 521 FSHASADKALQNFTGHVMPN 580
            +   + +A+++  G  + N
Sbjct: 159 AAETDSQRAIKSLNGITVRN 178

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 359 GCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           G +E   ++VG L +   +  L + F   GEVV   +++++ T QS G+GFV+F
Sbjct: 5   GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           T++VG+L ++  E  ++  F  SG++  I +  ++    + G+ FVE++S A A+ A++ 
Sbjct: 41  TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100

Query: 557 FTG 565
             G
Sbjct: 101 ING 103

---

>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           T++VG+L ++  E  ++  F  SG++  I +  ++    + G+ FVE++S A A+ A++ 
Sbjct: 41  TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100

Query: 557 FTG 565
             G
Sbjct: 101 ING 103

---

>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           T++VG+L ++  E  ++  F  SG++  I +  ++    + G+ FVE++S A A+ A++ 
Sbjct: 41  TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100

Query: 557 FTG 565
             G
Sbjct: 101 ING 103

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           +++G L +   +  L   FG  GEV    V+R+  T +S G+GFV F   A  DK L
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           +++G L +   +  L   FG  GEV    V+R+  T +S G+GFV F   A  DK L
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           +++G L +   +  L   FG  GEV    V+R+  T +S G+GFV F   A  DK L
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS  +   +   +++G L +    + L + F   GE+    V+R+  T +S G+GFV F 
Sbjct: 11  GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

Query: 524 SHASADKAL 550
             AS DK L
Sbjct: 71  DPASVDKVL 79

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS  +   +   +++G L +    + L + F   GE+    V+R+  T +S G+GFV F 
Sbjct: 11  GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70

Query: 524 SHASADKAL 550
             AS DK L
Sbjct: 71  DPASVDKVL 79

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           +I+VG+L Y + E  L   F   G V  +++  +R+TG+  G+GFVE  + A    A++ 
Sbjct: 2   SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61

Query: 557 FTG 565
             G
Sbjct: 62  LDG 64

---

>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/67 (28%), Positives = 39/67 (58%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +++ T++VG+L ++  E  +H  F  SG+V  I +  ++    + G+ FVE+++ A A  
Sbjct: 29  KQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGT 88

Query: 545 ALQNFTG 565
           A++   G
Sbjct: 89  AMRFING 95

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           K ++VG ++  M+EN L + F   G VV+  ++ +++T +  G+ FVEF  +   DK
Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164



 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E  + +++G L Y   +  L   F   GE+V + V+++ +T +S G+GF+ +      D 
Sbjct: 14  EHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDD 73

Query: 545 ALQNFTGH 568
           A QN   H
Sbjct: 74  A-QNARPH 80

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +2

Query: 344 GSGGNGCEENKT-IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           G GG+    N T + V  L   M +  L+  F   G + T +++++ +TG S GY FV+F
Sbjct: 91  GGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDF 150

Query: 521 FSHASADKALQNFTGHVMPN 580
            S   A  A++   G  + N
Sbjct: 151 ASEIDAQNAIKTVNGITVRN 170

---

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E +  I+V  L +   E  L   F   G++  +++ RN++TG S  YGF+EF +   A  
Sbjct: 88  EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMI 147

Query: 545 ALQNFTGHVM 574
           A ++   +++
Sbjct: 148 AQESMNNYLL 157

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L +  +E  L   F   G++  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 560 TG 565
            G
Sbjct: 68  NG 69

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L +  +E  L   F   G++  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 560 TG 565
            G
Sbjct: 68  NG 69

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L +  +E  L   F   G++  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 560 TG 565
            G
Sbjct: 68  NG 69

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L +  +E  L   F   G++  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 560 TG 565
            G
Sbjct: 68  NG 69

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L +  +E  L   F   G++  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 560 TG 565
            G
Sbjct: 68  NG 69

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 20/65 (30%), Positives = 40/65 (61%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   LH+ F   G++++ KV  + + G ++GYGFV F S  SA+ A+++ 
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228

Query: 560 TGHVM 574
            G ++
Sbjct: 229 NGMLL 233



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ- 553
           +++VG+L   + E  L   F   G V +I+V R+  T +S GY +V F +    +KAL  
Sbjct: 81  SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140

Query: 554 -NFT 562
            N+T
Sbjct: 141 LNYT 144

---

>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/49 (32%), Positives = 32/49 (65%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 526
           +++G L   + E++++N     G++   ++ R+++TG S+GY FVEF S
Sbjct: 49  VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFES 97

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G G  G  ++KT++V  L     E  L   F  S   V  +++ +R TG S+G+GFV+F 
Sbjct: 492 GGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFS 548

Query: 524 SHASADKA 547
           +   A  A
Sbjct: 549 TAEDAKAA 556

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I++ +L   +D   L   F   G +++ KV  +  TG+S+GYGFV+F    SA  A+   
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196

Query: 560 TGHVM 574
            G +M
Sbjct: 197 NGMLM 201



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++V +L   + E+ L   FG  G V++  V+   Q+G S  +GFV F    +A  A++  
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289

Query: 560 TG 565
            G
Sbjct: 290 NG 291

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 359 GCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           G +E   ++VG L +   +  L + F   GEVV   +++++ T QS G+GFV+F
Sbjct: 5   GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++G L +  +E+ L   F   G +  + V+++R+T +S G+GFV F +   A  A+   
Sbjct: 7   LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66

Query: 560 TG 565
            G
Sbjct: 67  NG 68

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
 Frame = +2

Query: 344 GSGGNGC------EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGY 505
           GSGG+          N  + V  L   M +  L+  F   G + T +++R+ +TG S GY
Sbjct: 109 GSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGY 168

Query: 506 GFVEFFSHASADKALQNFTGHVMPN 580
            FV+F S   + +A++   G  + N
Sbjct: 169 AFVDFTSEMDSQRAIKVLNGITVRN 193

---

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++   +++ +L   MDE  L N   P G+V++ +V+R+  +G S G GF    S    + 
Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEA 196

Query: 545 ALQNFTG 565
            + +F G
Sbjct: 197 VIGHFNG 203



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +2

Query: 440 PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           P G++V+ K I ++ T + +GYGFV+F S A+A KA+
Sbjct: 84  PYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120

---

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           ++   +++ +L   MDE  L N   P G+V++ +++R+  +G S G GF    S    + 
Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEA 196

Query: 545 ALQNFTG 565
            + +F G
Sbjct: 197 VIGHFNG 203



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +2

Query: 440 PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           P G++V+ K I ++ T + +GYGFV+F S A+A KA+
Sbjct: 84  PYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           N  + V  L   M +  L+  F   G + T +++R+ +TG S GY FV+F S   + +A+
Sbjct: 126 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAI 185

Query: 551 QNFTGHVMPN 580
           +   G  + N
Sbjct: 186 KVLNGITVRN 195

---

>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 526
           ++V  L   +DE  + + F   G V   ++ R+++TG S+GY FVEF S
Sbjct: 47  VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFES 95

---

>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           + +TI+VG L   + E  L+N F P G++  I++  + ++ +  G+ F+E+     A  A
Sbjct: 4   DKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAA 63

Query: 548 LQN 556
           + N
Sbjct: 64  IDN 66

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G       E+KT+ + +L Y   E  L   F    E  T   +   Q G+S+GY F+EF 
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFA 531

Query: 524 SHASADKALQN 556
           S   A +AL +
Sbjct: 532 SFEDAKEALNS 542



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS     + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F 
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFN 618

Query: 524 SHASADKA 547
           S   A  A
Sbjct: 619 SEEDAKAA 626

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G       E+KT+ + +L Y   E  L   F    +   IKV +N+Q G+S+GY F+EF 
Sbjct: 475 GKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFA 530

Query: 524 SHASADKALQN 556
           S   A +AL +
Sbjct: 531 SFEDAKEALNS 541



 Score = 37.0 bits (84), Expect = 0.041
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS     + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F 
Sbjct: 561 GSPNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFN 617

Query: 524 SHASADKA 547
           S   A  A
Sbjct: 618 SEEDAKAA 625

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G       E+KT+ + +L Y   E  L   F    E  T   +   Q G+S+GY F+EF 
Sbjct: 475 GKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFA 530

Query: 524 SHASADKALQN 556
           S   A +AL +
Sbjct: 531 SFEDAKEALNS 541



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS     + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F 
Sbjct: 561 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFN 617

Query: 524 SHASADKA 547
           S   A  A
Sbjct: 618 SEEDAKAA 625

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 344 GSGGNGCE--ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVE 517
           G+ G+  E  E   +++  L     +  L   F P G VV+ KV  ++QT  S+ +GFV 
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

Query: 518 FFSHASADKALQNFTG 565
           + +  SA  A+Q+  G
Sbjct: 449 YDNPVSAQAAIQSMNG 464

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 344 GSGGNGCE--ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVE 517
           G+ G+  E  E   +++  L     +  L   F P G VV+ KV  ++QT  S+ +GFV 
Sbjct: 389 GAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 448

Query: 518 FFSHASADKALQNFTG 565
           + +  SA  A+Q+  G
Sbjct: 449 YDNPVSAQAAIQSMNG 464

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G       E+KT+ + +L Y   E  L   F    E  T   +   Q G+S+GY F+EF 
Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFA 532

Query: 524 SHASADKALQN 556
           S   A +AL +
Sbjct: 533 SFEDAKEALNS 543



 Score = 37.4 bits (85), Expect = 0.032
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS     + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F 
Sbjct: 563 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFN 619

Query: 524 SHASADKA 547
           S   A  A
Sbjct: 620 SEEDAKAA 627

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHA 532
           G G  E+KT+ V +L Y   E  L   F    +  +IK+ +N Q G+ +GY FVEF +  
Sbjct: 454 GGGERESKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQ-GRPKGYAFVEFPTAE 509

Query: 533 SADKALQN 556
            A +AL +
Sbjct: 510 DAKEALNS 517



 Score = 37.0 bits (84), Expect = 0.041
 Identities = 21/64 (32%), Positives = 40/64 (62%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           +T++V +L Y + E+ + N F  + EV   +++ N++ G S+G  ++EF + A A+KAL+
Sbjct: 371 RTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALE 426

Query: 554 NFTG 565
              G
Sbjct: 427 EKQG 430



 Score = 36.6 bits (83), Expect = 0.054
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +++KT++V  L     E  L   F  S   ++ +++ +R TG S+G+GFV+F S   A  
Sbjct: 550 QQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKA 606

Query: 545 A 547
           A
Sbjct: 607 A 607

---

>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 404 WMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM-PN 580
           +  E+ L   F P G++  I V+R++ T +S+G  FV+F   + A +A++   G  + PN
Sbjct: 35  YTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           E  L   F   G++    VI+N+ TG+S+G G+V +   + A +A++N
Sbjct: 133 EEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180

---

>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM-PN 580
           E+ L   F P G++  I V+R++ T +S+G  FV+F   + A +A++   G  + PN
Sbjct: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           E  L   F   G++    +I+N+ TG+S+G G+V +   + A +A++N
Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E+   ++VG L +   +  L + F   GEVV   +  +  TG+S G+GF+ F   AS +K
Sbjct: 65  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 124

Query: 545 AL 550
            L
Sbjct: 125 VL 126

---

>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/67 (29%), Positives = 38/67 (56%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           K + V ++ +   +  L   FG  G+++ +++I N +   S+G+GFV F + A AD+A +
Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 174

Query: 554 NFTGHVM 574
              G V+
Sbjct: 175 KLHGTVV 181

---

>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12|
          Length = 426

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 16/62 (25%), Positives = 35/62 (56%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +  ++++VG+L +   E  L   F   G +  ++++R+ +T   +G+ +V+F    S +K
Sbjct: 256 DRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNK 315

Query: 545 AL 550
           AL
Sbjct: 316 AL 317

---

>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/67 (29%), Positives = 38/67 (56%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           K + V ++ +   +  L   FG  G+++ +++I N +   S+G+GFV F + A AD+A +
Sbjct: 116 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 173

Query: 554 NFTGHVM 574
              G V+
Sbjct: 174 KLHGTVV 180

---

>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7|
          Length = 462

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSG--EVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG   +W  +  L       G  +VV +K   NR  GQS+GY  V   S  S  K L+
Sbjct: 84  VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 143

Query: 554 NFTGHVM 574
              G V+
Sbjct: 144 LLPGKVL 150

---

>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7|
          Length = 471

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSG--EVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG   +W  +  L       G  +VV +K   NR  GQS+GY  V   S  S  K L+
Sbjct: 84  VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 143

Query: 554 NFTGHVM 574
              G V+
Sbjct: 144 LLPGKVL 150

---

>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7|
           (Cleavage and polyadenylation specificity factor 59 kDa
           subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor
           Im 59-kDa subunit)
          Length = 471

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSG--EVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG   +W  +  L       G  +VV +K   NR  GQS+GY  V   S  S  K L+
Sbjct: 84  VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 143

Query: 554 NFTGHVM 574
              G V+
Sbjct: 144 LLPGKVL 150

---

>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/67 (29%), Positives = 38/67 (56%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           K + V ++ +   +  L   FG  G+++ +++I N +   S+G+GFV F + A AD+A +
Sbjct: 121 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 178

Query: 554 NFTGHVM 574
              G V+
Sbjct: 179 KLHGTVV 185

---

>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 353 GNGCEENKTIWVGDLQYWMDENYLHNCF-GPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           GN C    +I+VGDL   + E+ L   F          K++ ++ TG S+GYGFV+F + 
Sbjct: 160 GNNC----SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNS 215

Query: 530 ASADKALQNFTG 565
                AL    G
Sbjct: 216 DEQQLALSEMQG 227

---

>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +2

Query: 356 NGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHAS 535
           N  ++N  I++G+L   + E  +   F   G  V + + R+  TG+S+G+ ++++    S
Sbjct: 25  NEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRS 84

Query: 536 ADKALQNFTG 565
              A+ N  G
Sbjct: 85  TILAVDNLNG 94

---

>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 410 DENYLHN-CFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           DEN L      P   +  + V+RN++TG+S G  FV F S   A++AL+   G
Sbjct: 203 DENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDG 255

---

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +  + ++VG L +   E  L   F   G+V  ++++R+ +T   +G+ +V+F    S ++
Sbjct: 271 DHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQ 330

Query: 545 AL 550
           AL
Sbjct: 331 AL 332

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 344 GSGGNGCE-EN-KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVE 517
           GSG    E EN + I+VG L     ++ +   +   GE+  I V+R+  T +S G+GFV 
Sbjct: 11  GSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70

Query: 518 FFSHASADKALQ 553
           F      D A++
Sbjct: 71  FSGKTEVDAAMK 82

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E+   ++VG L +   +  L + F   GEVV   +  +  TG+S G+GF+ F   +S +K
Sbjct: 72  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131

Query: 545 AL 550
            L
Sbjct: 132 VL 133

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           GS     + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F 
Sbjct: 564 GSPNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFN 620

Query: 524 SHASADKA 547
           S   A  A
Sbjct: 621 SEEDAKAA 628



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFF 523
           G       E+KT+ + +L Y   E  L   F    +   IKV +N   G+S+GY F+EF 
Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFA 533

Query: 524 SHASADKALQN 556
           S   A +AL +
Sbjct: 534 SFEDAKEALNS 544

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 36.6 bits (83), Expect = 0.054
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           E +  ++VG+L +   +  L   FG  G++  ++++    TG+ +G+GFV+F    +  K
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284

Query: 545 ALQ 553
           A++
Sbjct: 285 AME 287

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 36.6 bits (83), Expect = 0.054
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ +L   +D   L+  F   G +++ KV  +   G+S+GYGFV+F    +A  A+   
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192

Query: 560 TGHVM 574
            G ++
Sbjct: 193 NGMLL 197



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++V +L   + ++ L   FG  G++ +  V+++ Q+G S  +GFV F S  +A  A++  
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 285

Query: 560 TG 565
            G
Sbjct: 286 NG 287

---

>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 36.6 bits (83), Expect = 0.054
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           I++G +   + E  L   F   G V  +++ R+++TG S+GY +VEF
Sbjct: 43  IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89

---

>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           F   G++++ +VIR+++TG S  Y F+EF +  S +KA
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++VGDL   + E+ L+  F P+G +   ++ R+  T    GYG+V F   A A+ AL
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++V +L + +    L + F      ++ KVI +R +G+S G+GF+ F S  + + AL
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275

---

>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM 574
           E  L   F P G++  I V+R++ T +S+G  FV+F   + A +A++   G  +
Sbjct: 38  ELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQN 556
           E  L   F   G++    +I+N+ TG+S+G G+V +   + A +A++N
Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180

---

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG +     E  +   F   G V+ + +I++++TGQ +G  FV++ +   AD+A++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 35.8 bits (81), Expect = 0.092
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           + +KT++V  L     E  L   F  S   V  +++ +R+TG S+G+GFV+F S   A  
Sbjct: 565 QPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKA 621

Query: 545 A 547
           A
Sbjct: 622 A 622



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E+KT+ + +L Y   +  L   F    +   IKV +N   G+ +GY F+EF S   A +A
Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFE---KATFIKVPQNPH-GKPKGYAFIEFASFEDAKEA 539

Query: 548 LQN 556
           L +
Sbjct: 540 LNS 542

---

>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic|
           region
          Length = 781

 Score = 35.8 bits (81), Expect = 0.092
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
 Frame = +2

Query: 404 WMDENYLHNCFGPSGEVVTIKVI-------RNRQ------------TGQSEGYGFVEFFS 526
           W DE+ L++ +   GE++++KVI       + RQ             G S GYGFV F S
Sbjct: 551 WTDED-LYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRGYGFVSFES 609

Query: 527 HASADKALQNFTGH 568
              A KA+ N  G+
Sbjct: 610 PLDAAKAILNTDGY 623



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           I+VG +   +    L   F   G ++++K+I ++  G+  GYGF+ +   + A   ++  
Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256

Query: 560 TGHVM 574
            G  +
Sbjct: 257 NGRTV 261

---

>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 605

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           FG  G++++ +VIR+++TG S  Y F+E+   AS + A     G
Sbjct: 271 FGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKMQG 314

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E KT+++ +L +  +E  L       GE+  ++++ +  T  S+G  F +F +  +A K 
Sbjct: 332 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 391

Query: 548 L 550
           L
Sbjct: 392 L 392



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 386 VGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           + +L +   E+ L   F   G V+ + + R +  G+  G+GFV+F +   A KAL+
Sbjct: 117 IRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALK 171



 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 461 IKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           +K +     GQS GY F EF  H  A KAL+
Sbjct: 527 LKGVHGNMKGQSLGYAFAEFQEHEHALKALR 557

---

>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           I++G +   + E  L   F   G V  +++ R+++TG S+GY +VE+
Sbjct: 43  IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89

---

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           T++VG +   +DEN +   F   G V  +K+I  R  G  +GYGFV F
Sbjct: 48  TLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR-GGICKGYGFVYF 94

---

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           + +I+VG+L Y      L   F   G+VV   +I +R  G   G G VEF +    D+A+
Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAI 192

Query: 551 QNFTG 565
           + + G
Sbjct: 193 RQYDG 197

---

>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           E  +H+ F   GE+  I +  +R+TG  +GY  VE+ ++  A  A++   G
Sbjct: 86  EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 136

---

>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           E  +H+ F   GE+  I +  +R+TG  +GY  VE+ ++  A  A++   G
Sbjct: 86  EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 136

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQ---SEGYGFVEFFSHASADKA 547
           T+++ +L +   E  L   F   G V +  + + +       S G+GFVE+     A KA
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790

Query: 548 LQNFTGHVM 574
           L+   GHV+
Sbjct: 791 LKQLQGHVV 799

---

>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12|
          Length = 462

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPS--GEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           +  +TI+VG+L +   E  L   F      +V +++VIR+ +T   +G+  V+F    S 
Sbjct: 263 DNKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSV 322

Query: 539 DKAL 550
           +K+L
Sbjct: 323 NKSL 326

---

>NOP12_CANAL (Q5AHI7) Nucleolar protein 12|
          Length = 454

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPS--GEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           +  +TI+VG+L +   E  L   F      +V ++++IR+ +T   +G+  V+F    S 
Sbjct: 262 DNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSV 321

Query: 539 DKAL 550
           +KAL
Sbjct: 322 NKAL 325

---

>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 422 LHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           LH  F   G +++ +VIR+++TG S  Y F+EF +    ++A     G
Sbjct: 264 LHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQG 311

---

>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           E  L + F   GEV+ ++V ++ +TG S+G+GFV F  + +  K +
Sbjct: 117 EQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162

---

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G  G    + +WV  L        L N F   G+VV  KV+ N ++  +  YGFV   + 
Sbjct: 399 GRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTS 458

Query: 530 ASADKALQN 556
             A K + +
Sbjct: 459 DEATKCISH 467

---

>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G   C   + +WV  L        L + F   G+V+  KV+ N ++  +  YGFV   + 
Sbjct: 443 GRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTS 502

Query: 530 ASADKALQN 556
             A K + +
Sbjct: 503 DEATKCISH 511

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   +++G L +   +  L + F   GEVV   +  +  TG+S G+GFV F    S DK 
Sbjct: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154

Query: 548 L 550
           +
Sbjct: 155 M 155

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   +++G L +   +  L + F   GEVV   +  +  TG+S G+GFV F    S DK 
Sbjct: 95  EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154

Query: 548 L 550
           +
Sbjct: 155 M 155

---

>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           E  L   F   GEV+ ++V ++ +TG S+G+GFV F  + +  K +
Sbjct: 117 EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 162

---

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           KT++V  + Y   E+ L   F   G +  I ++ N+++G+  GY F+E+        A +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162

Query: 554 NFTG 565
           +  G
Sbjct: 163 HADG 166

---

>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           +   T++VG++   + +  L+  F     V+ IK  +++     +GY F+EF++   A  
Sbjct: 6   DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65

Query: 545 ALQNFTGHVMPNT 583
           A++     +M NT
Sbjct: 66  AIK-----IMNNT 73

---

>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDE--NYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           +++ T++V +L Y M E    L   F   GEVV I+ I + + G   GY +VEF    SA
Sbjct: 701 KDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR-GDFRGYCYVEFKEEKSA 759

Query: 539 DKALQ 553
            +AL+
Sbjct: 760 LQALE 764

---

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G + C  N   WV  L        L N F   G+VV  KV+ N ++  +  YGFV   + 
Sbjct: 400 GRSSCGRN--FWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTA 457

Query: 530 ASADKALQN 556
             A K + +
Sbjct: 458 EEATKCINH 466

---

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 440 PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           P G +    ++ + +TGQS+GYGF E+    SA +A  +  G
Sbjct: 154 PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 195

---

>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           F   G++++ +VIR+++TG S  Y F+EF S    ++A     G
Sbjct: 268 FSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQG 311

---

>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENY--LHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           +++ T++V +L Y ++E    L   F   GEVV I+ I + + G   GY +VEF    SA
Sbjct: 701 KDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNR-GDFRGYCYVEFGEEKSA 759

Query: 539 DKALQ 553
            +AL+
Sbjct: 760 QQALE 764

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   +++G L +   +  L + F   G+VV   +  +  TG+S G+GFV F    S DK 
Sbjct: 93  EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152

Query: 548 L 550
           +
Sbjct: 153 M 153

---

>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3)
          Length = 981

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDEN--YLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 538
           +++ T++V +L Y M E    L   F   GEVV I+ I + + G   GY +VEF    SA
Sbjct: 719 KDSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNR-GDFRGYRYVEFKEEKSA 777

Query: 539 DKALQ 553
            +AL+
Sbjct: 778 LQALE 782

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 350 GGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSH 529
           G + C  N   WV  L        L N F   G+VV  KV+ N ++  +  YGFV   + 
Sbjct: 422 GRSSCGRN--FWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTA 479

Query: 530 ASADKALQN 556
             A K + +
Sbjct: 480 EEATKCINH 488

---

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           T  VG+L + + EN L + FG    V +I+++ +  T +S G+G+VEF +  +   AL
Sbjct: 95  TAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL 150

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   +++ ++ Y   E+     F P GE+  + +  + +TGQS+G+ +V F +  +A  A
Sbjct: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387

Query: 548 L-----QNFTG---HVMP 577
                 Q F G   H++P
Sbjct: 388 FVELDKQIFQGRLLHILP 405

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++V +L   +    L + F   G +V+ KV    + G+S GYGFV+F    +A  A+Q  
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172

Query: 560 TGHVM 574
              ++
Sbjct: 173 NSTIV 177

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL--- 550
           +++ ++ Y   E      F P GE+  + V  + +TGQS+G+ +V F    +A  A    
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406

Query: 551 --QNFTG---HVMP 577
             Q F G   H++P
Sbjct: 407 DKQIFQGRLLHILP 420

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 377 TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQ---SEGYGFVEFFSHASADKA 547
           T+++ +L +   E  L   F   G + +  + + +       S G+GFVE+     A KA
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782

Query: 548 LQNFTGHVM 574
           L+   GH +
Sbjct: 783 LKQLQGHTV 791



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQ-TGQSEGYGFVEFFSHASADKA 547
           I V ++ +  ++  +   F   GE+ T+++ +    TG   G+GFV+F +   A KA
Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882

---

>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           E   ++V  +     E+ +   F   GE+  I +  +R+TG S+GY  VE+ +H  A  A
Sbjct: 71  EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 130

Query: 548 LQNFTG 565
            +   G
Sbjct: 131 KEALNG 136

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           KT++V  + Y   E+ L   F   G +  I ++ ++++G+  GY F+E+        A +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162

Query: 554 NFTG 565
           +  G
Sbjct: 163 HADG 166

---

>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           N+T+++G+L   + E+ L   F   G V+T   I+    GQ+  YGF++F +   + +A 
Sbjct: 373 NRTLFLGNLDITVTESDLRRAFDRFG-VITEVDIKRPSRGQTSTYGFLKFENLDMSHRAK 431

Query: 551 QNFTGHVM 574
              +G ++
Sbjct: 432 LAMSGKII 439

---

>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           F   G++++ +VIR+++TG S  Y F+EF    S ++A
Sbjct: 273 FSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEA 310

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           KT++V  + Y   E+ L   F   G +  I ++ ++++G+  GY F+E+        A +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162

Query: 554 NFTG 565
           +  G
Sbjct: 163 HADG 166

---

>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ-- 553
           +++GDL   + E  L   F      V+ KV  +  T +S G+G++ F     A+KA++  
Sbjct: 93  LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152

Query: 554 NFT 562
           N+T
Sbjct: 153 NYT 155

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +2

Query: 365 EENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           EE   +++ ++ Y   E    + F   G +  + +  + +TG+S+G+ +V+F     A +
Sbjct: 307 EETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATR 366

Query: 545 AL-----QNFTG---HVMP 577
           A      Q F G   H++P
Sbjct: 367 AYRSLDKQIFQGRLLHILP 385



 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 440 PSGEVVTIKVI---RNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM 574
           P   V T+K     +N     S G+GFVEF +   A+ A+    GHV+
Sbjct: 641 PGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVL 688

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 461 IKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTGH 568
           +K +  +  GQS GY F EF  H  A +AL++F  +
Sbjct: 517 LKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNN 552

---

>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           F   G +++ +VIR+++TG S  Y F+EF +    ++A     G
Sbjct: 268 FSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQG 311

---

>RAVR1_RAT (Q5XI28) Protein raver-1|
          Length = 748

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 440 PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           P G +    ++ + +TG S+GYGF E+    SA +A  +  G
Sbjct: 154 PFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195

---

>RAVR1_MOUSE (Q9CW46) Protein raver-1|
          Length = 748

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 440 PSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           P G +    ++ + +TG S+GYGF E+    SA +A  +  G
Sbjct: 154 PFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195

---

>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           F   G++++ +V+R++++G S  Y F+EF    +A++A
Sbjct: 266 FSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQA 303

---

>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           +T+++  + Y   E+ L   F   G +  I +I ++++G+ +GY F+E+
Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY 150

---

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 434 FGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKA 547
           F   G++++ +VI++++TG S  Y F+EF     A++A
Sbjct: 282 FSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERA 319

---

>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of|
           deformed) (52-kDa bracketing protein) (B52 protein)
          Length = 375

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           ++VG L Y + E  L   F   G    I +I+N       GYGFVEF  +  AD A+   
Sbjct: 5   VYVGGLPYGVRERDLERFFKGYGRTRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 56

Query: 560 TG 565
            G
Sbjct: 57  NG 58

---

>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           ++  ++VG+L + +DEN L   F   G VV +++      G+   +GFV F
Sbjct: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379

---

>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 368 ENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           ++  ++VG+L + +DEN L   F   G VV +++      G+   +GFV F
Sbjct: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379

---

>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 374 KTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEF 520
           KT++V  L Y   E+ +   F   G +  + ++ ++ T + +GY F+E+
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186

---

>NOP12_ASPFU (Q4WCH5) Nucleolar protein 12|
          Length = 538

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 446 GEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           G V +++V+R+R T   +G+ +V+F+     ++AL
Sbjct: 379 GNVESVRVVRDRTTRVGKGFAYVQFYDQVCVEEAL 413

---

>NOP12_EMENI (Q5BDC8) Nucleolar protein 12|
          Length = 520

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 437 GPSGE--VVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           GP+G   V +++V+R+R T   +G+ +V+F+     ++AL
Sbjct: 360 GPAGRGNVESVRVVRDRSTRVGKGFAYVQFYDQNCVEEAL 399

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 443 SGEVVTIKVI---RNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM 574
           SG V   KVI   +    G+S GYGFVEF  H +A   L+    H +
Sbjct: 532 SGVVKQAKVIMEVKGSTAGRSRGYGFVEFRDHKNALMGLRWLNCHAV 578

---

>MYO1_YEAST (P08964) Myosin-1 (Type II myosin)|
          Length = 1928

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = +2

Query: 347 SGGNGCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFS 526
           +GG  C  N  +W+ D +    E ++       GE+++  + +N+ TGQ E  G V    
Sbjct: 2   TGGQSCSSNMIVWIPDEK----EVFV------KGELMSTDINKNKFTGQEEQIGIVHPLD 51

Query: 527 HASADKALQNFTGHVMP 577
                  +Q     V P
Sbjct: 52  STEVSNLVQVRISDVFP 68

---

>NOP12_GIBZE (Q4IQW0) Nucleolar protein 12|
          Length = 559

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 413 ENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           E  L   F   G+V  ++V+R+ +T   +G+ +V+F+     + AL
Sbjct: 365 EEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQFYDANDVEAAL 410

---

>WUS_ARATH (Q9SB92) Protein WUSCHEL (AtWUS) (Plant growth activator 6)|
          Length = 292

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 344 GSGGNGCEENKTIWVGDLQY--WMDENYLHNCF-GPSGEVVTIKVIRNRQTGQSEGYG-F 511
           GSGG  C +  T W    +    + E Y +N    P+ + +     R RQ G+ EG   F
Sbjct: 26  GSGGYTCRQTSTRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVF 85

Query: 512 VEFFSHASADKALQNFTG 565
             F +H + ++  + F G
Sbjct: 86  YWFQNHKARERQKKRFNG 103

---

>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit|
           (eIF3 p90) (Cell cycle regulation and translation
           initiation protein)
          Length = 763

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +2

Query: 422 LHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTG 565
           L + F  +G+VV ++   +  TG+++G+ FVE  S   A K +++F G
Sbjct: 99  LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 146

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFV-----EFFSHASADK 544
           +++ ++ Y   E      F P GE+  + V  + +TGQS+G+ +V     E  ++A  + 
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362

Query: 545 ALQNFTG---HVMP 577
             Q F G   H++P
Sbjct: 363 DKQIFQGRLLHILP 376

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADK 544
           I+VG +     E  L   F   G V + K+I +R  G S+GYGFV F +   A +
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQR 88

---

>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++G L Y + E  +   F   G ++ + +          GYGFVEF     AD A+   
Sbjct: 4   VYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYEL 55

Query: 560 TG 565
            G
Sbjct: 56  NG 57

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNF 559
           +++ ++ Y   E+     F P GE+  + V  + +TG S+G+ +V F   A  ++A+Q +
Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLF---AKPEEAVQAY 383

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = +2

Query: 380 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQ 553
           ++VG +   + E+ L   F  +G +  ++++ +  +GQ+ GY F+ F    +A +A++
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224

---

>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -2

Query: 543 LSADAWEKNSTKPYPSDCPVCLLRITFMVTTSPLGPKQLWR*FSSIQYWRSPTQIVLFSS 364
           +S D  E+N+  P  +DCP+    + F++ TS     Q            SPT I+LF  
Sbjct: 26  ISPDTTERNNNCPEKTDCPI---HVYFVLDTSESVTMQ------------SPTDILLFHM 70

Query: 363 QPFPP 349
           + F P
Sbjct: 71  KQFVP 75

---

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 371 NKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKAL 550
           ++T++VG+L   + E  + + F   G VV I +   +   +  GY FVEF     A+ A+
Sbjct: 6   SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAI 62

Query: 551 QNFTGH 568
               G+
Sbjct: 63  HGRDGY 68

---

>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (S1-1 protein)
          Length = 852

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 461 IKVIRNRQTGQSEGYGFVEF 520
           ++++RN+ +GQS G+ FVEF
Sbjct: 82  VRLMRNKSSGQSRGFAFVEF 101

---

>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 446 GEVVTIKVIRNRQTGQSEGYGFVEFFSHASADKALQNFTGHVM 574
           G +    ++ +  TG S+GYGFVE+     A KA     G  M
Sbjct: 155 GNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQM 197

---

>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (DXS8237E)
          Length = 929

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 461 IKVIRNRQTGQSEGYGFVEF 520
           ++++RN+ +GQS G+ FVEF
Sbjct: 159 VRLMRNKSSGQSRGFAFVEF 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,309,136
Number of Sequences: 219361
Number of extensions: 644951
Number of successful extensions: 1990
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---