ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart34e10 |
|---|---|
| Clone Library Name | barley_pub |
>HLDE_HELPJ (Q9ZKZ0) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 463 Score = 33.1 bits (74), Expect = 0.47 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = -1 Query: 325 QLVQPLHARQHVHQDLHRAELALEERDVLASPLEHRVPVSEQGGELDDDGAQRSCPHLAR 146 +L Q LH + H +L +A L+E +A PL V +SEQG + G +CP +A+ Sbjct: 194 ELEQALHLKLDSHANLSKALQILQETYHIAMPL---VTLSEQGIAFLEKGELVNCPTIAK 250 Query: 145 D 143 + Sbjct: 251 E 251
>RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (C-RAF) Length = 638 Score = 31.6 bits (70), Expect = 1.4 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Frame = +2 Query: 116 WHLLCSGFFISSKMGTGALGS---------VIVKLATLLGDGYTMLKGTRKDIAFLEREL 268 W ++ S +SS++G+G+ G+ V VK+ + L+ R ++A L R+ Sbjct: 333 WEIIASEVMLSSRIGSGSFGTVYKGKWHGDVAVKILKVTDPTPEQLQAFRNEVAVL-RKT 391 Query: 269 RTMQILVNMLAGMEGLDKLAMD---CEGS 346 R + IL+ M G D LA+ CEGS Sbjct: 392 RHVNILLFM--GYMTKDNLAIVTQWCEGS 418
>KRAF1_CAEEL (Q07292) Raf homolog serine/threonine-protein kinase (EC 2.7.11.1)| (Abnormal cell lineage protein 45) Length = 813 Score = 31.2 bits (69), Expect = 1.8 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 104 HHQPWHLLCSGFFISSKMGTGALGSV 181 HH+ W +L + F I K+G+G+ G+V Sbjct: 470 HHEDWEILPNEFIIQYKVGSGSFGTV 495
>VNST_CVMA5 (P19738) 30 kDa nonstructural protein (NS2 protein) (Protein 2A)| Length = 261 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -1 Query: 526 DAGLELLDLGSNSMESKYCLELS 458 DAGLEL+ +GS+ ++ YC ELS Sbjct: 159 DAGLELVKIGSSKIDGFYCSELS 181
>HLDE_HELPY (O25529) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 461 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -1 Query: 325 QLVQPLHARQHVHQDLHRAELALEERDVLASPLEHRVPVSEQGGELDDDGAQRSCPHLAR 146 +L LH + H +L +A L+E +A PL V +SEQG + G +CP +A+ Sbjct: 194 ELEHALHLKLDSHANLSKALQILKETYHIAMPL---VTLSEQGIAFLEKGELVNCPTIAK 250 Query: 145 D 143 + Sbjct: 251 E 251
>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)| Length = 4687 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = -1 Query: 298 QHVHQDLHRAELALEERDVLASPLEHRVPVSEQGGELDDDGAQRSCPHLARDEEAATQQV 119 + + + LHR ELA +E+ L LE + Q + D + + + L R++E Q+ Sbjct: 2551 EEIGEKLHRTELATQEKVTLVQTLE----IQRQQSDQDAERLREAIAELEREKEKLKQEA 2606 Query: 118 PWLMV 104 L + Sbjct: 2607 KLLQL 2611
>PGH1_SHEEP (P05979) Prostaglandin G/H synthase 1 precursor (EC 1.14.99.1)| (Cyclooxygenase-1) (COX-1) (Prostaglandin-endoperoxide synthase 1) (Prostaglandin H2 synthase 1) (PGH synthase 1) (PGHS-1) (PHS 1) Length = 600 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -2 Query: 258 SRNAMSLRVPLSIVYPSPSKVASLTMTEPNAPVPI 154 SR ++SLR PL ++ SPS V S +P AP P+ Sbjct: 2 SRQSISLRFPLLLLLLSPSPVFS---ADPGAPAPV 33
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = -1 Query: 298 QHVHQDLHRAELALEERDVLASPLEHRVPVSEQGGELDDDGAQRSCPHLARDEEAATQQV 119 + + + LHR ELA +E+ L LE + Q + D + + + L R++E Q+ Sbjct: 2548 EEIGEKLHRTELATQEKVTLVQTLE----IQRQQSDHDAERLREAIAELEREKEKLQQEA 2603 Query: 118 PWLMV 104 L + Sbjct: 2604 KLLQL 2608
>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate| filament-associated protein) (IFAP300) (Fragment) Length = 4473 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = -1 Query: 298 QHVHQDLHRAELALEERDVLASPLEHRVPVSEQGGELDDDGAQRSCPHLARDEEAATQQV 119 + + + LHR ELA +E+ L LE + Q + D + + + L R++E Q+ Sbjct: 2337 EEIGEKLHRTELATQEKVTLVQTLE----IQRQQSDHDAERLREAIAELEREKEKLKQEA 2392 Query: 118 PWLMV 104 L + Sbjct: 2393 KLLQL 2397
>RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 29.6 bits (65), Expect = 5.3 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%) Frame = +2 Query: 116 WHLLCSGFFISSKMGTGALGS---------VIVKLATLLGDGYTMLKGTRKDIAFLEREL 268 W + S +S+++G+G+ G+ V VK+ ++ L+ R ++A L R+ Sbjct: 342 WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVL-RKT 400 Query: 269 RTMQILVNMLAGMEGLDKLAMD---CEGS-------MRELGYAMEECID 385 R + IL+ M G D LA+ CEGS ++E + M + ID Sbjct: 401 RHVNILLFM--GYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 447
>RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 29.6 bits (65), Expect = 5.3 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%) Frame = +2 Query: 116 WHLLCSGFFISSKMGTGALGS---------VIVKLATLLGDGYTMLKGTRKDIAFLEREL 268 W + S +S+++G+G+ G+ V VK+ ++ L+ R ++A L R+ Sbjct: 342 WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVL-RKT 400 Query: 269 RTMQILVNMLAGMEGLDKLAMD---CEGS-------MRELGYAMEECID 385 R + IL+ M G D LA+ CEGS ++E + M + ID Sbjct: 401 RHVNILLFM--GYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 447
>PWP1_YEAST (P21304) Periodic tryptophan protein 1| Length = 576 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +2 Query: 125 LCSGFFISSKMGTGALGSVIVKLATLLGDGYTMLKG 232 LCS FI M TGA+G VKL D T KG Sbjct: 428 LCSNKFIPGMMSTGAMGEKTVKLWKFPLDDATNTKG 463
>RAF_MSV36 (P00532) Serine/threonine-protein kinase transforming protein raf| (EC 2.7.11.1) Length = 323 Score = 29.3 bits (64), Expect = 6.9 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%) Frame = +2 Query: 116 WHLLCSGFFISSKMGTGALGS---------VIVKLATLLGDGYTMLKGTRKDIAFLEREL 268 W + S +S+++G+G+ G+ V VK+ ++ L+ R ++A L R+ Sbjct: 17 WKMEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVL-RKT 75 Query: 269 RTMQILVNMLAGMEGLDKLAMD---CEGS-------MRELGYAMEECID 385 R + IL+ M G D LA+ CEGS ++E + M + ID Sbjct: 76 RHVNILLFM--GYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 122
>LZTS1_HUMAN (Q9Y250) Leucine zipper putative tumor suppressor 1 (F37/esophageal| cancer-related gene-coding leucine-zipper motif) (Fez1) Length = 595 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 15/77 (19%) Frame = +2 Query: 242 DIAFLERELRTMQILVNMLAG---------------MEGLDKLAMDCEGSMRELGYAMEE 376 +I+ L+++L+ Q VN A +EGL+ D EG++R G +E Sbjct: 389 EISLLKQQLKESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEV 448 Query: 377 CIDRFMLRLDENDMEME 427 C + + +E ++ E Sbjct: 449 CENELQRKKNEAELLRE 465
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = +1 Query: 358 RLRHGGVHRPLHAPPRRERHGDGGRAIVPEEHRATAQDNICSP 486 R R+ G R PPRR R+ D R+ P HR D+ SP Sbjct: 767 RRRYSGDSRSPSPPPRR-RYADDSRSPSPPPHRRRYSDDSRSP 808 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,544,464 Number of Sequences: 219361 Number of extensions: 898653 Number of successful extensions: 4024 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3857 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4023 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
