ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart34d02 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 31.6 bits (70), Expect(2) = 0.049 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323 RRRP P PS R P P R +P R R+ A L+ + S+ + SR+ + P Sbjct: 308 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 367 Query: 322 RR 317 ++ Sbjct: 368 KK 369 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = -1 Query: 401 PLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 258 P HS PRR HR R R +P P R +P PP H + P Sbjct: 294 PSHSR-PRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 340 Score = 23.5 bits (49), Expect(2) = 0.049 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%) Frame = -1 Query: 326 APPHADPARSVPGPP-----LHSLAAPPR 255 +PP P R+V PP L A+PPR Sbjct: 365 SPPKKPPKRTVSSPPRKTRRLSPSASPPR 393
>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)| (L(1)omb) (Protein bifid) Length = 972 Score = 35.0 bits (79), Expect = 0.11 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = -2 Query: 478 GPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRAL--------ADLTDAYSTHAPS 341 GP SL S PRPRP +H+ R + S +TP +L A A S H+PS Sbjct: 834 GPRSLSSSPRPRPASHSPPTRPISMSPTTPPSLMKQPRGGGAGAGVAQSQHSPS 887
>NEK1_CAEEL (P84199) Serine/threonine-protein kinase D1044.8 (EC 2.7.11.1)| Length = 959 Score = 34.7 bits (78), Expect = 0.14 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = -2 Query: 487 RRPGPNSLPSGPRPRPGAHAAWPRCHAPSRS-TPR-----ALADLTDAYSTHAPSRTGAT 326 +RPG +S SG P + A R H+ S TPR L +TD YS PS A Sbjct: 742 KRPGRSSKTSGSGKLPPINPAPRRNHSMSAGETPRPSSIVCLPRITDKYSVMFPSAPSAI 801 Query: 325 PRRTQIQ 305 P R ++Q Sbjct: 802 PSRRRVQ 808
>Y498_MYCBO (P64712) Hypothetical protein Mb0498| Length = 201 Score = 32.7 bits (73), Expect = 0.54 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -2 Query: 133 VRRRRGEAWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 5 V R G A+L+G ALL AR +RP + G A IG+V + Sbjct: 60 VARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102
>Y488_MYCTU (P64711) Hypothetical protein Rv0488/MT0507| Length = 201 Score = 32.7 bits (73), Expect = 0.54 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -2 Query: 133 VRRRRGEAWLVGAALLTARVRFRPPAGATRKRGKACFIGLVSL 5 V R G A+L+G ALL AR +RP + G A IG+V + Sbjct: 60 VARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQM 102
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 32.7 bits (73), Expect = 0.54 Identities = 24/52 (46%), Positives = 26/52 (50%) Frame = -1 Query: 407 PIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPRA 252 P P PRR+ R H +D R PP A PAR P PP S APPRA Sbjct: 721 PPPGDPPPPRRARRSQRH----SDARGTPPPA-PARDPP-PPAPSPPAPPRA 766
>MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 575 Score = 32.7 bits (73), Expect = 0.54 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 13/66 (19%) Frame = -1 Query: 404 IPLHSTCPRRSHRCLF-----HPRALADGRDAPPHADP--------ARSVPGPPLHSLAA 264 +P S+ P +H L PRA + +APP ADP R++ GPP + A+ Sbjct: 267 LPARSSAPMPAHGRLDLVPFPQPRASPEPEEAPPSADPFLETLTRLVRALAGPP--ARAS 324 Query: 263 PPRASV 246 PPR ++ Sbjct: 325 PPRLAL 330
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 32.3 bits (72), Expect = 0.71 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323 RRRP P PS R P P R +P R R+ A L+ + S+ + SR+ + P Sbjct: 310 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPP 369 Query: 322 RR 317 ++ Sbjct: 370 KK 371
>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex| combs) Length = 1368 Score = 26.6 bits (57), Expect(2) = 0.75 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = -3 Query: 468 PSRLDHDHALAPTQHGLAAMPHPAPLHVPSQISPMP 361 P H H A + MP P PL +P ++ +P Sbjct: 889 PKHAGHGHGAAKRSCQMPTMPMPLPLPLPMPMTTIP 924 Score = 24.3 bits (51), Expect(2) = 0.75 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -1 Query: 353 PRALADGRD--APPHADPARSVPGPPLHSLAAPPRA 252 P AL + R+ AP H+ P++S P +S +PP A Sbjct: 956 PPALINLRNTAAPQHSFPSKSSPKVEANSKKSPPAA 991
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323 RRRP P PS R P P R +P R R+ A L+ + S+ + SR+ + P Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 371 Query: 322 RR 317 ++ Sbjct: 372 KK 373
>RGDSR_HUMAN (Q8IZJ4) Ral-GDS-related protein (hRGR)| Length = 473 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -2 Query: 481 PGPNSL-PSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332 P PN P P PRPG HA P+ P LADL A +P+ G Sbjct: 116 PEPNEAKPDDPAPRPGQHALTMPALEPA---PPLLADLGPALEPESPAALG 163
>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)| Length = 619 Score = 31.6 bits (70), Expect = 1.2 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = -2 Query: 478 GPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHA----PSRTGATPRRTQ 311 GP LPSGP GA A++P PS S+P + A + G T + Sbjct: 287 GPQLLPSGPSTSSGASASFP--SGPSSSSPGSAPTTVPVQMPKASRVQQALAGMTSVLSA 344 Query: 310 IQLEACLAR 284 I L CL+R Sbjct: 345 IGLPVCLSR 353
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP----RCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323 RRRP P PS R P P R +P R R+ A L+ + S+ + SR+ + P Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP 371 Query: 322 RR 317 ++ Sbjct: 372 KK 373
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 484 RPGPN-SLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLT 368 +PGP S G +P PG PR AP+ S P+A A+ T Sbjct: 62 KPGPAASARPGAKPTPGGPRPGPRTPAPAASAPQAPAEQT 101
>HPAB3_PSESM (Q2QCI9) Effector protein hopAB3 (Avirulence protein avrPtoB)| [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)] Length = 579 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -2 Query: 451 RPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPR 320 RP+ A AA P+ A R TP A DA ++H + G TP+ Sbjct: 89 RPQESAEAAAPQARAEERHTPEA-----DAAASHVRTEGGRTPQ 127
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 31.2 bits (69), Expect = 1.6 Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -1 Query: 407 PIPLHST----CPRRSHRCLFHPRALA---DGRDAPPHADPARSVPGPPLHSLAAP-PRA 252 P+ HS+ CPRR R PRA + G APP PAR P PP AP PRA Sbjct: 88 PLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGLSAPP-PPPARPPPPPPPPPPPAPRPRA 146
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -2 Query: 484 RPGPNSLPSGPRPRPGAHAAW-PRCHAPSRSTPR 386 RPGP P PRPGA A PR AP PR Sbjct: 188 RPGPRPHPGMMPPRPGASAGGPPRPQAPRPQAPR 221
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = -2 Query: 481 PGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALA--DLTDAYSTHAPSRTGATPRRTQI 308 PGP S S P+P+P PR S+PR+ + D + AP++T P R + Sbjct: 2847 PGPGSRSSSPKPKP---LPTPRSSPSGASSPRSSSPQDKNLPQKSTAPAKTKLDPPRERS 2903 Query: 307 QLEACLARPCT 275 + ++ P T Sbjct: 2904 KSDSYTLDPDT 2914
>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like| protein) (GTPase regulator associated with focal adhesion kinase) Length = 814 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 475 PNSLPSGPRPRPGAHAAWPRCHAPSRSTP 389 PNSLP P P +WP APS P Sbjct: 660 PNSLPPNPSPTSPLSPSWPMFSAPSSPMP 688
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%) Frame = -1 Query: 413 PCPIPLHST-CPRRSHRCLFHP---RALADGRDAPPHADPARSVP-------GPPLHSLA 267 P P+P+HS+ P + P + L GR+ PP P + P GP SLA Sbjct: 190 PTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLA 249 Query: 266 APP 258 PP Sbjct: 250 PPP 252
>PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7.11.1)| Length = 556 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = -2 Query: 478 GPNSLPSGPRPRPGAH---AAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATP 323 GP P P P PG + P H+P+ P+ T A + +A + ATP Sbjct: 329 GPVQTPYQPTPSPGPNPYGTPAPAAHSPAYGYPQQAGYQTPAPAPYAQQQAAATP 383
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -2 Query: 475 PNSLPSGPRPRPGAHAAWP 419 P P GP P PGAH A+P Sbjct: 53 PGQAPPGPYPGPGAHGAYP 71
>DNAE2_GLUOX (Q5HXU1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 901 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Frame = -2 Query: 448 PRPGAHAAWPRC-HAPSRS-----TPRALADLTDAYSTHAPSRTGATPRRTQIQLEACLA 287 P PG H AW C A SRS TP L T A+ TH+ S P I A Sbjct: 16 PAPGGHRAWIACSSALSRSAVLAGTPARLPVSTSAFLTHSFSVCAEQPILLAIDTIAVQR 75 Query: 286 RPCTAS 269 C+ S Sbjct: 76 DGCSPS 81
>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)| [Contains: Capsid protein VP24 (EC 3.4.21.97) (Assemblin) (Protease); Capsid protein VP22A; UL26.5 protein; C-terminal peptide] Length = 635 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = -2 Query: 484 RPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRT--GATPRRTQ 311 RP P+S P GP P +HA P +AP+ P + T AP T P T Sbjct: 536 RPPPHSAPYGPPQGPASHAPTPP-YAPAACPPGPPPPPCPSTQTRAPLPTEPAFPPAATG 594 Query: 310 IQLEA 296 Q EA Sbjct: 595 SQPEA 599
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/56 (41%), Positives = 29/56 (51%) Frame = -2 Query: 484 RPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRR 317 RPG +GP P P A AA PR PS S+ A A + A ++ AP+ A P R Sbjct: 414 RPGAPLARAGPPPSPPAPAAAPR---PSASS--ASATSSSAAASPAPAPEPARPPR 464
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTP 389 R +PGP P G PRP H PR S P Sbjct: 1498 RPKPGPPQAPQGSSPRPPTHYDPPRASNAISSDP 1531
>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 706 Score = 24.6 bits (52), Expect(2) = 5.8 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = -1 Query: 356 HPRALADGRDAPPHADPARSVPGPPLHSLAAPPRAS 249 +PR RD P P GPP + PPR S Sbjct: 614 NPRDSDKSRDLGPPPGPPLPADGPPPPPSSNPPRPS 649 Score = 23.1 bits (48), Expect(2) = 5.8 Identities = 8/13 (61%), Positives = 8/13 (61%) Frame = -2 Query: 475 PNSLPSGPRPRPG 437 P LP GP P PG Sbjct: 581 PRELPKGPPPAPG 593
>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A| precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55) Length = 471 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/55 (29%), Positives = 24/55 (43%) Frame = -1 Query: 422 ASLPCPIPLHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPP 258 +S P IP + +C R + + P + APPH +PGPP + P Sbjct: 280 SSSPVSIPPYISCDRSNFGAVASPSS----ETAPPHLKAGPILPGPPASTHLCTP 330
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 29.3 bits (64), Expect = 6.0 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 16/86 (18%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRS----------------TPRALADLTDAY 359 R +PGP P GP PRP R ++ S TPR A + Sbjct: 1498 RHKPGPPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGV---- 1553 Query: 358 STHAPSRTGATPRRTQIQLEACLARP 281 S P R PR+ ++ E L P Sbjct: 1554 SPFPPKRRERPPRKPELLQEESLPPP 1579
>XKR7_RAT (Q5GH56) XK-related protein 7| Length = 580 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -1 Query: 365 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 252 CL HP G AP P P GPP ++ +PPR+ Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475
>XKR7_MOUSE (Q5GH64) XK-related protein 7| Length = 580 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -1 Query: 365 CLFHPRALADGRDAPPHADPARSVP-GPPLHSLAAPPRA 252 CL HP G AP P P GPP ++ +PPR+ Sbjct: 437 CLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRS 475
>CXA12_HUMAN (Q5T442) Gap junction alpha-12 protein (Connexin-47) (Cx47)| (Connexin-46.6) (Cx46.6) Length = 439 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWP 419 RRRPGP P P P HA WP Sbjct: 115 RRRPGPRRAPRAHLPPP--HAGWP 136
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 24.3 bits (51), Expect(2) = 7.0 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 4/39 (10%) Frame = -2 Query: 481 PGPNSLPSGPRPRPGAHAAWPRCH----APSRSTPRALA 377 P P +GP PR A PR H S TP A A Sbjct: 1209 PPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAA 1247 Score = 23.1 bits (48), Expect(2) = 7.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -1 Query: 320 PHADPARSVPGPPLHSLAAPPRA 252 P A PAR + GP H+ P A Sbjct: 1279 PRAAPARRLTGPSRHARRCPHAA 1301
>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein homolog) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 960 Score = 26.2 bits (56), Expect(2) = 7.2 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAPSRST----PRAL 380 R PGP + GPRP P A P+ P + + PR L Sbjct: 134 RSDPGPPTEIPGPRPSPLKRAPGPKPQVPPKPSYLQMPRVL 174 Score = 21.2 bits (43), Expect(2) = 7.2 Identities = 8/20 (40%), Positives = 10/20 (50%) Frame = -1 Query: 308 PARSVPGPPLHSLAAPPRAS 249 P +P PP L A PR + Sbjct: 176 PPEPIPPPPSRPLPADPRVA 195
>LEM2_CAEEL (Q9XTB5) LEM protein 2 (Ce-MAN1) (MAN1 homolog)| Length = 500 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 397 STPRALADLTDAYSTHAPSRTGATPRRTQI 308 S P + D T ++ST R GATP R I Sbjct: 197 SVPGLITDFTPSFSTFGSDRPGATPPRKSI 226
>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2| Length = 1009 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = -2 Query: 478 GPNSLPSGPRPR-PGAHAAWPRCHAPSRSTPR 386 GP P GPRP P A A P +RS PR Sbjct: 309 GPGGPPRGPRPGVPAAAPATPEIQRATRSAPR 340
>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region| Length = 238 Score = 28.9 bits (63), Expect = 7.8 Identities = 23/67 (34%), Positives = 27/67 (40%) Frame = -2 Query: 487 RRPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRRTQI 308 R P P S + P PRP + C SR R L D H P+ G T R Sbjct: 32 RPPPPGS--ASPSPRPRRASCATGCCGRSRPYARRLRRPADG---HGPAGGGRTGRWYAY 86 Query: 307 QLEACLA 287 L AC+A Sbjct: 87 ALAACVA 93
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAP-----SRSTPRALADLTDAYSTHAPSRT 335 RR P P S PSG +P + + +P R TP A D +S ++P T Sbjct: 238 RRSPSPGSSPSGRSGKPESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPEET 294
>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = -2 Query: 490 RRRPGPNSLPSGPRPRPGAHAAWPRCHAP-----SRSTPRALADLTDAYSTHAPSRT 335 RR P P S PSG +P + + +P R TP A D +S ++P T Sbjct: 243 RRSPSPGSSPSGRSVKPESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYSPEET 299
>JUN_PIG (P56432) Transcription factor AP-1 (Activator protein 1) (AP1)| (Proto-oncogene c-jun) (V-jun avian sarcoma virus 17 oncogene homolog) Length = 331 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -1 Query: 398 LHSTCPRRSHRCLFHPRALADGRDAPPHADPARSVPGPPLHSLAAPPR 255 LHS P ++ F+P AL+ G AP + + P P PP+ Sbjct: 163 LHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQQPPQ 210
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = -2 Query: 463 PSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332 P+ P PRPGA AA P T A T A AP+ G Sbjct: 189 PAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRG 232
>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)| Length = 939 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 466 LPSGPRPRP--GAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTGATPRRTQIQLEAC 293 +PS P P+P A A+ P +P ++ ++ L ++ P+RT +P R+ I A Sbjct: 471 IPSRPAPKPPSSASASAPIIKSPVMNSAANVSPLKQTHAPTTPNRT--SPNRSSISRNAT 528 Query: 292 LAR 284 L + Sbjct: 529 LKK 531
>NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 323 PPHADPARSVPGPPLHSLAAPPRA 252 P H P R+ P PPL + PPRA Sbjct: 48 PTHQRPPRTRPPPPLPRFSRPPRA 71
>SELO_HUMAN (Q9BVL4) Selenoprotein O| Length = 669 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 481 PGPNSLPSGPRPRPGA 434 PGP PS PRP PGA Sbjct: 65 PGPEGAPSAPRPVPGA 80
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%) Frame = -1 Query: 407 PIPLHSTCPRRSHRCLFHPRALAD--GRDAPPHADPARSVPGPPL-------HSLAAPP 258 P P T PRR+ R P ++ G PP A P+ S P P + + AAPP Sbjct: 778 PPPGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPP 836
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 26.2 bits (56), Expect(2) = 8.0 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = -1 Query: 341 ADGRDAPPHADPARSVPGPP 282 A G D PP AD PGPP Sbjct: 247 APGPDGPPGADGQSGPPGPP 266 Score = 21.2 bits (43), Expect(2) = 8.0 Identities = 13/51 (25%), Positives = 20/51 (39%) Frame = -2 Query: 484 RPGPNSLPSGPRPRPGAHAAWPRCHAPSRSTPRALADLTDAYSTHAPSRTG 332 RPG ++ P P PR G AP + +++ + AP G Sbjct: 170 RPGTDAAPGSPGPR-GPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPG 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,551,346 Number of Sequences: 219361 Number of extensions: 1053919 Number of successful extensions: 6156 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 5020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6108 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
