ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart34c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190434.1| Oryza sativa (japonica cultivar-group), predic... 119 1e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
3dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5dbj|AK101730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
6dbj|AK058753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
7ref|XM_482554.1| Oryza sativa (japonica cultivar-group), mRNA 94 6e-16
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
9dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
10dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
11dbj|AK058477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
12gb|AY103708.1| Zea mays PCO143139 mRNA sequence 68 3e-08
13gb|AF068686.3| Glycine max geranylgeranyl hydrogenase (Ggh) and ... 50 0.008
14dbj|AB225048.1| Aspergillus oryzae cDNA, contig sequence: AoEST1899 44 0.49
15emb|AJ937769.1| Uncultured epsilon proteobacterium fosmid clone ... 44 0.49
16ref|NM_116273.3| Arabidopsis thaliana beta-amylase AT4G00490 mRN... 42 2.0
17gb|AF461198.1| Medicago sativa nodule-enhanced malate dehydrogen... 42 2.0
18emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 42 2.0
19gb|AF020273.1|AF020273 Medicago sativa nodule-enhanced malate de... 42 2.0
20gb|AC090872.1|AC090872 Drosophila melanogaster, chromosome 2L, r... 42 2.0
21gb|AC009201.4|AC009201 Drosophila melanogaster, chromosome 2L, r... 42 2.0
22emb|BX841543.1|CNS09YFT Arabidopsis thaliana Full-length cDNA Co... 42 2.0
23gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 42 2.0
24gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62... 42 2.0
25gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, com... 40 7.7
26gb|AC122117.10| Mus musculus chromosome 18, clone RP23-61O22, co... 40 7.7
27emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.7
28ref|XM_814670.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.7
29gb|BT023839.1| Drosophila melanogaster IP14658 full insert cDNA 40 7.7
30gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete se... 40 7.7
31gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, comp... 40 7.7
32gb|AC095558.10| Rattus norvegicus 18 BAC CH230-8D7 (Children's H... 40 7.7
33emb|AL109911.47|HS1107C24 Human DNA sequence from clone RP5-1107... 40 7.7
34gb|AC157904.3| Mus musculus chromosome 18, clone RP23-379G12, co... 40 7.7
35emb|BX001008.3| Mouse DNA sequence from clone RP24-143D17 on chr... 40 7.7
36emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chr... 40 7.7
37gb|AC096692.5| Drosophila melanogaster 3L BAC RP98-48O3 (Roswell... 40 7.7
38gb|AY118639.1| Drosophila melanogaster SD02424 full insert cDNA 40 7.7
39dbj|AK128457.1| Homo sapiens cDNA FLJ46600 fis, clone THYMU3047144 40 7.7
40ref|NM_140174.4| Drosophila melanogaster CG7839-RA (CG7839), mRNA 40 7.7
41gb|AC087645.19| Homo sapiens chromosome 17, clone RP11-219G17, c... 40 7.7
42gb|DQ269456.1| Stevia rebaudiana malate dehydrogenase mRNA, part... 40 7.7
43gb|AF217397.1|AF217397 Drosophila melanogaster clone 2H6 unknown... 40 7.7
44gb|AC006562.8|AC006562 Drosophila melanogaster, chromosome 3L, r... 40 7.7
45gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39... 40 7.7
46emb|BX255966.4| Mouse DNA sequence from clone RP23-296F5 on chro... 40 7.7
47gb|AC131121.4| Mus musculus BAC clone RP24-550I15 from 1, comple... 40 7.7
48gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complet... 40 7.7
49gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complet... 40 7.7
50emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chr... 40 7.7 
>ref|NM_190434.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1215

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                       
Query: 475 cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
           |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 238 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 297

                                           
Query: 535 ggtctgttaatcaagatgtctcctctggtctc 566
           ||  ||||||| ||||||||||||||||||||
Sbjct: 298 ggcttgttaattaagatgtctcctctggtctc 329
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                            
Query: 475      cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
                |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 35493788 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 35493847

                                                
Query: 535      ggtctgttaatcaagatgtctcctctggtctc 566
                ||  ||||||| ||||||||||||||||||||
Sbjct: 35493848 ggcttgttaattaagatgtctcctctggtctc 35493879
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>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446G04
          Length = 143515

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                         
Query: 475   cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
             |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 23975 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 24034

                                             
Query: 535   ggtctgttaatcaagatgtctcctctggtctc 566
             ||  ||||||| ||||||||||||||||||||
Sbjct: 24035 ggcttgttaattaagatgtctcctctggtctc 24066
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1088C09
          Length = 154084

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                          
Query: 475    cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
              |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 117737 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 117796

                                              
Query: 535    ggtctgttaatcaagatgtctcctctggtctc 566
              ||  ||||||| ||||||||||||||||||||
Sbjct: 117797 ggcttgttaattaagatgtctcctctggtctc 117828
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>dbj|AK101730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061G08, full
           insert sequence
          Length = 1742

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                       
Query: 475 cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
           |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 527 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 586

                                           
Query: 535 ggtctgttaatcaagatgtctcctctggtctc 566
           ||  ||||||| ||||||||||||||||||||
Sbjct: 587 ggcttgttaattaagatgtctcctctggtctc 618
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>dbj|AK058753.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H12, full
           insert sequence
          Length = 1623

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                       
Query: 475 cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
           |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 407 cctgaggcatcttacaaagtggcagttctcggtgctgctggtggcattggtcaaccgttg 466

                                           
Query: 535 ggtctgttaatcaagatgtctcctctggtctc 566
           ||  ||||||| ||||||||||||||||||||
Sbjct: 467 ggcttgttaattaagatgtctcctctggtctc 498
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>ref|XM_482554.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1194

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                       
Query: 475 cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
           |||||||| || |||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 214 cctgaggcttcgtacaaagtggcagtgctcggtgctgctggtggtattggccaaccattg 273

                                              
Query: 535 ggtctgttaatcaagatgtctcctctggtctcaga 569
           || || || || |||||||||||||||||||||||
Sbjct: 274 ggccttttgattaagatgtctcctctggtctcaga 308



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 307 tcaaggccaaggagtcatggcatcacaagctacggcggcttgaaggca 354
           |||| |||||||| ||||||| ||||||||||| | ||| ||||||||
Sbjct: 52  tcaaagccaaggaatcatggcttcacaagctacagtggcctgaaggca 99
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                            
Query: 475      cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
                |||||||| || |||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 21048676 cctgaggcttcgtacaaagtggcagtgctcggtgctgctggtggtattggccaaccattg 21048617

                                                   
Query: 535      ggtctgttaatcaagatgtctcctctggtctcaga 569
                || || || || |||||||||||||||||||||||
Sbjct: 21048616 ggccttttgattaagatgtctcctctggtctcaga 21048582



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 307      tcaaggccaaggagtcatggcatcacaagctacggcggcttgaaggca 354
                |||| |||||||| ||||||| ||||||||||| | ||| ||||||||
Sbjct: 21048838 tcaaagccaaggaatcatggcttcacaagctacagtggcctgaaggca 21048791
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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0431A03
          Length = 149500

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                          
Query: 475    cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
              |||||||| || |||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 114851 cctgaggcttcgtacaaagtggcagtgctcggtgctgctggtggtattggccaaccattg 114792

                                                 
Query: 535    ggtctgttaatcaagatgtctcctctggtctcaga 569
              || || || || |||||||||||||||||||||||
Sbjct: 114791 ggccttttgattaagatgtctcctctggtctcaga 114757



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 307    tcaaggccaaggagtcatggcatcacaagctacggcggcttgaaggca 354
              |||| |||||||| ||||||| ||||||||||| | ||| ||||||||
Sbjct: 115013 tcaaagccaaggaatcatggcttcacaagctacagtggcctgaaggca 114966
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0413H11
          Length = 147655

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                         
Query: 475   cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
             |||||||| || |||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 19886 cctgaggcttcgtacaaagtggcagtgctcggtgctgctggtggtattggccaaccattg 19827

                                                
Query: 535   ggtctgttaatcaagatgtctcctctggtctcaga 569
             || || || || |||||||||||||||||||||||
Sbjct: 19826 ggccttttgattaagatgtctcctctggtctcaga 19792



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 307   tcaaggccaaggagtcatggcatcacaagctacggcggcttgaaggca 354
             |||| |||||||| ||||||| ||||||||||| | ||| ||||||||
Sbjct: 20048 tcaaagccaaggaatcatggcttcacaagctacagtggcctgaaggca 20001
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>dbj|AK058477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C06, full
           insert sequence
          Length = 1349

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                       
Query: 475 cctgaggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattg 534
           |||||||| || |||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 92  cctgaggcttcgtacaaagtggcagtgctcggtgctgctggtggtattggccaaccattg 151

                                              
Query: 535 ggtctgttaatcaagatgtctcctctggtctcaga 569
           || || || || |||||||||||||||||||||||
Sbjct: 152 ggccttttgattaagatgtctcctctggtctcaga 186
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>gb|AY103708.1| Zea mays PCO143139 mRNA sequence
          Length = 1169

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 482 catcttacaaagtggcagtacttggtgctgctggaggcatcggtcaaccattgggtctgt 541
           |||||||||| |||||  | || ||||||||||| |||||||||||||| ||||| || |
Sbjct: 443 catcttacaaggtggcgctgctcggtgctgctggtggcatcggtcaacccttgggcctat 502

                                 
Query: 542 taatcaagatgtctcctctggt 563
           | || ||||||||||| |||||
Sbjct: 503 tgattaagatgtctcccctggt 524
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>gb|AF068686.3| Glycine max geranylgeranyl hydrogenase (Ggh) and nodule-enhanced
            malate dehydrogenase (Mdh) genes, complete cds
          Length = 5528

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 487  tacaaagtggcagtacttggtgctgctggaggcatcggtca 527
            |||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 3750 tacaaagttgcagttcttggtgctgctggagggataggtca 3790
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>dbj|AB225048.1| Aspergillus oryzae cDNA, contig sequence: AoEST1899
          Length = 1010

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 505 ggtgctgctggaggcatcggtc 526
           ||||||||||||||||||||||
Sbjct: 99  ggtgctgctggaggcatcggtc 120
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>emb|AJ937769.1| Uncultured epsilon proteobacterium fosmid clone b1dcf1.3.c08
          Length = 38167

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    caagaaacggagcaaaggttga 42
             ||||||||||||||||||||||
Sbjct: 11043 caagaaacggagcaaaggttga 11064
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>ref|NM_116273.3| Arabidopsis thaliana beta-amylase AT4G00490 mRNA, complete cds
          Length = 2331

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 354 atcgtcgtcgtcatcaattgg 374
           |||||||||||||||||||||
Sbjct: 287 atcgtcgtcgtcatcaattgg 267
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>gb|AF461198.1| Medicago sativa nodule-enhanced malate dehydrogenase gene, exons 1
            and 2 and partial cds
          Length = 3437

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                             
Query: 479  aggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtca 527
            ||||||| |||||||| || || ||||||||||| ||||| || |||||
Sbjct: 3298 aggcatcctacaaagtagcggttcttggtgctgcaggagggattggtca 3346
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>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   atcgtcgtcgtcatcaattgg 374
             |||||||||||||||||||||
Sbjct: 29321 atcgtcgtcgtcatcaattgg 29301
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>gb|AF020273.1|AF020273 Medicago sativa nodule-enhanced malate dehydrogenase precursor
           (nemdh) mRNA, complete cds
          Length = 1645

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 479 aggcatcttacaaagtggcagtacttggtgctgctggaggcatcggtca 527
           ||||||| |||||||| || || ||||||||||| ||||| || |||||
Sbjct: 295 aggcatcctacaaagtagcggttcttggtgctgcaggagggattggtca 343
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>gb|AC090872.1|AC090872 Drosophila melanogaster, chromosome 2L, region 36B-36C, BAC clone
             BACR06G19, complete sequence
          Length = 178481

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 445   ccaaaggcaaagtccacagctcaga 469
             |||||||||||| ||||||||||||
Sbjct: 37355 ccaaaggcaaagcccacagctcaga 37331
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>gb|AC009201.4|AC009201 Drosophila melanogaster, chromosome 2L, region 36C-36C, BAC clone
            BACR19H02, complete sequence
          Length = 158475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 445  ccaaaggcaaagtccacagctcaga 469
            |||||||||||| ||||||||||||
Sbjct: 7092 ccaaaggcaaagcccacagctcaga 7068
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>emb|BX841543.1|CNS09YFT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZG08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1012

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 354 atcgtcgtcgtcatcaattgg 374
           |||||||||||||||||||||
Sbjct: 252 atcgtcgtcgtcatcaattgg 232
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>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   atcgtcgtcgtcatcaattgg 374
             |||||||||||||||||||||
Sbjct: 10447 atcgtcgtcgtcatcaattgg 10427
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>gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62 of 83 of the complete
             sequence
          Length = 247634

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 445   ccaaaggcaaagtccacagctcaga 469
             |||||||||||| ||||||||||||
Sbjct: 97485 ccaaaggcaaagcccacagctcaga 97461
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>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence
          Length = 208274

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    catgacttcagccagtgctcaggc 296
              ||||||||||||||||||| ||||
Sbjct: 208173 catgacttcagccagtgctgaggc 208196
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>gb|AC122117.10| Mus musculus chromosome 18, clone RP23-61O22, complete sequence
          Length = 207024

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    ttaatcaagatgtctcctct 560
              ||||||||||||||||||||
Sbjct: 172079 ttaatcaagatgtctcctct 172060
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 505     ggtgctgctggaggcatcgg 524
               ||||||||||||||||||||
Sbjct: 2122855 ggtgctgctggaggcatcgg 2122874
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>ref|XM_814670.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506825.230) partial mRNA
          Length = 3453

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 348 gaaggcatcgtcgtcgtcat 367
           ||||||||||||||||||||
Sbjct: 939 gaaggcatcgtcgtcgtcat 920
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>gb|BT023839.1| Drosophila melanogaster IP14658 full insert cDNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 353  catcgtcgtcgtcatcaattggct 376
            |||||||||||||||||| |||||
Sbjct: 3158 catcgtcgtcgtcatcaagtggct 3135
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>gb|AC157349.7| Medicago truncatula clone mth2-139l1, complete sequence
          Length = 116909

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   cctgaggcatcttacaaagt 494
             ||||||||||||||||||||
Sbjct: 89628 cctgaggcatcttacaaagt 89647
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>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   catgacttcagccagtgctcaggc 296
             ||||||||||||||||||| ||||
Sbjct: 50472 catgacttcagccagtgctgaggc 50495
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>gb|AC095558.10| Rattus norvegicus 18 BAC CH230-8D7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 226956

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 541    ttaatcaagatgtctcctct 560
              ||||||||||||||||||||
Sbjct: 173522 ttaatcaagatgtctcctct 173541
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>emb|AL109911.47|HS1107C24 Human DNA sequence from clone RP5-1107C24 on chromosome 20 Contains the
             3' end of the TAF4 gene for TAF4 RNA polymerase II (TATA
             box binding protein (TBP)-associated factor, 135 kDa), the
             3' end of the CDH4 gene for retinal cadherin 4 type 1
             (R-cadherin) and six CpG islands, complete sequence
          Length = 121982

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     agccacctgcccccaaccaagaaa 27
             ||||||||||||||||||| ||||
Sbjct: 80432 agccacctgcccccaaccatgaaa 80455
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>gb|AC157904.3| Mus musculus chromosome 18, clone RP23-379G12, complete sequence
          Length = 182922

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 541  ttaatcaagatgtctcctct 560
            ||||||||||||||||||||
Sbjct: 7557 ttaatcaagatgtctcctct 7538
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>emb|BX001008.3| Mouse DNA sequence from clone RP24-143D17 on chromosome 11 Contains
             part of the 3'UTR of the U2af1-rs1 gene for U2 small
             nuclear ribonucleoprotein auxiliary factor (U2AF) 1
             (related sequence 1), the 5' end of the Murr1 gene for
             U2af1-rs1 region 1, the Cct4 gene for chaperonin subunit 4
             (delta), the 5' end of gene FLJ13305 and three CpG
             islands, complete sequence
          Length = 46341

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   catgacttcagccagtgctcaggc 296
             ||||||||||||||||||| ||||
Sbjct: 10803 catgacttcagccagtgctgaggc 10826
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>emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chromosome 11 Contains two
              novel genes, the AI503894 gene for expressed sequence
              AI503894, a laminin receptor 1 (ribosomal protein
              SA)(Lamr1) pseudogene and a CpG island, complete sequence
          Length = 201664

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    catgacttcagccagtgctcaggc 296
              ||||||||||||||||||| ||||
Sbjct: 181638 catgacttcagccagtgctgaggc 181661
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>gb|AC096692.5| Drosophila melanogaster 3L BAC RP98-48O3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 173782

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 353   catcgtcgtcgtcatcaattggct 376
             |||||||||||||||||| |||||
Sbjct: 62999 catcgtcgtcgtcatcaagtggct 63022
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>gb|AY118639.1| Drosophila melanogaster SD02424 full insert cDNA
          Length = 3728

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 353  catcgtcgtcgtcatcaattggct 376
            |||||||||||||||||| |||||
Sbjct: 3172 catcgtcgtcgtcatcaagtggct 3149
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>dbj|AK128457.1| Homo sapiens cDNA FLJ46600 fis, clone THYMU3047144
          Length = 2934

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 catcctaggcccccggggca 165
           ||||||||||||||||||||
Sbjct: 176 catcctaggcccccggggca 195
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>ref|NM_140174.4| Drosophila melanogaster CG7839-RA (CG7839), mRNA
          Length = 3712

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 353  catcgtcgtcgtcatcaattggct 376
            |||||||||||||||||| |||||
Sbjct: 3175 catcgtcgtcgtcatcaagtggct 3152
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>gb|AC087645.19| Homo sapiens chromosome 17, clone RP11-219G17, complete sequence
          Length = 209751

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   catcctaggcccccggggca 165
             ||||||||||||||||||||
Sbjct: 70284 catcctaggcccccggggca 70303
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>gb|DQ269456.1| Stevia rebaudiana malate dehydrogenase mRNA, partial cds
          Length = 605

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 505 ggtgctgctggaggcatcggtcaaccattgggtctgttaatcaagatg 552
           |||||||||||||| || |||||||| || | | ||||||| ||||||
Sbjct: 175 ggtgctgctggaggaattggtcaaccgttagctatgttaatgaagatg 222
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>gb|AF217397.1|AF217397 Drosophila melanogaster clone 2H6 unknown mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 353 catcgtcgtcgtcatcaattggct 376
           |||||||||||||||||| |||||
Sbjct: 412 catcgtcgtcgtcatcaagtggct 389
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>gb|AC006562.8|AC006562 Drosophila melanogaster, chromosome 3L, region 68A1-68B2, BAC clone
              BACR48O03, complete sequence
          Length = 173781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 353    catcgtcgtcgtcatcaattggct 376
              |||||||||||||||||| |||||
Sbjct: 110783 catcgtcgtcgtcatcaagtggct 110760
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>gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39 of 83 of the complete
              sequence
          Length = 281589

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 353    catcgtcgtcgtcatcaattggct 376
              |||||||||||||||||| |||||
Sbjct: 189988 catcgtcgtcgtcatcaagtggct 189965
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>emb|BX255966.4| Mouse DNA sequence from clone RP23-296F5 on chromosome 4, complete
            sequence
          Length = 19577

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  catgacttcagccagtgctcaggc 296
            ||||||||||||||||||| ||||
Sbjct: 3462 catgacttcagccagtgctgaggc 3439
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>gb|AC131121.4| Mus musculus BAC clone RP24-550I15 from 1, complete sequence
          Length = 127312

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ctcttcattccttggcaaga 406
             ||||||||||||||||||||
Sbjct: 61957 ctcttcattccttggcaaga 61938
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>gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complete sequence
          Length = 206831

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 273   catgacttcagccagtgctcaggc 296
             ||||||||||||||||||| ||||
Sbjct: 43925 catgacttcagccagtgctgaggc 43902
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>gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complete sequence
          Length = 183859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   catgacttcagccagtgctcaggc 296
             ||||||||||||||||||| ||||
Sbjct: 33914 catgacttcagccagtgctgaggc 33937
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>emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chromosome 2, complete
              sequence
          Length = 179373

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 273    catgacttcagccagtgctcaggc 296
              ||||||||||||||||||| ||||
Sbjct: 134656 catgacttcagccagtgctgaggc 134633


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,820,267
Number of Sequences: 3902068
Number of extensions: 3820267
Number of successful extensions: 68653
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68450
Number of HSP's gapped (non-prelim): 203
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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