ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart34c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 333 bits (168), Expect = 4e-88 Identities = 282/320 (88%) Strand = Plus / Plus Query: 243 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 302 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 154 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 213 Query: 303 ctcgacaggacctgcgggagtgggttcaagtcgaagcatgcgtacaggaacggctacttc 362 ||||||| ||||||||||| ||||||||||| | | | |||||||||| ||||||||| Sbjct: 214 ctcgacaaaacctgcgggagcgggttcaagtcaaggaagtcgtacaggaatggctacttc 273 Query: 363 gccacccgcatcaagctccccgccggctacaccgccggcaccaacaccgctttctacctg 422 ||| | ||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 274 gccgctcgcgttaagctccccgccggctacaccgccggcaccaacaccgccttctacctg 333 Query: 423 tccaacaacgaggcgcaccctgggttccacgacgaggtggacatggagttcctgggcacc 482 || ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| Sbjct: 334 tcgaacaacgaggcgcacccggggttccacgacgagatcgacatggagttcctgggcacc 393 Query: 483 atccccggcgagccctacacgctgcagacgaacgtgtacgtccggggcagcggcgacggg 542 |||||||||||||||||||| || ||||| ||||| |||||||| ||| ||||||||| Sbjct: 394 atccccggcgagccctacaccctccagaccaacgtctacgtccgcggctccggcgacggc 453 Query: 543 cggatcatcgggcgggagat 562 || ||| |||| || ||||| Sbjct: 454 cgcatcgtcggccgcgagat 473 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 173 cgcgcagccttctcccggctactacccgagctcg 206 |||||||||||| || || ||||||||||||||| Sbjct: 84 cgcgcagccttcgccggggtactacccgagctcg 117
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 157 bits (79), Expect = 5e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 420 ctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacatggagttcctgggc 479 ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| Sbjct: 17438246 ctgtcgaacaacgaggcgcacccggggttccacgacgagatcgacatggagttcctgggc 17438305 Query: 480 accatccccggcgagccctacacgctgcagacgaacgtgtacgtccggggcagcggcgac 539 ||||||||||||||||||||||| || ||||| ||||| |||||||| ||| ||||||| Sbjct: 17438306 accatccccggcgagccctacaccctccagaccaacgtctacgtccgcggctccggcgac 17438365 Query: 540 gggcggatcatcgggcgggagat 562 || || ||| |||| || ||||| Sbjct: 17438366 ggccgcatcgtcggccgcgagat 17438388 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 318 gggagtgggttcaagtcgaagcatgcgtacaggaacggctacttcgccacccgcatcaag 377 ||||| ||||||||||| | | | |||||||||| |||||||||||| | ||| | ||| Sbjct: 17438048 gggagcgggttcaagtcaaggaagtcgtacaggaatggctacttcgccgctcgcgttaag 17438107 Query: 378 ctccccgccggctacaccgccggcaccaacaccgctttctac 419 ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 17438108 ctccccgccggctacaccgccggcaccaacaccgccttctac 17438149 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 243 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 302 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 17437461 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 17437520 Query: 303 ctcgacaggacctgcgg 319 ||||||| |||||||| Sbjct: 17437521 ctcgacaaaacctgcgg 17437537 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 173 cgcgcagccttctcccggctactacccgagctcg 206 |||||||||||| || || ||||||||||||||| Sbjct: 17437391 cgcgcagccttcgccggggtactacccgagctcg 17437424
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 157 bits (79), Expect = 5e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 420 ctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacatggagttcctgggc 479 ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| Sbjct: 106470 ctgtcgaacaacgaggcgcacccggggttccacgacgagatcgacatggagttcctgggc 106529 Query: 480 accatccccggcgagccctacacgctgcagacgaacgtgtacgtccggggcagcggcgac 539 ||||||||||||||||||||||| || ||||| ||||| |||||||| ||| ||||||| Sbjct: 106530 accatccccggcgagccctacaccctccagaccaacgtctacgtccgcggctccggcgac 106589 Query: 540 gggcggatcatcgggcgggagat 562 || || ||| |||| || ||||| Sbjct: 106590 ggccgcatcgtcggccgcgagat 106612 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 318 gggagtgggttcaagtcgaagcatgcgtacaggaacggctacttcgccacccgcatcaag 377 ||||| ||||||||||| | | | |||||||||| |||||||||||| | ||| | ||| Sbjct: 106272 gggagcgggttcaagtcaaggaagtcgtacaggaatggctacttcgccgctcgcgttaag 106331 Query: 378 ctccccgccggctacaccgccggcaccaacaccgctttctac 419 ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 106332 ctccccgccggctacaccgccggcaccaacaccgccttctac 106373 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 243 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 302 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 105685 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 105744 Query: 303 ctcgacaggacctgcgg 319 ||||||| |||||||| Sbjct: 105745 ctcgacaaaacctgcgg 105761 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 173 cgcgcagccttctcccggctactacccgagctcg 206 |||||||||||| || || ||||||||||||||| Sbjct: 105615 cgcgcagccttcgccggggtactacccgagctcg 105648
>ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA Length = 984 Score = 133 bits (67), Expect = 7e-28 Identities = 100/111 (90%) Strand = Plus / Plus Query: 407 caccgctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacat 466 |||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||| Sbjct: 336 caccgccttctacctgtccaacggcgaggcgcacccggggtggcacgacgaggtggacat 395 Query: 467 ggagttcctgggcaccatccccggcgagccctacacgctgcagacgaacgt 517 ||||||||| ||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 396 ggagttcctcggcaccacccccgggaagccctacacgctgcagaccaacgt 446
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 133 bits (67), Expect = 7e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 407 caccgctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacat 466 |||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||| Sbjct: 35396915 caccgccttctacctgtccaacggcgaggcgcacccggggtggcacgacgaggtggacat 35396856 Query: 467 ggagttcctgggcaccatccccggcgagccctacacgctgcagacgaacgt 517 ||||||||| ||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 35396855 ggagttcctcggcaccacccccgggaagccctacacgctgcagaccaacgt 35396805 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggc 401 ||||||||||||| ||| ||||||||||||| Sbjct: 1444587 catcaagctcccctccgactacaccgccggc 1444617 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatcc 486 ||||||||| ||||| | ||||||||||||| ||||| Sbjct: 1445479 cacgacgagctggacttcgagttcctgggcaacatcc 1445515
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 133 bits (67), Expect = 7e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 407 caccgctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacat 466 |||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||| Sbjct: 8436 caccgccttctacctgtccaacggcgaggcgcacccggggtggcacgacgaggtggacat 8377 Query: 467 ggagttcctgggcaccatccccggcgagccctacacgctgcagacgaacgt 517 ||||||||| ||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 8376 ggagttcctcggcaccacccccgggaagccctacacgctgcagaccaacgt 8326
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 133 bits (67), Expect = 7e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 407 caccgctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacat 466 |||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||| Sbjct: 57463 caccgccttctacctgtccaacggcgaggcgcacccggggtggcacgacgaggtggacat 57404 Query: 467 ggagttcctgggcaccatccccggcgagccctacacgctgcagacgaacgt 517 ||||||||| ||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 57403 ggagttcctcggcaccacccccgggaagccctacacgctgcagaccaacgt 57353
>ref|NM_187656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 103 bits (52), Expect = 6e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 133 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 192 Query: 411 gctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacatggag 470 || ||||||||||| ||||||||| | |||| ||| ||||||||| | ||||| ||| Sbjct: 193 gccttctacctgtcgaacaacgagctgtacccggggcagcacgacgagatcgacatagag 252 Query: 471 ttcctgggcaccatccccggcgagccctacacgctgcagacgaacgtgtacgtccggggc 530 | ||||| || | || || ||||| | ||||||||||||||||||||||| | ||| Sbjct: 253 ctgctggggacggtgccgggggagccgtggacgctgcagacgaacgtgtacgtgcacggc 312 Query: 531 agcggcgacgggcggatcatcgggcgggagat 562 | ||||||||| ||||||||| ||||||| Sbjct: 313 accggcgacggcgccatcatcgggagggagat 344
>dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G01, full insert sequence Length = 1186 Score = 103 bits (52), Expect = 6e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 358 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 417 Query: 411 gctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacatggag 470 || ||||||||||| ||||||||| | |||| ||| ||||||||| | ||||| ||| Sbjct: 418 gccttctacctgtcgaacaacgagctgtacccggggcagcacgacgagatcgacatagag 477 Query: 471 ttcctgggcaccatccccggcgagccctacacgctgcagacgaacgtgtacgtccggggc 530 | ||||| || | || || ||||| | ||||||||||||||||||||||| | ||| Sbjct: 478 ctgctggggacggtgccgggggagccgtggacgctgcagacgaacgtgtacgtgcacggc 537 Query: 531 agcggcgacgggcggatcatcgggcgggagat 562 | ||||||||| ||||||||| ||||||| Sbjct: 538 accggcgacggcgccatcatcgggagggagat 569
>dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G12, full insert sequence Length = 1193 Score = 103 bits (52), Expect = 6e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 365 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 424 Query: 411 gctttctacctgtccaacaacgaggcgcaccctgggttccacgacgaggtggacatggag 470 || ||||||||||| ||||||||| | |||| ||| ||||||||| | ||||| ||| Sbjct: 425 gccttctacctgtcgaacaacgagctgtacccggggcagcacgacgagatcgacatagag 484 Query: 471 ttcctgggcaccatccccggcgagccctacacgctgcagacgaacgtgtacgtccggggc 530 | ||||| || | || || ||||| | ||||||||||||||||||||||| | ||| Sbjct: 485 ctgctggggacggtgccgggggagccgtggacgctgcagacgaacgtgtacgtgcacggc 544 Query: 531 agcggcgacgggcggatcatcgggcgggagat 562 | ||||||||| ||||||||| ||||||| Sbjct: 545 accggcgacggcgccatcatcgggagggagat 576
>ref|NM_197613.1| Oryza sativa (japonica cultivar-group) putative cellulase (OSJNBa0001O14.5), mRNA Length = 969 Score = 77.8 bits (39), Expect = 4e-11 Identities = 126/155 (81%) Strand = Plus / Plus Query: 387 ggctacaccgccggcaccaacaccgctttctacctgtccaacaacgaggcgcaccctggg 446 ||||||||||||||| |||||| || ||||||||||| |||| ||| | |||| ||| Sbjct: 355 ggctacaccgccggcgtcaacacggccttctacctgtcgaacacggagcagtacccgggg 414 Query: 447 ttccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctg 506 |||||||||| | ||||||||| | ||||| || | || || ||||| ||||||||| Sbjct: 415 caccacgacgagatcgacatggagctgctggggacggtgccgggggagccgtacacgctg 474 Query: 507 cagacgaacgtgtacgtccggggcagcggcgacgg 541 ||||||||||| ||||| || ||| ||||||||| Sbjct: 475 cagacgaacgtctacgtgcgcggctccggcgacgg 509
>gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence Length = 977 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| ||||||||||||||| | | | |||||||||||||||||||| Sbjct: 798 cacgacgagatcgacctggagttcctgggcaacgtgtcgggcgagccctacacgctgcac 739 Query: 510 acgaacgtgt 519 |||||||||| Sbjct: 738 acgaacgtgt 729
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEB) Length = 1226 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| | ||||||||||||| | || |||||||||||||||||||||| Sbjct: 392 cacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctacacgctgcac 451 Query: 510 acgaacgtgt 519 || ||||||| Sbjct: 452 accaacgtgt 461
>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA, complete cds Length = 1056 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| | ||||||||||||| | || |||||||||||||||||||||| Sbjct: 286 cacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctacacgctgcac 345 Query: 510 acgaacgtgt 519 || ||||||| Sbjct: 346 accaacgtgt 355
>gb|AY106776.1| Zea mays PCO076978 mRNA sequence Length = 974 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| ||||||||||||||| | | | |||||||||||||||||||| Sbjct: 406 cacgacgagatcgacctggagttcctgggcaacgtgtcgggcgagccctacacgctgcac 465 Query: 510 acgaacgtgt 519 |||||||||| Sbjct: 466 acgaacgtgt 475
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 472083 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 472024 Query: 411 gctttctac 419 || |||||| Sbjct: 472023 gccttctac 472015 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 501 acgctgcagacgaacgtgtacgtccggggcagcggcgacgggcggatcatcgggcgggag 560 ||||||||||||||||||||||| | |||| ||||||||| ||||||||| ||||| Sbjct: 471840 acgctgcagacgaacgtgtacgtgcacggcaccggcgacggcgccatcatcgggagggag 471781 Query: 561 at 562 || Sbjct: 471780 at 471779
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 472081 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 472022 Query: 411 gctttctac 419 || |||||| Sbjct: 472021 gccttctac 472013 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 501 acgctgcagacgaacgtgtacgtccggggcagcggcgacgggcggatcatcgggcgggag 560 ||||||||||||||||||||||| | |||| ||||||||| ||||||||| ||||| Sbjct: 471838 acgctgcagacgaacgtgtacgtgcacggcaccggcgacggcgccatcatcgggagggag 471779 Query: 561 at 562 || Sbjct: 471778 at 471777
>dbj|AK119538.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C03, full insert sequence Length = 1281 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 360 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 419 Query: 411 gctttctac 419 || |||||| Sbjct: 420 gccttctac 428 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 501 acgctgcagacgaacgtgtacgtccggggcagcggcgacgggcggatcatcgggcgggag 560 ||||||||||||||||||||||| | |||| ||||||||| ||||||||| ||||| Sbjct: 603 acgctgcagacgaacgtgtacgtgcacggcaccggcgacggcgccatcatcgggagggag 662 Query: 561 at 562 || Sbjct: 663 at 664
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 351 aacggctacttcgccacccgcatcaagctccccgccggctacaccgccggcaccaacacc 410 ||||||||||||| | || ||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 70543 aacggctacttcggcgcctccatcaaggtcccctccggctacaccgccggcgtcaacacc 70484 Query: 411 gctttctac 419 || |||||| Sbjct: 70483 gccttctac 70475 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 501 acgctgcagacgaacgtgtacgtccggggcagcggcgacgggcggatcatcgggcgggag 560 ||||||||||||||||||||||| | |||| ||||||||| ||||||||| ||||| Sbjct: 70300 acgctgcagacgaacgtgtacgtgcacggcaccggcgacggcgccatcatcgggagggag 70241 Query: 561 at 562 || Sbjct: 70240 at 70239
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||||||||| |||||||||| || | | || |||||||||||||||| ||||| Sbjct: 345 ccacgacgaggtggacctggagttcctcgggaacgtcaccggcgagccctacaccctgca 404
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||||||||| |||||||||| || | | || |||||||||||||||| ||||| Sbjct: 8379001 ccacgacgaggtggacctggagttcctcgggaacgtcaccggcgagccctacaccctgca 8378942
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||||||||| |||||||||| || | | || |||||||||||||||| ||||| Sbjct: 119110 ccacgacgaggtggacctggagttcctcgggaacgtcaccggcgagccctacaccctgca 119051
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| | ||||||||||| | | || |||||||||||||||||||||| Sbjct: 331 cacgacgagatcgacttcgagttcctgggaaacgtcaccggcgagccctacacgctgcac 390 Query: 510 acgaacgtgt 519 || ||||||| Sbjct: 391 accaacgtgt 400
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence Length = 1495 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| | ||||||||||||| | | |||||||||||||||||||||| Sbjct: 435 cacgacgagatcgacttcgagttcctgggcaacgtgtccggcgagccctacacgctgcac 494 Query: 510 acgaacgtgt 519 || ||||||| Sbjct: 495 accaacgtgt 504
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||| | ||||||||| | ||||| || | || || ||||| ||||||||||| Sbjct: 64028 ccacgacgagatcgacatggagctgctggggacggtgccgggggagccgtacacgctgca 64087 Query: 509 gacgaacgtgtacgtccggggcagcggcgacgg 541 ||||||||| ||||| || ||| ||||||||| Sbjct: 64088 gacgaacgtctacgtgcgcggctccggcgacgg 64120
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||| | ||||||||| | ||||| || | || || ||||| ||||||||||| Sbjct: 20801629 ccacgacgagatcgacatggagctgctggggacggtgccgggggagccgtacacgctgca 20801688 Query: 509 gacgaacgtgtacgtccggggcagcggcgacgg 541 ||||||||| ||||| || ||| ||||||||| Sbjct: 20801689 gacgaacgtctacgtgcgcggctccggcgacgg 20801721
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgca 508 |||||||||| | ||||||||| | ||||| || | || || ||||| ||||||||||| Sbjct: 20812893 ccacgacgagatcgacatggagctgctggggacggtgccgggggagccgtacacgctgca 20812952 Query: 509 gacgaacgtgtacgtccggggcagcggcgacgg 541 ||||||||| ||||| || ||| ||||||||| Sbjct: 20812953 gacgaacgtctacgtgcgcggctccggcgacgg 20812985
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 448 tccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgc 507 ||||||| ||||||||| |||||||||| |||| | || |||| |||| |||||||||| Sbjct: 290 tccacgatgaggtggacctggagttcctcggcaacgtcaccgggcagccgtacacgctgc 349 Query: 508 agacgaacgt 517 | || ||||| Sbjct: 350 acaccaacgt 359
>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein Length = 1187 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 468 gagttcctgggcaccatccccggcgagccctacacgctgcagacgaacgt 517 ||||||||||||| | || | |||||||||||||||||||| || ||||| Sbjct: 430 gagttcctgggcaacgtcacgggcgagccctacacgctgcacaccaacgt 479
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 448 tccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgc 507 ||||||| ||||||||| |||||||||| |||| | || |||| |||| |||||||||| Sbjct: 150403 tccacgatgaggtggacctggagttcctcggcaacgtcaccgggcagccgtacacgctgc 150344 Query: 508 agacgaacgt 517 | || ||||| Sbjct: 150343 acaccaacgt 150334 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||| | ||| ||||||||||||||| Sbjct: 141798 ccacgacgagatcgacctggagttcctgggca 141767
>gb|AF443603.1|AF443603 Oryza sativa xyloglucan endotransglycosylase mRNA, complete cds Length = 1162 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 448 tccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgc 507 ||||||| ||||||||| |||||||||| |||| | || |||| |||| |||||||||| Sbjct: 362 tccacgatgaggtggacctggagttcctcggcaacgtcaccgggcagccgtacacgctgc 421 Query: 508 agacgaacgt 517 | || ||||| Sbjct: 422 acaccaacgt 431
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 448 tccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgc 507 ||||||| ||||||||| |||||||||| |||| | || |||| |||| |||||||||| Sbjct: 30517026 tccacgatgaggtggacctggagttcctcggcaacgtcaccgggcagccgtacacgctgc 30516967 Query: 508 agacgaacgt 517 | || ||||| Sbjct: 30516966 acaccaacgt 30516957 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||| | ||| ||||||||||||||| Sbjct: 30508421 ccacgacgagatcgacctggagttcctgggca 30508390
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full insert sequence Length = 977 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctacctgtc 424 |||||||||| ||||||| || ||||||||||| |||||| ||||||||||| Sbjct: 273 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctacctgtc 326
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full insert sequence Length = 1109 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 448 tccacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgc 507 ||||||| ||||||||| |||||||||| |||| | || |||| |||| |||||||||| Sbjct: 380 tccacgatgaggtggacctggagttcctcggcaacgtcaccgggcagccgtacacgctgc 439 Query: 508 agacgaacgt 517 | || ||||| Sbjct: 440 acaccaacgt 449
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence Length = 1053 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctacctgtc 424 |||||||||| ||||||| || ||||||||||| |||||| ||||||||||| Sbjct: 270 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctacctgtc 323
>ref|XM_463978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggc 401 ||||||||||||| ||| ||||||||||||| Sbjct: 558 catcaagctcccctccgactacaccgccggc 588 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatcc 486 ||||||||| ||||| | ||||||||||||| ||||| Sbjct: 637 cacgacgagctggacttcgagttcctgggcaacatcc 673
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggca 480 ||||||||||||||| | ||||||||||||| Sbjct: 28754714 cacgacgaggtggacttcgagttcctgggca 28754744 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 28750011 ccggcgagccgtacacgctgcacaccaacgtgt 28750043
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggc 401 ||||||||||||| ||| ||||||||||||| Sbjct: 125859 catcaagctcccctccgactacaccgccggc 125889 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatcc 486 ||||||||| ||||| | ||||||||||||| ||||| Sbjct: 126751 cacgacgagctggacttcgagttcctgggcaacatcc 126787
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggca 480 ||||||||||||||| | ||||||||||||| Sbjct: 62489 cacgacgaggtggacttcgagttcctgggca 62519 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 57786 ccggcgagccgtacacgctgcacaccaacgtgt 57818
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggca 480 ||||||||||||||| | ||||||||||||| Sbjct: 155280 cacgacgaggtggacttcgagttcctgggca 155310 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 150577 ccggcgagccgtacacgctgcacaccaacgtgt 150609
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggc 401 ||||||||||||| ||| ||||||||||||| Sbjct: 8008 catcaagctcccctccgactacaccgccggc 8038 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatcc 486 ||||||||| ||||| | ||||||||||||| ||||| Sbjct: 8900 cacgacgagctggacttcgagttcctgggcaacatcc 8936
>dbj|AK073018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H23, full insert sequence Length = 1562 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggc 401 ||||||||||||| ||| ||||||||||||| Sbjct: 558 catcaagctcccctccgactacaccgccggc 588 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatcc 486 ||||||||| ||||| | ||||||||||||| ||||| Sbjct: 637 cacgacgagctggacttcgagttcctgggcaacatcc 673
>ref|XM_750315.1| Aspergillus fumigatus Af293 RNA helicase Dbp (Afu2g10750) partial mRNA Length = 1698 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 cagcctctccttgctcccggccatgg 135 ||||||||||||||||||||| |||| Sbjct: 556 cagcctctccttgctcccggcgatgg 581
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caagctccccgccggctacaccgccg 399 ||||||||||||||||||| |||||| Sbjct: 19908020 caagctccccgccggctacgccgccg 19908045 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||||||||| | |||||||| |||| Sbjct: 13727111 ccacgacgaggtggacttcgagttcctcggca 13727080
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0217C03 Length = 58309 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caagctccccgccggctacaccgccg 399 ||||||||||||||||||| |||||| Sbjct: 15106 caagctccccgccggctacgccgccg 15131
>dbj|AK065112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O03, full insert sequence Length = 1843 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caagctccccgccggctacaccgccg 399 ||||||||||||||||||| |||||| Sbjct: 1064 caagctccccgccggctacgccgccg 1089
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 44.1 bits (22), Expect = 0.49 Identities = 58/70 (82%) Strand = Plus / Plus Query: 450 cacgacgaggtggacatggagttcctgggcaccatccccggcgagccctacacgctgcag 509 ||||||||| | ||| | ||||||||||||| | | ||| ||||||||||||||||| Sbjct: 417 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 476 Query: 510 acgaacgtgt 519 || ||||||| Sbjct: 477 accaacgtgt 486
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 124 tcccggccatggcgctgctgctcctg 149 ||||||||| |||||||||||||||| Sbjct: 2152947 tcccggccacggcgctgctgctcctg 2152922
>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds Length = 1088 Score = 44.1 bits (22), Expect = 0.49 Identities = 46/54 (85%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctacctgtc 424 |||||||||| || |||| || ||||||||||| |||||| ||||||||||| Sbjct: 283 catcaagctcgtcggcggcgactccgccggcaccgtcaccgccttctacctgtc 336
>ref|NM_022511.2| Rattus norvegicus profilin 1 (Pfn1), mRNA Length = 862 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 126 cccggccatggcgctgctgct 106
>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence Length = 807 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 317 ccggcgagccgtacacgctgcacaccaacgtgt 349
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctac 419 |||||||||| ||||||| || ||||||||||| |||||| |||||| Sbjct: 113309 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctac 113357
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctac 419 |||||||||| ||||||| || ||||||||||| |||||| |||||| Sbjct: 12928 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctac 12976
>ref|XM_848667.1| PREDICTED: Canis familiaris similar to Urocortin precursor (LOC611041), mRNA Length = 381 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 atggcgctgctgctcctggca 152 ||||||||||||||||||||| Sbjct: 31 atggcgctgctgctcctggca 51
>emb|Z98751.1|HS560B9 Human DNA sequence from clone RP4-560B9 on chromosome 1q24-25 Contains three processed pseudogenes and the VAMP4 gene for vesicle-associated membrane protein 4, complete sequence Length = 99074 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 2157 cccggccatggcgctgctgct 2177
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 177425 cccggccatggcgctgctgct 177445
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 aacggctacttcgccacccgc 371 ||||||||||||||||||||| Sbjct: 66288 aacggctacttcgccacccgc 66268
>emb|AL596117.19| Mouse DNA sequence from clone RP23-326P7 on chromosome 11 Contains the Gp1ba gene for glycoprotein 1b alpha polypeptide, the Slc25a11 gene for solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier) member 11, the gene for a novel PA domain and C3HC4 type zinc finger (RING finger) containing protein, the Pfn1 gene for profilin 1, five novel genes, the Eno3 gene for muscle enolase 3 beta, the Spag7 gene for sperm associated antigen 7, the Kif1c gene for kinesin family member 1C, a ribosomal protein 37A (Rpl37a) pseudogene, the gene for a novel zinc finger protein and six CpG islands, complete sequence Length = 207086 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 21836 cccggccatggcgctgctgct 21856
>dbj|AK131636.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500038L17 product:unclassifiable, full insert sequence Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 374 cccggccatggcgctgctgct 394
>dbj|AK150780.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015F09 product:profilin 1, full insert sequence Length = 820 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 136 cccggccatggcgctgctgct 116
>dbj|AK152491.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830076F02 product:profilin 1, full insert sequence Length = 851 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 165 cccggccatggcgctgctgct 145
>dbj|AK160191.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410026M17 product:profilin 1, full insert sequence Length = 852 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 165 cccggccatggcgctgctgct 145
>dbj|AK034932.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430063L06 product:profilin 1, full insert sequence Length = 1999 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 138 cccggccatggcgctgctgct 118
>dbj|AK028117.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010010C10 product:profilin 1, full insert sequence Length = 807 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 130 cccggccatggcgctgctgct 110
>dbj|AK011066.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510040G14 product:profilin 1, full insert sequence Length = 854 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 164 cccggccatggcgctgctgct 144
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctac 419 |||||||||| ||||||| || ||||||||||| |||||| |||||| Sbjct: 19010111 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctac 19010159
>gb|AC093766.3| Homo sapiens BAC clone RP11-98O2 from 4, complete sequence Length = 168569 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gaccattcggccatcaccatc 299 ||||||||||||||||||||| Sbjct: 150067 gaccattcggccatcaccatc 150087
>dbj|BS000130.1| Pan troglodytes chromosome 22 clone:CH251-010A09, map 22, complete sequences Length = 201997 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gctgctgctcctggcaatggc 157 ||||||||||||||||||||| Sbjct: 65487 gctgctgctcctggcaatggc 65507
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence Length = 1208 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 425 ccggcgagccgtacacgctgcacaccaacgtgt 457
>gb|BC002080.1| Mus musculus profilin 1, mRNA (cDNA clone MGC:6236 IMAGE:3490976), complete cds Length = 885 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 152 cccggccatggcgctgctgct 132
>gb|BC062405.1| Rattus norvegicus profilin 1, mRNA (cDNA clone MGC:72445 IMAGE:5623232), complete cds Length = 862 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 126 cccggccatggcgctgctgct 106
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full insert sequence Length = 1208 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 487 ccggcgagccctacacgctgcagacgaacgtgt 519 |||||||||| ||||||||||| || ||||||| Sbjct: 425 ccggcgagccgtacacgctgcacaccaacgtgt 457
>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105 Length = 219256 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gctgctgctcctggcaatggc 157 ||||||||||||||||||||| Sbjct: 65275 gctgctgctcctggcaatggc 65295
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 371 catcaagctccccgccggctacaccgccggcaccaacaccgctttctac 419 |||||||||| ||||||| || ||||||||||| |||||| |||||| Sbjct: 19168760 catcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctac 19168808
>ref|NM_011072.2| Mus musculus profilin 1 (Pfn1), mRNA Length = 854 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cccggccatggcgctgctgct 145 ||||||||||||||||||||| Sbjct: 164 cccggccatggcgctgctgct 144
>dbj|AP001615.1| Homo sapiens genomic DNA, chromosome 21, clone:KB657H6, MX1-D21S171 region, complete sequence Length = 124516 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gctgctgctcctggcaatggc 157 ||||||||||||||||||||| Sbjct: 5392 gctgctgctcctggcaatggc 5412
>dbj|AP001614.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042A8, MX1-D21S171 region, complete sequence Length = 81896 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gctgctgctcctggcaatggc 157 ||||||||||||||||||||| Sbjct: 49616 gctgctgctcctggcaatggc 49636
>ref|XM_450915.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1457 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||||||||| | |||||||| |||| Sbjct: 403 ccacgacgaggtggacttcgagttcctcggca 434
>ref|XM_473787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||| | ||| ||||||||||||||| Sbjct: 315 ccacgacgagatcgacctggagttcctgggca 346
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence Length = 184327 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tccttgctcccggccatggc 136 |||||||||||||||||||| Sbjct: 160980 tccttgctcccggccatggc 160999
>ref|NM_021114.1| Homo sapiens serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) (SPINK2), mRNA Length = 594 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 91 tggcgctgctgctcctggca 110
>gb|BC022514.1| Homo sapiens serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor), mRNA (cDNA clone MGC:26562 IMAGE:4812189), complete cds Length = 631 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 92 tggcgctgctgctcctggca 111
>ref|XM_383918.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03742.1) partial mRNA Length = 2415 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 atggcgctgctgctcctggc 151 |||||||||||||||||||| Sbjct: 617 atggcgctgctgctcctggc 636
>gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tccttgctcccggccatggc 136 |||||||||||||||||||| Sbjct: 187906 tccttgctcccggccatggc 187887
>emb|AL356753.16| Human DNA sequence from clone RP11-481G8 on chromosome 10 Contains the 5'end of a novel gene containing FLJ40930, gene FLJ35875, the RAI17 gene for retinoic acid induced 17, a novel gene and two CpG islands, complete sequence Length = 183460 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 gtggacatggagttcctggg 478 |||||||||||||||||||| Sbjct: 148359 gtggacatggagttcctggg 148378
>emb|X68331.1|MFACTRYIN M.fascicularis mRNA for acrosin-trypsin inhibitor Length = 535 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 26 tggcgctgctgctcctggca 45
>emb|X57655.1|HSHUSIII H.sapiens RNA for acrosin-trypsin inhibitor (HUSI-II) Length = 594 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 91 tggcgctgctgctcctggca 110
>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5 Length = 316900 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cgtacaggaacggctacttc 362 |||||||||||||||||||| Sbjct: 180332 cgtacaggaacggctacttc 180351
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggcaatggcggt 160 ||||||||||||||||||| ||| |||| Sbjct: 790343 tggcgctgctgctcctggccatgtcggt 790370
>gb|AC022483.7| Homo sapiens BAC clone RP11-533F5 from 4, complete sequence Length = 205640 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 139137 tggcgctgctgctcctggca 139118
>emb|CR542135.1| Homo sapiens full open reading frame cDNA clone RZPDo834H0125D for gene SPINK2, serine protease inhibitor, Kazal type, 2 (acrosin-trypsin inhibitor); complete cds, without stopcodon Length = 252 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 23 tggcgctgctgctcctggca 42
>gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome 9, complete sequence Length = 225286 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gctgctgctcctggcaatgg 156 |||||||||||||||||||| Sbjct: 60951 gctgctgctcctggcaatgg 60970
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acggctacttcgccacccgc 371 |||||||||||||||||||| Sbjct: 1675133 acggctacttcgccacccgc 1675152
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||||||||| | |||||||| |||| Sbjct: 125225 ccacgacgaggtggacttcgagttcctcggca 125194
>dbj|AK122079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N05, full insert sequence Length = 1621 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||||||||| | |||||||| |||| Sbjct: 595 ccacgacgaggtggacttcgagttcctcggca 626
>dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full insert sequence Length = 1041 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||| | ||| ||||||||||||||| Sbjct: 378 ccacgacgagatcgacctggagttcctgggca 409
>dbj|AK060495.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E08, full insert sequence Length = 1457 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 ccacgacgaggtggacatggagttcctgggca 480 |||||||||||||||| | |||||||| |||| Sbjct: 403 ccacgacgaggtggacttcgagttcctcggca 434
>emb|CT030635.8| Mouse DNA sequence from clone RP23-94N7 on chromosome 9, complete sequence Length = 228508 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gctgctgctcctggcaatgg 156 |||||||||||||||||||| Sbjct: 64136 gctgctgctcctggcaatgg 64117
>gb|M91438.1|HUMHUSII Human kazal-type serine proteinase (HUSI-II) gene, complete cds Length = 597 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 88 tggcgctgctgctcctggca 107
>gb|M84967.1|HUMHUSIIIA Human acrosin-trypsin inhibitor (HUSI-II) gene Length = 1780 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcgctgctgctcctggca 152 |||||||||||||||||||| Sbjct: 1147 tggcgctgctgctcctggca 1166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,758,572 Number of Sequences: 3902068 Number of extensions: 3758572 Number of successful extensions: 61814 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60921 Number of HSP's gapped (non-prelim): 884 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
