ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart34b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1) mRNA, complete cds Length = 1360 Score = 93.7 bits (47), Expect = 9e-17 Identities = 83/95 (87%) Strand = Plus / Plus Query: 5 gacctgctggccgccgacgactttccggagcccatccccctcatcgatcttacccggctc 64 ||||||||||||||| |||| | |||||||||||||| ||||| || |||| ||||||| Sbjct: 127 gacctgctggccgcccacgaaatgccggagcccatccctctcattgaccttagccggctc 186 Query: 65 acggacgtcgacgaggccgaaaggctccgggcggc 99 | ||||| |||||||||||| | |||||||||||| Sbjct: 187 atggacgccgacgaggccgacaagctccgggcggc 221
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.074 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 ccggctcacggacgtcgacgag 79 |||||||||||||||||||||| Sbjct: 4560844 ccggctcacggacgtcgacgag 4560865
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 aggccgaaaggctccgggcggcgc 101 ||||||||| |||||||||||||| Sbjct: 2006697 aggccgaaacgctccgggcggcgc 2006720
>gb|AY271627.1| Amycolatopsis azurea N-acylamino acid racemase (aaar) and beta-lactamase-like protein genes, complete cds; and unknown genes Length = 8960 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 cctgctggccgccgacgac 25 ||||||||||||||||||| Sbjct: 3715 cctgctggccgccgacgac 3733
>gb|AF139593.2| Xanthobacter autotrophicus outer membrane receptor-like protein gene, partial cds; and methylene tetrahydromethanopterin dehydrogenase (mtdB), methenyl tetrahydromethanopterin cyclohydrolase (mch), putative tetrahydromethanopterin biosynthesis protein, conserved hypothetical protein, putative tetrahydromethanopterin biosynthesis protein, putative cytochrome C protein, formyltransferase/cyclohydrolase complex subunit C (fhcC), formyltransferase/cyclohydrolase complex subunit D (fhcD), formyltransferase/cyclohydrolase complex subunit A (fhcA), formyltransferase/cyclohydrolase complex subunit B (fhcB), conserved hypothetical protein, and putative protein genes, complete cds Length = 13310 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 cctgctggccgccgacgac 25 ||||||||||||||||||| Sbjct: 5021 cctgctggccgccgacgac 5039
>emb|AJ508984.1|EBE508984 Euphorbia bemarahaensis ITS1, 5.8S rRNA gene and ITS2, specimen voucher Haevermans 99 (P) Length = 642 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggccgaaaggctccgggcg 97 ||||||||||||||||||| Sbjct: 393 ggccgaaaggctccgggcg 375
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 cgacgaggccgaaaggctc 91 ||||||||||||||||||| Sbjct: 524674 cgacgaggccgaaaggctc 524692
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 ggccgaaaggctccgggcggcgc 101 |||||||||| |||||||||||| Sbjct: 2304893 ggccgaaagggtccgggcggcgc 2304915
>gb|AY137296.1| Acridocarpus excelsus isolate 66 clone a internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 696 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggccgaaaggctccgggcg 97 ||||||||||||||||||| Sbjct: 399 ggccgaaaggctccgggcg 381
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 ggccgaaaggctccgggcggcgc 101 |||||||||| |||||||||||| Sbjct: 2304837 ggccgaaagggtccgggcggcgc 2304859
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 ggccgaaaggctccgggcggcgc 101 |||||||||| |||||||||||| Sbjct: 30084 ggccgaaagggtccgggcggcgc 30106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 486,548 Number of Sequences: 3902068 Number of extensions: 486548 Number of successful extensions: 37516 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37109 Number of HSP's gapped (non-prelim): 407 length of query: 103 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 82 effective length of database: 17,151,101,840 effective search space: 1406390350880 effective search space used: 1406390350880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
