ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart34b07 |
|---|---|
| Clone Library Name | barley_pub |
>VE2_HPV41 (P27552) Regulatory protein E2| Length = 387 Score = 35.4 bits (80), Expect = 0.043 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 3 RRRRHHLGSKHVRPPIHPKQRRRRKTEGEKSTPKRERRTSEELCVRGEAAPLRFDS 170 RRR G P+ P +RRR G +S+PK +RRT+ RG F S Sbjct: 227 RRRNEETGE-----PVAPAPKRRRGAYGRRSSPKAQRRTAASPVSRGNGGSSDFTS 277
>IF2_HAEDU (Q7VLI2) Translation initiation factor IF-2| Length = 839 Score = 33.9 bits (76), Expect = 0.12 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Frame = +3 Query: 30 KHVRPPIHP-KQRRRRKTEGEKSTPKRERRT-SEELCVRGEAAPLR 161 K ++PPI P KQ+ KTE +K+TPK E+ +E+ R E A LR Sbjct: 89 KTIQPPIIPGKQKAMPKTEAKKATPKTEKIVDAEKEAKRKEEAELR 134
>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)| Length = 421 Score = 29.3 bits (64), Expect = 3.0 Identities = 9/33 (27%), Positives = 22/33 (66%) Frame = +3 Query: 18 HLGSKHVRPPIHPKQRRRRKTEGEKSTPKRERR 116 H+ + + PP PK+ +++KT+ + P+R+++ Sbjct: 356 HIDAYKIFPPTEPKKDKKKKTDEAQPLPQRQKK 388
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 28.5 bits (62), Expect = 5.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 Query: 3 RRRRHHLGSKHVRPPIHPKQRRRRKTEGEKSTPKRERRTS 122 R + H H R K RRR K+ +K + RERR S Sbjct: 212 RSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKS 251
>TLK1_CAEEL (P34314) Serine/threonine-protein kinase tousled-like 1 (EC| 2.7.11.1) (Tousled-like kinase 1) Length = 965 Score = 28.5 bits (62), Expect = 5.2 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Frame = +3 Query: 57 KQRRRRKT--EGEKSTPKRERRTSEELCVRGEAA 152 K R+RRK +++TPK+ER+ +E + V GE A Sbjct: 272 KTRKRRKAGPTEDQATPKQERKITEFMKVGGEVA 305
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 28.5 bits (62), Expect = 5.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 Query: 3 RRRRHHLGSKHVRPPIHPKQRRRRKTEGEKSTPKRERRTS 122 R + H H R K RRR K+ +K + RERR S Sbjct: 215 RSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKS 254
>HSP1_CHICK (P15340) Sperm histone (Protamine) (Galline)| Length = 61 Score = 28.5 bits (62), Expect = 5.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 54 PKQRRRRKTEGEKSTPKRERR 116 P+ RRRR+ G + +P+R RR Sbjct: 13 PRSRRRRRRSGRRRSPRRRRR 33
>FGF3_BRARE (P48802) Fibroblast growth factor 3 precursor (FGF-3) (HBGF-3)| Length = 256 Score = 28.5 bits (62), Expect = 5.2 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 9 RRHHLGSKHVRPPIHPKQRRRRKTEGEKSTPKR 107 +RHH GS R P+ +RRRR+ G K +R Sbjct: 223 QRHHTGSH--RAPVGRAERRRRRHRGSKGHNRR 253
>YRM5_CAEEL (Q09601) Hypothetical protein R06F6.5| Length = 378 Score = 28.1 bits (61), Expect = 6.8 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 37 SVH--PSIQSSGEGEKQKEKNPPQNASAGQARNFACEARP 150 SVH PS+ SGE + +N P N S G +F+ +P Sbjct: 85 SVHWSPSLVQSGEKSAAQTQNTPANLSFGGNSSFSAPTKP 124
>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 436 Score = 28.1 bits (61), Expect = 6.8 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 49 SIQSSGEGEKQKEKNPPQNASAGQARNFACEARPPRSD 162 + QSS +++ + P + SA + NF +RPPR + Sbjct: 295 NFQSSSRPPRREREEPDIDWSAARGSNFQSSSRPPRRE 332
>INP5E_RAT (Q9WVR1) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) (5-phosphatase that induces arborization) (Pharbin) Length = 647 Score = 28.1 bits (61), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 39 RPPIHPKQRRRRKTEGEKSTPKRERRTSEELCVRGEAAPLR 161 +PPI PK R + + +R R + E+L V+ A+P R Sbjct: 77 QPPIRPKLERTLSLDDKGWRRRRFRGSQEDLTVQNGASPCR 117
>INP5E_MOUSE (Q9JII1) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 647 Score = 28.1 bits (61), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 39 RPPIHPKQRRRRKTEGEKSTPKRERRTSEELCVRGEAAPLR 161 +PPI PK R + + +R R + E+L V+ A+P R Sbjct: 77 QPPIRPKLERTLSLDDKGWRRRRFRGSQEDLTVQNGASPCR 117
>NCAP_CVHSA (P59595) Nucleocapsid protein (N structural protein) (NC)| Length = 422 Score = 28.1 bits (61), Expect = 6.8 Identities = 9/33 (27%), Positives = 21/33 (63%) Frame = +3 Query: 18 HLGSKHVRPPIHPKQRRRRKTEGEKSTPKRERR 116 H+ + PP PK+ +++KT+ + P+R+++ Sbjct: 357 HIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKK 389
>LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha subunit)| Length = 3333 Score = 27.7 bits (60), Expect = 8.9 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 31 NTSVHPSIQSS-GEGEKQKEKNPPQNASAGQARNFACEARPPRSDSIR 171 N+++ P Q G +K K+ PQ++ G RNF +++P S S R Sbjct: 3097 NSTISPREQVYLGLSPSRKSKSLPQHSFVGCLRNFQLDSKPLDSPSAR 3144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.122 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,442,689 Number of Sequences: 219361 Number of extensions: 355196 Number of successful extensions: 1388 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1386 length of database: 80,573,946 effective HSP length: 32 effective length of database: 73,554,394 effective search space used: 1765305456 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
