ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 198 1e-47
2gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 198 1e-47
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
4dbj|AK070491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
5gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare str... 198 1e-47
6gb|AY104170.1| Zea mays PCO105394 mRNA sequence 180 3e-42
7emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chr... 44 0.48
8gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, co... 42 1.9
9dbj|AK084076.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 1.9
10gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, comple... 42 1.9
11gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome... 40 7.5
12gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome... 40 7.5
13emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in ... 40 7.5
14emb|AL031736.16|HS738P11 Human DNA sequence from clone RP4-738P1... 40 7.5
15emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 7.5
16gb|AC069014.21|AC069014 Mus musculus 11 BAC RP23-278K23 (Roswell... 40 7.5
17gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell ... 40 7.5
18emb|AL356020.3|CNS05TDA Human chromosome 14 DNA sequence BAC R-5... 40 7.5
19gb|AC109168.10| Mus musculus chromosome 19, clone RP23-480L24, c... 40 7.5
20emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chr... 40 7.5
21emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-3... 40 7.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Minus

                                                                            
Query: 292      gaagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttagg 351
                |||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||| |||
Sbjct: 13174712 gaagaaatgtcaggaggtaggcaatcatactggtgctaccaatgtagacagcgggtgagg 13174653

                                                                            
Query: 352      ccgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggat 411
                || || |||| ||| ||||||||||| || |||||||| || |||||| |||||||||||
Sbjct: 13174652 ccccgcggccaggatatggagtgtccctattgtgattccggttttgtgtctgaaatggat 13174593

                                                                            
Query: 412      gatgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgaccca 471
                ||||| |||||||||||| |||| |||||||||| | |   ||||||||||||||| |||
Sbjct: 13174592 gatgttgatgctctcatgcgccactttgttgggatggatcctgatttccatcgtgatcca 13174533

                                                    
Query: 472      aggtttgggatcatggaggcaatgtctgccgtgatg 507
                || || || |||||||||||||| ||||| ||||||
Sbjct: 13174532 agattcggtatcatggaggcaatctctgctgtgatg 13174497
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                         
Query: 292   gaagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttagg 351
             |||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||| |||
Sbjct: 51926 gaagaaatgtcaggaggtaggcaatcatactggtgctaccaatgtagacagcgggtgagg 51985

                                                                         
Query: 352   ccgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggat 411
             || || |||| ||| ||||||||||| || |||||||| || |||||| |||||||||||
Sbjct: 51986 ccccgcggccaggatatggagtgtccctattgtgattccggttttgtgtctgaaatggat 52045

                                                                         
Query: 412   gatgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgaccca 471
             ||||| |||||||||||| |||| |||||||||| | |   ||||||||||||||| |||
Sbjct: 52046 gatgttgatgctctcatgcgccactttgttgggatggatcctgatttccatcgtgatcca 52105

                                                 
Query: 472   aggtttgggatcatggaggcaatgtctgccgtgatg 507
             || || || |||||||||||||| ||||| ||||||
Sbjct: 52106 agattcggtatcatggaggcaatctctgctgtgatg 52141
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Minus

                                                                            
Query: 292      gaagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttagg 351
                |||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||| |||
Sbjct: 13171487 gaagaaatgtcaggaggtaggcaatcatactggtgctaccaatgtagacagcgggtgagg 13171428

                                                                            
Query: 352      ccgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggat 411
                || || |||| ||| ||||||||||| || |||||||| || |||||| |||||||||||
Sbjct: 13171427 ccccgcggccaggatatggagtgtccctattgtgattccggttttgtgtctgaaatggat 13171368

                                                                            
Query: 412      gatgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgaccca 471
                ||||| |||||||||||| |||| |||||||||| | |   ||||||||||||||| |||
Sbjct: 13171367 gatgttgatgctctcatgcgccactttgttgggatggatcctgatttccatcgtgatcca 13171308

                                                    
Query: 472      aggtttgggatcatggaggcaatgtctgccgtgatg 507
                || || || |||||||||||||| ||||| ||||||
Sbjct: 13171307 agattcggtatcatggaggcaatctctgctgtgatg 13171272
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>dbj|AK070491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J20, full
           insert sequence
          Length = 1231

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                       
Query: 292 gaagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttagg 351
           |||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||| |||
Sbjct: 193 gaagaaatgtcaggaggtaggcaatcatactggtgctaccaatgtagacagcgggtgagg 252

                                                                       
Query: 352 ccgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggat 411
           || || |||| ||| ||||||||||| || |||||||| || |||||| |||||||||||
Sbjct: 253 ccccgcggccaggatatggagtgtccctattgtgattccggttttgtgtctgaaatggat 312

                                                                       
Query: 412 gatgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgaccca 471
           ||||| |||||||||||| |||| |||||||||| | |   ||||||||||||||| |||
Sbjct: 313 gatgttgatgctctcatgcgccactttgttgggatggatcctgatttccatcgtgatcca 372

                                               
Query: 472 aggtttgggatcatggaggcaatgtctgccgtgatg 507
           || || || |||||||||||||| ||||| ||||||
Sbjct: 373 agattcggtatcatggaggcaatctctgctgtgatg 408
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>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07,
              from chromosome 3, complete sequence
          Length = 149539

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                          
Query: 292    gaagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttagg 351
              |||||||||||||||||||||||  |||| ||||||| ||| |||||||||||||| |||
Sbjct: 145129 gaagaaatgtcaggaggtaggcaatcatactggtgctaccaatgtagacagcgggtgagg 145188

                                                                          
Query: 352    ccgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggat 411
              || || |||| ||| ||||||||||| || |||||||| || |||||| |||||||||||
Sbjct: 145189 ccccgcggccaggatatggagtgtccctattgtgattccggttttgtgtctgaaatggat 145248

                                                                          
Query: 412    gatgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgaccca 471
              ||||| |||||||||||| |||| |||||||||| | |   ||||||||||||||| |||
Sbjct: 145249 gatgttgatgctctcatgcgccactttgttgggatggatcctgatttccatcgtgatcca 145308

                                                  
Query: 472    aggtttgggatcatggaggcaatgtctgccgtgatg 507
              || || || |||||||||||||| ||||| ||||||
Sbjct: 145309 agattcggtatcatggaggcaatctctgctgtgatg 145344
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>gb|AY104170.1| Zea mays PCO105394 mRNA sequence
          Length = 680

 Score =  180 bits (91), Expect = 3e-42
 Identities = 217/259 (83%)
 Strand = Plus / Plus

                                                                       
Query: 293 aagaaatgtcaggaggtaggcagacatattggtgcttccagtgtagacagcgggttaggc 352
           ||||||||||||  || |||||  |||| ||||| | ||||||  ||||| |||| ||||
Sbjct: 358 aagaaatgtcagctggcaggcaagcatactggtgttaccagtgccgacagagggtgaggc 417

                                                                       
Query: 353 cgcgtggccgggagatggagtgtccttactgtgattctggatttgtggctgaaatggatg 412
           | || |||||||||||||  ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 418 cacggggccgggagatggtttgtccctactgcgattctgggtttgtggctgaaatggatg 477

                                                                       
Query: 413 atgtcgatgctctcatgagccaatttgttgggacgtacggtgatttccatcgtgacccaa 472
           |||| ||||||||||||||||| || ||||||||| |   |||||||||||| |||||| 
Sbjct: 478 atgtagatgctctcatgagccacttcgttgggacggatcctgatttccatcgcgacccac 537

                                                                       
Query: 473 ggtttgggatcatggaggcaatgtctgccgtgatgcgacatggaatgaggagcatgaatc 532
           |||| |||||||||||||| || || ||||||||||| ||||| |||    | ||||| |
Sbjct: 538 ggttcgggatcatggaggcgatctccgccgtgatgcggcatggtatggcagggatgaacc 597

                              
Query: 533 gagaggttgatgtaagagg 551
           | ||||||||||| |||||
Sbjct: 598 gggaggttgatgtcagagg 616
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>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete
              sequence
          Length = 186045

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 411    tgatgtcgatgctctcatgagc 432
              ||||||||||||||||||||||
Sbjct: 137089 tgatgtcgatgctctcatgagc 137110
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>gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, complete sequence
          Length = 218363

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 292    gaagaaatgtcaggaggtaggcaga 316
              |||||||||||||| ||||||||||
Sbjct: 101037 gaagaaatgtcagggggtaggcaga 101013
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>dbj|AK084076.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130084B18
            product:unclassifiable, full insert sequence
          Length = 2554

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 258  cttccttttggtttatttgtg 278
            |||||||||||||||||||||
Sbjct: 1072 cttccttttggtttatttgtg 1052
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>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence
          Length = 165641

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 258   cttccttttggtttatttgtg 278
             |||||||||||||||||||||
Sbjct: 89708 cttccttttggtttatttgtg 89728
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>gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome 6, complete
            sequence
          Length = 173936

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  ttccatcgtgacccaaggtt 476
            ||||||||||||||||||||
Sbjct: 4513 ttccatcgtgacccaaggtt 4532
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>gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome 6, complete sequence
          Length = 179078

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ttccatcgtgacccaaggtt 476
             ||||||||||||||||||||
Sbjct: 55147 ttccatcgtgacccaaggtt 55128
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>emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in linkage group 7, complete
              sequence
          Length = 235090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    gcttccttttggtttatttg 276
              ||||||||||||||||||||
Sbjct: 127240 gcttccttttggtttatttg 127221
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>emb|AL031736.16|HS738P11 Human DNA sequence from clone RP4-738P11 on chromosome 1q24.1-24.3
             Contains the XCL2 gene for chemokine (C motif) ligand 2,
             the XCL1 gene for chemokine (C motif) ligand 1 and two
             ribosomal protein L7a (RPL7A) pseudogenes, complete
             sequence
          Length = 147419

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   tccttactgtgattctggatttgt 398
             |||||||| |||||||||||||||
Sbjct: 12992 tccttactatgattctggatttgt 12969
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    gggcgacgagtgcggcggcc 110
             ||||||||||||||||||||
Sbjct: 90838 gggcgacgagtgcggcggcc 90819
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>gb|AC069014.21|AC069014 Mus musculus 11 BAC RP23-278K23 (Roswell Park Cancer Institute Mouse
             BAC Library) complete sequence
          Length = 181557

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 534   agaggttgatgtaagaggaa 553
             ||||||||||||||||||||
Sbjct: 18687 agaggttgatgtaagaggaa 18706
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>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse
            BAC Library) complete sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  agaggttgatgtaagaggaa 553
            ||||||||||||||||||||
Sbjct: 6988 agaggttgatgtaagaggaa 6969
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>emb|AL356020.3|CNS05TDA Human chromosome 14 DNA sequence BAC R-547D23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171951

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    tttggtttatttgtgaggca 283
              ||||||||||||||||||||
Sbjct: 156438 tttggtttatttgtgaggca 156457
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>gb|AC109168.10| Mus musculus chromosome 19, clone RP23-480L24, complete sequence
          Length = 190309

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tcatgagccaatttgttggg 444
             ||||||||||||||||||||
Sbjct: 16651 tcatgagccaatttgttggg 16632
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>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete
             sequence
          Length = 239847

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   agaggttgatgtaagaggaa 553
             ||||||||||||||||||||
Sbjct: 41303 agaggttgatgtaagaggaa 41284
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>emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-368P15 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155692

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  tttggtttatttgtgaggca 283
            ||||||||||||||||||||
Sbjct: 5968 tttggtttatttgtgaggca 5987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,360,737
Number of Sequences: 3902068
Number of extensions: 3360737
Number of successful extensions: 63108
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63019
Number of HSP's gapped (non-prelim): 84
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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