ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-F... 34 0.25
2CSP_PLACB (P08672) Circumsporozoite protein precursor (CS) 32 1.2
3CAPP2_CHLRE (Q6R2V6) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1... 32 1.6
4PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ... 31 2.8
5AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coi... 31 2.8
6CB029_HUMAN (Q9UKZ1) Protein C2orf29 31 2.8
7NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i... 30 3.6
8GUN5_TRIRE (P43317) Endoglucanase-5 precursor (EC 3.2.1.4) (Endo... 30 3.6
9FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related p... 30 4.7
10CYSP7_DICDI (Q94504) Cysteine proteinase 7 precursor (EC 3.4.22.... 30 4.7
11NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i... 30 6.1
12YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific... 30 6.1
13RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-) 29 8.0
14PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7... 29 8.0
15CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (C... 29 8.0
16OPAP_DROME (P23488) Male-specific opa-containing protein precurs... 29 8.0

>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLA-GRAN---GSLVG*RCPRAQATDSS 93
           A AP AS     G+ PP  +P+  G  G G  QLA G A    G+ VG   P++   D  
Sbjct: 2   ASAPPASPP---GSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP 58

Query: 92  SYGCAAGGRPR 60
           + G AA G  R
Sbjct: 59  APGAAADGGAR 69



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>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGC 81
           AG   A+   Q G     G P A G+  GG+    G   G+  G     AQA  +++   
Sbjct: 211 AGGQPAAGGNQAGGNRAGGQPAAGGNQAGGQPAAGGNQAGAQAGGNQAGAQAGGANAGNK 270

Query: 80  AAG 72
            AG
Sbjct: 271 KAG 273



 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGC 81
           AG   A+   Q G     G P A G+  GG R     A G   G +     A   +  G 
Sbjct: 195 AGGQPAAGGNQAGGNRAGGQPAAGGNQAGGNRAGGQPAAG---GNQAGGQPAAGGNQAGA 251

Query: 80  AAGG 69
            AGG
Sbjct: 252 QAGG 255



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>CAPP2_CHLRE (Q6R2V6) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEP|
           carboxylase 2) (PEPCase 2) (PEPC 2)
          Length = 1221

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
 Frame = -2

Query: 263 NAGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANG---------SLVG*RCPRA 111
           +A +   SA     A    G+  A G+SGGG    AG A           S +G   P  
Sbjct: 350 DAASHGGSAASAAAAAAAGGDVVADGTSGGGAAAAAGPAAAAAADDAFTFSRLGRPRPER 409

Query: 110 QATDSSSYGCAAGG 69
            +TD  S G  AGG
Sbjct: 410 PSTDVRSVGVLAGG 423



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>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 257 GAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANG 141
           G P    QQQ G  PP G P+     GG      GR  G
Sbjct: 72  GPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQG 110



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>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)|
           (LCCP)
          Length = 779

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 239 AQQQTGARPPAGNPKASGSSGGGRRQ 162
           A QQ G RP AG+    G+ GG RRQ
Sbjct: 118 AAQQAGTRPHAGDRDPRGAPGGSRRQ 143



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>CB029_HUMAN (Q9UKZ1) Protein C2orf29|
          Length = 510

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
 Frame = -2

Query: 257 GAPAAS-----AQQQTGARPPAGNPKAS--GSSGGGRRQLAGRANGS 138
           GA AAS     A +Q G+R  AG+   S  G SGGGR   +G  +GS
Sbjct: 5   GASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGS 51



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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2067

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
 Frame = -2

Query: 257 GAPAAS-----AQQQTGARPPAGNPKASG----SSGGGRRQLAGRAN---GSLVG*RCPR 114
           G+PA+S      QQQ G RPP  NP + G     S  GR  +  + N     +V  + P 
Sbjct: 442 GSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPP 501

Query: 113 AQATDSSSYGCAAGGRPRR 57
            Q   S   G   GG P+R
Sbjct: 502 NQGPQSLHPG--LGGMPKR 518



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>GUN5_TRIRE (P43317) Endoglucanase-5 precursor (EC 3.2.1.4) (Endoglucanase V)|
           (Endo-1,4-beta-glucanase V) (Cellulase V) (EG V)
          Length = 242

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 251 PAASAQQQTGARPPAGNPKASGS---SGGGRRQLAGRANGS 138
           P       TG+ PP  +P A+ S   SGGG++ L G+  G+
Sbjct: 176 PTPVLGNDTGSTPPGSSPPATSSSPPSGGGQQTLYGQCGGA 216



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>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
          Length = 465

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGG 171
           A A AA+A Q + +  P   P A GSSGGG
Sbjct: 380 AAAQAAAAAQASPSPSPVAAPPAPGSSGGG 409



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>CYSP7_DICDI (Q94504) Cysteine proteinase 7 precursor (EC 3.4.22.-) (Proteinase|
           1)
          Length = 460

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = -2

Query: 248 AASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGCAAGG 69
           + +A +QTGA   +G+   SG SG G   ++G A+GS  G       A+ SSS   + GG
Sbjct: 358 SGAAVKQTGAGSGSGSGSGSG-SGSGSGSVSGSASGSASG------SASGSSSGSNSNGG 410



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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2063

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
 Frame = -2

Query: 257 GAPAAS-----AQQQTGARPPAGNPKASG----SSGGGRRQLAGRAN---GSLVG*RCPR 114
           G+PA+S      QQQ G RPP  NP   G     S  GR  +  + N     +V  + P 
Sbjct: 438 GSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPP 497

Query: 113 AQATDSSSYGCAAGGRPRR 57
            Q   S   G   GG P+R
Sbjct: 498 NQGPQSLHPG--LGGMPKR 514



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>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (FRGY2 homolog)
          Length = 360

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARP-PAGNP-KASGSSGGGRRQLAGRANGSLV---G*RCPRAQATDS 96
           A  PA +A       P PAG P KA G +GGG    +G A G+ +   G R P  QAT +
Sbjct: 16  ATVPATAAGVVAVVVPVPAGEPQKAGGGAGGGGGAASGPAAGTPLHAPGPRTPGNQATAA 75

Query: 95  S 93
           S
Sbjct: 76  S 76



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>RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 574

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = -2

Query: 248 AASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGCAAGG 69
           AA  Q++ G R   G    SGS GG R   +  A+G     R PR +         AA  
Sbjct: 426 AAEEQRRGGGRSGPGGGSRSGSGGGRRDGASAGADGKPRPRRKPRVEGE-----APAAAA 480

Query: 68  RPRREV*AAAMA 33
           +  + V AAA A
Sbjct: 481 QTEKPVVAAAAA 492



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>PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7.11.1)|
          Length = 556

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 254 APAASAQQQTGARPPAGN--PKASGSSGG 174
           APA  AQQQ  A PP  N  P A GS  G
Sbjct: 370 APAPYAQQQAAATPPPYNLTPSAQGSGSG 398



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>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 753

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 251 PAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSS 90
           PA S    T  RPP+  P   G  G G    +  +N S  G    +  AT  SS
Sbjct: 378 PAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSS 431



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>OPAP_DROME (P23488) Male-specific opa-containing protein precursor (Protein|
           dromsopa)
          Length = 83

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQ 162
           A  PAA+A       PPA  P+A+ + G GR++
Sbjct: 41  AAPPAAAAAPPAPPAPPAAAPQAAPAGGSGRKK 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,689,211
Number of Sequences: 219361
Number of extensions: 731471
Number of successful extensions: 3489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3463
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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