Clone Name | bart33g08 |
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Clone Library Name | barley_pub |
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 34.3 bits (77), Expect = 0.25 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = -2 Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLA-GRAN---GSLVG*RCPRAQATDSS 93 A AP AS G+ PP +P+ G G G QLA G A G+ VG P++ D Sbjct: 2 ASAPPASPP---GSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP 58 Query: 92 SYGCAAGGRPR 60 + G AA G R Sbjct: 59 APGAAADGGAR 69
>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)| Length = 378 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -2 Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGC 81 AG A+ Q G G P A G+ GG+ G G+ G AQA +++ Sbjct: 211 AGGQPAAGGNQAGGNRAGGQPAAGGNQAGGQPAAGGNQAGAQAGGNQAGAQAGGANAGNK 270 Query: 80 AAG 72 AG Sbjct: 271 KAG 273 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/64 (31%), Positives = 24/64 (37%) Frame = -2 Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGC 81 AG A+ Q G G P A G+ GG R A G G + A + G Sbjct: 195 AGGQPAAGGNQAGGNRAGGQPAAGGNQAGGNRAGGQPAAG---GNQAGGQPAAGGNQAGA 251 Query: 80 AAGG 69 AGG Sbjct: 252 QAGG 255
>CAPP2_CHLRE (Q6R2V6) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEP| carboxylase 2) (PEPCase 2) (PEPC 2) Length = 1221 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Frame = -2 Query: 263 NAGAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANG---------SLVG*RCPRA 111 +A + SA A G+ A G+SGGG AG A S +G P Sbjct: 350 DAASHGGSAASAAAAAAAGGDVVADGTSGGGAAAAAGPAAAAAADDAFTFSRLGRPRPER 409 Query: 110 QATDSSSYGCAAGG 69 +TD S G AGG Sbjct: 410 PSTDVRSVGVLAGG 423
>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor| (PRP-1/PRP-2) (Parotid proline-rich protein 1/2) (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa) (Parotid isoelectric focusing variant protein) (PIF-S) (Parotid double-band Length = 166 Score = 30.8 bits (68), Expect = 2.8 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = -2 Query: 257 GAPAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANG 141 G P QQQ G PP G P+ GG GR G Sbjct: 72 GPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQG 110
>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)| (LCCP) Length = 779 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2 Query: 239 AQQQTGARPPAGNPKASGSSGGGRRQ 162 A QQ G RP AG+ G+ GG RRQ Sbjct: 118 AAQQAGTRPHAGDRDPRGAPGGSRRQ 143
>CB029_HUMAN (Q9UKZ1) Protein C2orf29| Length = 510 Score = 30.8 bits (68), Expect = 2.8 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Frame = -2 Query: 257 GAPAAS-----AQQQTGARPPAGNPKAS--GSSGGGRRQLAGRANGS 138 GA AAS A +Q G+R AG+ S G SGGGR +G +GS Sbjct: 5 GASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGS 51
>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2067 Score = 30.4 bits (67), Expect = 3.6 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 12/79 (15%) Frame = -2 Query: 257 GAPAAS-----AQQQTGARPPAGNPKASG----SSGGGRRQLAGRAN---GSLVG*RCPR 114 G+PA+S QQQ G RPP NP + G S GR + + N +V + P Sbjct: 442 GSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPP 501 Query: 113 AQATDSSSYGCAAGGRPRR 57 Q S G GG P+R Sbjct: 502 NQGPQSLHPG--LGGMPKR 518
>GUN5_TRIRE (P43317) Endoglucanase-5 precursor (EC 3.2.1.4) (Endoglucanase V)| (Endo-1,4-beta-glucanase V) (Cellulase V) (EG V) Length = 242 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 251 PAASAQQQTGARPPAGNPKASGS---SGGGRRQLAGRANGS 138 P TG+ PP +P A+ S SGGG++ L G+ G+ Sbjct: 176 PTPVLGNDTGSTPPGSSPPATSSSPPSGGGQQTLYGQCGGA 216
>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)| (Forkhead-related transcription factor 4) (FREAC-4) Length = 465 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -2 Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGG 171 A A AA+A Q + + P P A GSSGGG Sbjct: 380 AAAQAAAAAQASPSPSPVAAPPAPGSSGGG 409
>CYSP7_DICDI (Q94504) Cysteine proteinase 7 precursor (EC 3.4.22.-) (Proteinase| 1) Length = 460 Score = 30.0 bits (66), Expect = 4.7 Identities = 22/60 (36%), Positives = 32/60 (53%) Frame = -2 Query: 248 AASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGCAAGG 69 + +A +QTGA +G+ SG SG G ++G A+GS G A+ SSS + GG Sbjct: 358 SGAAVKQTGAGSGSGSGSGSG-SGSGSGSVSGSASGSASG------SASGSSSGSNSNGG 410
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 29.6 bits (65), Expect = 6.1 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Frame = -2 Query: 257 GAPAAS-----AQQQTGARPPAGNPKASG----SSGGGRRQLAGRAN---GSLVG*RCPR 114 G+PA+S QQQ G RPP NP G S GR + + N +V + P Sbjct: 438 GSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPP 497 Query: 113 AQATDSSSYGCAAGGRPRR 57 Q S G GG P+R Sbjct: 498 NQGPQSLHPG--LGGMPKR 514
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 29.6 bits (65), Expect = 6.1 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = -2 Query: 260 AGAPAASAQQQTGARP-PAGNP-KASGSSGGGRRQLAGRANGSLV---G*RCPRAQATDS 96 A PA +A P PAG P KA G +GGG +G A G+ + G R P QAT + Sbjct: 16 ATVPATAAGVVAVVVPVPAGEPQKAGGGAGGGGGAASGPAAGTPLHAPGPRTPGNQATAA 75 Query: 95 S 93 S Sbjct: 76 S 76
>RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 574 Score = 29.3 bits (64), Expect = 8.0 Identities = 24/72 (33%), Positives = 31/72 (43%) Frame = -2 Query: 248 AASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSSYGCAAGG 69 AA Q++ G R G SGS GG R + A+G R PR + AA Sbjct: 426 AAEEQRRGGGRSGPGGGSRSGSGGGRRDGASAGADGKPRPRRKPRVEGE-----APAAAA 480 Query: 68 RPRREV*AAAMA 33 + + V AAA A Sbjct: 481 QTEKPVVAAAAA 492
>PKSC_STRCO (Q9S2C0) Serine/threonine protein kinase pksC (EC 2.7.11.1)| Length = 556 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -2 Query: 254 APAASAQQQTGARPPAGN--PKASGSSGG 174 APA AQQQ A PP N P A GS G Sbjct: 370 APAPYAQQQAAATPPPYNLTPSAQGSGSG 398
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = -2 Query: 251 PAASAQQQTGARPPAGNPKASGSSGGGRRQLAGRANGSLVG*RCPRAQATDSSS 90 PA S T RPP+ P G G G + +N S G + AT SS Sbjct: 378 PAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSS 431
>OPAP_DROME (P23488) Male-specific opa-containing protein precursor (Protein| dromsopa) Length = 83 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 260 AGAPAASAQQQTGARPPAGNPKASGSSGGGRRQ 162 A PAA+A PPA P+A+ + G GR++ Sbjct: 41 AAPPAAAAAPPAPPAPPAAAPQAAPAGGSGRKK 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,689,211 Number of Sequences: 219361 Number of extensions: 731471 Number of successful extensions: 3489 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3463 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)