>CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)|
          Length = 3354

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
 Frame = +3

Query: 186  DGDYCLSVLDGNVLLAPSDPGDERQEQFMFTRIGAPIQDDEGNPA-------FYLVSKAS 344
            D  + +  + G +   P+ P  ERQ    F  + A ++D EG P        +  +   +
Sbjct: 1573 DMTFRMDRISGEIATRPAPPDRERQS---FYHLVATVED-EGTPTLSATTHVYVTIVDEN 1628

Query: 345  SLGPLALKNTFAQSHPMVLVHLDPNTLDDSLMWTETGDVGDG 470
               P+     F Q H  VL+   P+TL+ SL+  +  D+ +G
Sbjct: 1629 DNAPM-----FQQPHYEVLLDEGPDTLNTSLITIQALDLDEG 1665

>RRMJ_HALMA (Q5UYP9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 263

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 177 LKADGDYCLSVLDGNVLLAPSDPGDERQEQFMFTRIGAPIQDDEGNPAFYLVSKASSLGP 356
           L A GD+C  V DG  L    D   + + +F + R   P    + +   YLV+K    GP
Sbjct: 149 LDAGGDFCAKVFDGQDL---DDLIADIEPEFEYVREVRPDASRDSSSELYLVAKHRLTGP 205

Query: 357 L 359
           +
Sbjct: 206 V 206

>SYFB_RHILO (Q98CQ1) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 802

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 285 GAPI---QDDEGNPAFYLVSKASS--LGPLALKNTFAQSHPMVLVHLD 413
           GAP+   Q + G PA+Y   ++ +  LGP  +  TF + HP  +  LD
Sbjct: 629 GAPVERLQIEAGGPAWYHPGRSGTIKLGPKTVLGTFGEFHPKTMEGLD 676

>MENE_BACCZ (Q632I5) 2-succinylbenzoate--CoA ligase (EC 6.2.1.26) (OSB-CoA|
           synthetase) (o-succinylbenzoyl-CoA synthetase)
          Length = 482

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -1

Query: 224 DVAVEDGQAVVPVGLEEETGVLPVLAESGHGAISRGRWGDLVALDREEHGE--RMHLLRP 51
           D+ +  G+ + P  +EE     P++AE+G   ++  +WG + A    + GE     +L  
Sbjct: 383 DLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITEEEILHF 442

Query: 50  CGSTL-*WRCARKSWW 6
           C   L  ++  +K+W+
Sbjct: 443 CEEKLAKYKVPKKAWF 458

>GIDB_SYNPX (Q7U8J1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 248

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 236 RGEEDVAVEDGQAVVPVGLEEETGVLPVLAESGHGAISRGRWGD 105
           RG  D+A+    A  PV  E    ++P+L   G+  + RG+WGD
Sbjct: 147 RGGFDLAMARAVAAAPVVAEY---LVPLLKPDGNALLYRGQWGD 187

>SPDB_STRLI (P22408) Protein spdB|
          Length = 291

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 218 AVEDGQAVVPVGLEEETGVLPVLAESGHGAISRGRWGDL 102
           A+E    VVP+  EE  G++  L +SG   ++ GR+ D+
Sbjct: 231 AIEGSADVVPLSNEEIDGIMSGLVDSGSYRVAAGRFRDM 269

>RPOB_MARPO (P06272) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1065

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 321 FYLVSKASSLGPLALKNTFAQSHPMVLVHLDPNTLDDSLMWTETGDV 461
           + + ++ +S GP    N        +L HLD N +  +  W ETGDV
Sbjct: 686 YEIEARVTSQGPEKFTNEIPHLDDYLLRHLDQNGIVLTGSWVETGDV 732

>NUOG_SALTY (P0A1Y4) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 907

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 387 HPMVLVHLDPNTLDDSLMWTETGDVGD----GFSYIRALNKT 500
           HP+ + ++D   LDD   WT    V D    GF+   AL+ T
Sbjct: 426 HPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNT 467

>NUOG_SALTI (P0A1Y5) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 907

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 387 HPMVLVHLDPNTLDDSLMWTETGDVGD----GFSYIRALNKT 500
           HP+ + ++D   LDD   WT    V D    GF+   AL+ T
Sbjct: 426 HPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNT 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,056,825
Number of Sequences: 219361
Number of extensions: 1515115
Number of successful extensions: 5018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5015
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)