Clone Name | bart33f08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190737.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 502 bits (253), Expect = e-139 Identities = 400/449 (89%) Strand = Plus / Plus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 14 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 73 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 74 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 133 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 134 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 193 Query: 269 agaacaccgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcg 328 |||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||| Sbjct: 194 agaacaccgtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcg 253 Query: 329 cggtcatcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtga 388 |||| || || || |||||||||||||| |||||||||||||| || ||||| || |||| Sbjct: 254 cggtgattcttggaaggcatttcacctcgctgtacccgcaggtctcagaggcaacggtga 313 Query: 389 cgatcgtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggt 448 | |||| ||||| |||||||||||||||| ||| || |||||||| ||||| || |||| Sbjct: 314 ccatcgccgagcgtccatgggagcgtgtggttgtcgatgggaagcctcattcccacgggt 373 Query: 449 tcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgc 508 ||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | ||| Sbjct: 374 tcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaacttgc 433 Query: 509 ttataaattctgggatacaaggatactcc 537 | ||||||||||| || |||||||||||| Sbjct: 434 tcataaattctggaatccaaggatactcc 462
>dbj|AK071410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089L18, full insert sequence Length = 1259 Score = 502 bits (253), Expect = e-139 Identities = 400/449 (89%) Strand = Plus / Plus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 126 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 185 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 186 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 245 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 246 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 305 Query: 269 agaacaccgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcg 328 |||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||| Sbjct: 306 agaacaccgtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcg 365 Query: 329 cggtcatcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtga 388 |||| || || || |||||||||||||| |||||||||||||| || ||||| || |||| Sbjct: 366 cggtgattcttggaaggcatttcacctcgctgtacccgcaggtctcagaggcaacggtga 425 Query: 389 cgatcgtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggt 448 | |||| ||||| |||||||||||||||| ||| || |||||||| ||||| || |||| Sbjct: 426 ccatcgccgagcgtccatgggagcgtgtggttgtcgatgggaagcctcattcccacgggt 485 Query: 449 tcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgc 508 ||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | ||| Sbjct: 486 tcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaacttgc 545 Query: 509 ttataaattctgggatacaaggatactcc 537 | ||||||||||| || |||||||||||| Sbjct: 546 tcataaattctggaatccaaggatactcc 574
>dbj|AK065779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039E23, full insert sequence Length = 1079 Score = 502 bits (253), Expect = e-139 Identities = 400/449 (89%) Strand = Plus / Plus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 84 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 143 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 144 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 203 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 204 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 263 Query: 269 agaacaccgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcg 328 |||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||| Sbjct: 264 agaacaccgtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcg 323 Query: 329 cggtcatcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtga 388 |||| || || || |||||||||||||| |||||||||||||| || ||||| || |||| Sbjct: 324 cggtgattcttggaaggcatttcacctcgctgtacccgcaggtctcagaggcaacggtga 383 Query: 389 cgatcgtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggt 448 | |||| ||||| |||||||||||||||| ||| || |||||||| ||||| || |||| Sbjct: 384 ccatcgccgagcgtccatgggagcgtgtggttgtcgatgggaagcctcattcccacgggt 443 Query: 449 tcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgc 508 ||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | ||| Sbjct: 444 tcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaacttgc 503 Query: 509 ttataaattctgggatacaaggatactcc 537 | ||||||||||| || |||||||||||| Sbjct: 504 tcataaattctggaatccaaggatactcc 532
>gb|BT024144.1| Zea mays clone EL01N0441B12 mRNA sequence Length = 1312 Score = 474 bits (239), Expect = e-130 Identities = 392/443 (88%) Strand = Plus / Plus Query: 94 ctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgccccgcc 153 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 132 ctccagggccggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcccggcc 191 Query: 154 gaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccgactgc 213 | ||| || ||| || || |||| ||||||| |||||||||||| |||||||||||||| Sbjct: 192 gcggcggggggcgacgtcatcgttgagtggaacgtcgccgtcagtatcgtctccgactgc 251 Query: 214 ctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatcaagaac 273 |||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| Sbjct: 252 ctcccctcctacacctccagcgacaactccgccatcgtcgccacagattccatcaagaac 311 Query: 274 accgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtc 333 ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| || Sbjct: 312 accgtgtatgtcaaggcgaaagagtgcacggaagtggtgtccatggaggaattcgccgtg 371 Query: 334 atcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtgacgatc 393 || || || |||||||||||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct: 372 attcttggaaggcatttcacctcgctgtaccctcaggtttcagaggccacggtgactatc 431 Query: 394 gtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggttcaaa 453 |||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||| Sbjct: 432 gtggagcgcccatgggagcgtgtgactgtcgacggaaagcctcattcgcatgggttcaaa 491 Query: 454 cttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgcttata 513 ||||| ||| ||||||| ||| ||||||| ||| || || |||||||||||||||||| Sbjct: 492 gttggtgttgagaagcacagcacagaggtcattgtaaaaaaatctggaagcctgcttata 551 Query: 514 aattctgggatacaaggatactc 536 |||||||| || ||||||||||| Sbjct: 552 aattctggaattcaaggatactc 574
>gb|AY104272.1| Zea mays PCO147921 mRNA sequence Length = 1402 Score = 474 bits (239), Expect = e-130 Identities = 392/443 (88%) Strand = Plus / Plus Query: 94 ctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgccccgcc 153 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 125 ctccagggccggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcccggcc 184 Query: 154 gaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccgactgc 213 | ||| || ||| || || |||| ||||||| |||||||||||| |||||||||||||| Sbjct: 185 gcggcggggggcgacgtcatcgttgagtggaacgtcgccgtcagtatcgtctccgactgc 244 Query: 214 ctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatcaagaac 273 |||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| Sbjct: 245 ctcccctcctacacctccagcgacaactccgccatcgtcgccacagattccatcaagaac 304 Query: 274 accgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtc 333 ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| || Sbjct: 305 accgtgtatgtcaaggcgaaagagtgcacggaagtggtgtccatggaggaattcgccgtg 364 Query: 334 atcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtgacgatc 393 || || || |||||||||||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct: 365 attcttggaaggcatttcacctcgctgtaccctcaggtttcagaggccacggtgactatc 424 Query: 394 gtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggttcaaa 453 |||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||| Sbjct: 425 gtggagcgcccatgggagcgtgtgactgtcgacggaaagcctcattcgcatgggttcaaa 484 Query: 454 cttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgcttata 513 ||||| ||| ||||||| ||| ||||||| ||| || || |||||||||||||||||| Sbjct: 485 gttggtgttgagaagcacagcacagaggtcattgtaaaaaaatctggaagcctgcttata 544 Query: 514 aattctgggatacaaggatactc 536 |||||||| || ||||||||||| Sbjct: 545 aattctggaattcaaggatactc 567
>gb|BT016676.1| Zea mays clone Contig509 mRNA sequence Length = 1316 Score = 466 bits (235), Expect = e-128 Identities = 391/443 (88%) Strand = Plus / Plus Query: 94 ctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgccccgcc 153 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 113 ctccagggccggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcccggcc 172 Query: 154 gaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccgactgc 213 | ||| || ||| || || |||| ||||||| |||||||||||| |||||||||||||| Sbjct: 173 gcggcggggggcgacgtcatcgttgagtggaacgtcgccgtcagtatcgtctccgactgc 232 Query: 214 ctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatcaagaac 273 |||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| Sbjct: 233 ctcccctcctacacctccagcgacaactccgccatcgtcgccacagattccatcaagaac 292 Query: 274 accgtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtc 333 ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| || Sbjct: 293 accgtgtatgtcaaggcgaaagagtgcacggaagtggtgtccatggaggaattcgccgtg 352 Query: 334 atcctcggcaggcatttcacctccctgtacccgcaggtgtcggaggctacagtgacgatc 393 || || || |||||||||||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct: 353 attcttggaaggcatttcacctcgctgtaccctcaggtttcagaggccacggtgactatc 412 Query: 394 gtggagcgcccatgggagcgtgtggctgtggacgggaagccccattcgcatgggttcaaa 453 |||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||| Sbjct: 413 gtggagcgcccatgggagcgtgtgactggcgacggaaagcctcattcgcatgggttcaaa 472 Query: 454 cttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagcctgcttata 513 ||||| ||| ||||||| ||| ||||||| ||| || || |||||||||||||||||| Sbjct: 473 gttggtgttgagaagcacagcacagaggtcattgtaaaaaaatctggaagcctgcttata 532 Query: 514 aattctgggatacaaggatactc 536 |||||||| || ||||||||||| Sbjct: 533 aattctggaattcaaggatactc 555
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 266 bits (134), Expect = 7e-68 Identities = 176/190 (92%) Strand = Plus / Minus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 37437804 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 37437745 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 37437744 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 37437685 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 37437684 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 37437625 Query: 269 agaacaccgt 278 |||||||||| Sbjct: 37437624 agaacaccgt 37437615 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 277 gtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtcatc 336 |||||||||||||||||||| ||||||||| | || |||||||||||||||||||| || Sbjct: 37437537 gtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcgcggtgatt 37437478 Query: 337 ctcggcaggcatttcacctccctgtacccgcaggt 371 || || |||||||||||||| |||||||||||||| Sbjct: 37437477 cttggaaggcatttcacctcgctgtacccgcaggt 37437443 Score = 89.7 bits (45), Expect = 9e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagc 504 ||||||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | Sbjct: 37436057 gggttcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaac 37435998 Query: 505 ctgcttataaattctgggatacaaggatactcc 537 |||| ||||||||||| || |||||||||||| Sbjct: 37435997 ttgctcataaattctggaatccaaggatactcc 37435965 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 366 gcaggtgtcggaggctacagtgacgatcgtggagcgcccatgggagcgtgtggctgtgga 425 |||||| || ||||| || ||||| |||| ||||| |||||||||||||||| ||| || Sbjct: 37437353 gcaggtctcagaggcaacggtgaccatcgccgagcgtccatgggagcgtgtggttgtcga 37437294 Query: 426 cgggaagccccattc 440 |||||||| ||||| Sbjct: 37437293 tgggaagcctcattc 37437279
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 266 bits (134), Expect = 7e-68 Identities = 176/190 (92%) Strand = Plus / Minus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 32341 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 32282 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 32281 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 32222 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 32221 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 32162 Query: 269 agaacaccgt 278 |||||||||| Sbjct: 32161 agaacaccgt 32152 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 277 gtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtcatc 336 |||||||||||||||||||| ||||||||| | || |||||||||||||||||||| || Sbjct: 32074 gtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcgcggtgatt 32015 Query: 337 ctcggcaggcatttcacctccctgtacccgcaggt 371 || || |||||||||||||| |||||||||||||| Sbjct: 32014 cttggaaggcatttcacctcgctgtacccgcaggt 31980 Score = 89.7 bits (45), Expect = 9e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagc 504 ||||||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | Sbjct: 30594 gggttcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaac 30535 Query: 505 ctgcttataaattctgggatacaaggatactcc 537 |||| ||||||||||| || |||||||||||| Sbjct: 30534 ttgctcataaattctggaatccaaggatactcc 30502 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 366 gcaggtgtcggaggctacagtgacgatcgtggagcgcccatgggagcgtgtggctgtgga 425 |||||| || ||||| || ||||| |||| ||||| |||||||||||||||| ||| || Sbjct: 31890 gcaggtctcagaggcaacggtgaccatcgccgagcgtccatgggagcgtgtggttgtcga 31831 Query: 426 cgggaagccccattc 440 |||||||| ||||| Sbjct: 31830 tgggaagcctcattc 31816
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 266 bits (134), Expect = 7e-68 Identities = 176/190 (92%) Strand = Plus / Minus Query: 89 tcgacctccagggcaggcacggcaagtcccgcgtccgggtctcccgcgtgtggcgccgcc 148 |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 149838 tcgagctccagggcaggcacggcaagtcccgcgtccgcgtctcccgcgtctggcgccgcc 149779 Query: 149 ccgccgaggccggcggccacctcttcgtcgagtggagcgtcgccgtcagcgtcgtctccg 208 |||| | || || |||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct: 149778 ccgcggccgcgggaggccacgtcatcgtcgagtggaacgtggccgtcagcgtcgtctccg 149719 Query: 209 actgcctcccctcctacacctccgacgacaactccgcaatcgtcgccaccgactccatca 268 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 149718 actgcctcccctcctacacctccgacgacaactccgccatcgtcgccaccgattccatca 149659 Query: 269 agaacaccgt 278 |||||||||| Sbjct: 149658 agaacaccgt 149649 Score = 117 bits (59), Expect = 4e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 277 gtgtatgtgaaggccaaggagtgcacggaggtggtgtccatggaggaattcgcggtcatc 336 |||||||||||||||||||| ||||||||| | || |||||||||||||||||||| || Sbjct: 149571 gtgtatgtgaaggccaaggaatgcacggagattgtctccatggaggaattcgcggtgatt 149512 Query: 337 ctcggcaggcatttcacctccctgtacccgcaggt 371 || || |||||||||||||| |||||||||||||| Sbjct: 149511 cttggaaggcatttcacctcgctgtacccgcaggt 149477 Score = 89.7 bits (45), Expect = 9e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaagtctggaagc 504 ||||||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| | Sbjct: 148091 gggttcaaacttggtgttgagaagcacgtcacagaggtcattgtgaagaagtctggaaac 148032 Query: 505 ctgcttataaattctgggatacaaggatactcc 537 |||| ||||||||||| || |||||||||||| Sbjct: 148031 ttgctcataaattctggaatccaaggatactcc 147999 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 366 gcaggtgtcggaggctacagtgacgatcgtggagcgcccatgggagcgtgtggctgtgga 425 |||||| || ||||| || ||||| |||| ||||| |||||||||||||||| ||| || Sbjct: 149387 gcaggtctcagaggcaacggtgaccatcgccgagcgtccatgggagcgtgtggttgtcga 149328 Query: 426 cgggaagccccattc 440 |||||||| ||||| Sbjct: 149327 tgggaagcctcattc 149313
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 8e-09 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand = Plus / Plus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaag----tctgg 500 ||||||||| ||||| ||| ||||||| ||| ||||||| |||||| || ||||| Sbjct: 2491 gggttcaaagttggtgttgagaagcacagcacagaggtcattgtgaaaaaaaaaatctgg 2550 Query: 501 aagcctgcttataaattctgggatacaaggatactc 536 ||||||||||||||||||||| || ||||||||||| Sbjct: 2551 aagcctgcttataaattctggaatccaaggatactc 2586
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 69.9 bits (35), Expect = 8e-09 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand = Plus / Plus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaag----tctgg 500 ||||||||| ||||| ||| ||||||| ||| ||||||| |||||| || ||||| Sbjct: 2491 gggttcaaagttggtgttgagaagcacagcacagaggtcattgtgaaaaaaaaaatctgg 2550 Query: 501 aagcctgcttataaattctgggatacaaggatactc 536 ||||||||||||||||||||| || ||||||||||| Sbjct: 2551 aagcctgcttataaattctggaatccaaggatactc 2586
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 69.9 bits (35), Expect = 8e-09 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand = Plus / Plus Query: 445 gggttcaaacttggttctgaaaagcacaccactgaggtcactgtgaagaag----tctgg 500 ||||||||| ||||| ||| ||||||| ||| ||||||| |||||| || ||||| Sbjct: 11720 gggttcaaagttggtgttgagaagcacagcacagaggtcattgtgaaaaaaaaaatctgg 11779 Query: 501 aagcctgcttataaattctgggatacaaggatactc 536 ||||||||||||||||||||| || ||||||||||| Sbjct: 11780 aagcctgcttataaattctggaatccaaggatactc 11815
>dbj|AB038709.1| Paecilomyces tenuipes gene for uricase, complete cds Length = 1498 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 234 cgacaactccgcaatcgtcgccaccgactccatcaagaacaccgt 278 ||||||||||| ||||||||||||||||||| ||||||||||| Sbjct: 550 cgacaactccgtcgtcgtcgccaccgactccatgaagaacaccgt 594
>dbj|AB038708.1| Tolypocladium inflatum gene for uricase, complete cds Length = 1201 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 250 gtcgccaccgactccatcaagaacacc 276 ||||||||||||||||||||||||||| Sbjct: 223 gtcgccaccgactccatcaagaacacc 249
>dbj|AB027293.1| Nilaparvata lugens yeast-like symbiont gene for uricase, complete cds Length = 2000 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 767 tcgtggccaccgactccatcaagaacacc 795
>dbj|AB038706.1| Cerataphis fransseni yeast-like symbiont gene for uricase, complete cds Length = 1902 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 691 tcgtggccaccgactccatcaagaacacc 719
>dbj|AB038703.1| Tuberaphis taiwana yeast-like symbiont pseudogene for uricase Length = 1613 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 402 tcgtggccaccgactccatcaagaacacc 430
>dbj|AB038702.1| Tuberaphis styraci yeast-like symbiont pseudogene for uricase Length = 1593 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 397 tcgtggccaccgactccatcaagaacacc 425
>dbj|AB038700.1| Ricania japonica yeast-like symbiont gene for uricase, complete cds Length = 1924 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 730 tcgtggccaccgactccatcaagaacacc 758
>dbj|AB038699.1| Laodelphax striatellus yeast-like symbiont gene for uricase, complete cds Length = 1923 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||||||||||||||||||| Sbjct: 732 tcgtggccaccgactccatcaagaacacc 760
>ref|XM_958021.1| Neurospora crassa OR74A hypothetical protein (NCU07853.1) partial mRNA Length = 888 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 250 gtcgccaccgactccatcaagaacaccgtgtatgtgaaggccaaggag 297 ||||| ||||||||||||||||||||| | || | |||||||||||| Sbjct: 166 gtcgctaccgactccatcaagaacaccatctacatcaaggccaaggag 213
>ref|XM_328558.1| Neurospora crassa OR74A hypothetical protein (NCU07853.1) partial mRNA Length = 888 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Plus Query: 250 gtcgccaccgactccatcaagaacaccgtgtatgtgaaggccaaggag 297 ||||| ||||||||||||||||||||| | || | |||||||||||| Sbjct: 166 gtcgctaccgactccatcaagaacaccatctacatcaaggccaaggag 213
>dbj|AB038701.1| Geisha distinctissima yeast-like symbiont gene for uricase, complete cds Length = 1926 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 253 gccaccgactccatcaagaacacc 276 |||||||||||||||||||||||| Sbjct: 738 gccaccgactccatcaagaacacc 761
>dbj|AB038707.1| Beauveria bassiana gene for uricase, partial cds Length = 988 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacaccgt 278 |||||||||||||||| || ||||||||||| Sbjct: 89 tcgtcgccaccgactcgatgaagaacaccgt 119
>gb|AC103590.2| Homo sapiens chromosome 1 clone RP11-544K18, complete sequence Length = 213056 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 367 caggtgtcggaggctacagtga 388 |||||||||||||||||||||| Sbjct: 102621 caggtgtcggaggctacagtga 102600
>ref|XM_359494.1| Magnaporthe grisea 70-15 hypothetical protein (MG05283.4) partial mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| |||||||| ||||||||||||||| Sbjct: 68 tcgttgccaccgattccatcaagaacacc 96
>gb|AY394003.1| Methylobacterium extorquens strain AM1 methylmalonyl-CoA mutase beta subunit (mcmB) gene, complete cds Length = 1818 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 ccgccccgccgaggccggcgg 164 ||||||||||||||||||||| Sbjct: 961 ccgccccgccgaggccggcgg 941
>ref|XM_742515.1| Aspergillus fumigatus Af293 imidazoleglycerol-phosphate dehydratase (Afu6g04700) partial mRNA Length = 735 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 tcgtcgagtggagcgtcgccg 193 ||||||||||||||||||||| Sbjct: 437 tcgtcgagtggagcgtcgccg 417
>gb|AY643478.1| Edwardsiella tarda strain PPD130/91 putative type III secretion system gene cluster, complete sequence Length = 41204 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 cgccccgccgaggccggcggccacc 169 |||||||||||||||| |||||||| Sbjct: 32902 cgccccgccgaggccgccggccacc 32878
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccgcgtccgggtctcccgcgt 137 ||||||||||||||||||||| Sbjct: 92081 ccgcgtccgggtctcccgcgt 92101
>gb|AC055720.17| Homo sapiens 12 BAC RP11-612B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96669 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 ggcaggcatttcacctccctgtacc 364 ||||||||||| ||||||||||||| Sbjct: 90304 ggcaggcatttaacctccctgtacc 90280
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ggcaggcatttcacctccctg 360 ||||||||||||||||||||| Sbjct: 1521420 ggcaggcatttcacctccctg 1521440
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcgccgtcagcgtcgtctccg 208 ||||||||||||||||||||| Sbjct: 41159 tcgccgtcagcgtcgtctccg 41179
>dbj|AB038705.1| Glyphinaphis bambusae yeast-like symbiont pseudogene for uricase Length = 1878 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacacc 276 |||| ||||| |||||||||||||||||| Sbjct: 729 tcgtggccacagactccatcaagaacacc 757
>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence Length = 179077 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tgtatgtgaaggccaaggag 297 |||||||||||||||||||| Sbjct: 67618 tgtatgtgaaggccaaggag 67637
>gb|AC161008.4| Pan troglodytes BAC clone CH251-634F15 from chromosome 7, complete sequence Length = 208418 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 aggtggtgtccatggaggaa 324 |||||||||||||||||||| Sbjct: 50044 aggtggtgtccatggaggaa 50025
>gb|AC147300.3| Pan troglodytes BAC clone RP43-56D24 from 7, complete sequence Length = 200924 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 aggtggtgtccatggaggaa 324 |||||||||||||||||||| Sbjct: 166468 aggtggtgtccatggaggaa 166487
>emb|Z66523.1|CEM05D6 Caenorhabditis elegans Cosmid M05D6, complete sequence Length = 28567 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 tgggttcaaacttggttctgaaaa 467 ||||||||| |||||||||||||| Sbjct: 5574 tgggttcaagcttggttctgaaaa 5551
>emb|AL031658.11|HS310O13 Human DNA sequence from clone RP1-310O13 on chromosome 20q11.2 Contains the 3' end of the C20orf125 gene, the C20orf126 gene, the C20orf159 gene, the C20orf160 gene, a novel gene and four CpG islands, complete sequence Length = 162976 Score = 40.1 bits (20), Expect = 7.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 144 ccgccccgccgaggccggc-ggccacct 170 ||||||||||||||||||| |||||||| Sbjct: 131235 ccgccccgccgaggccggctggccacct 131208
>emb|AJ698901.1| Fusarium fujikuroi mRNA for uricase, clone gsr2 Length = 1211 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 248 tcgtcgccaccgactccatcaagaacac 275 |||| ||||||||||| ||||||||||| Sbjct: 307 tcgttgccaccgactctatcaagaacac 334
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cgccgtcagcgtcgtctccg 208 |||||||||||||||||||| Sbjct: 3677516 cgccgtcagcgtcgtctccg 3677535
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggcgccgccccgccgaggcc 159 |||||||||||||||||||| Sbjct: 256788 ggcgccgccccgccgaggcc 256769
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cacgcatccgcatccgcatc 36 |||||||||||||||||||| Sbjct: 7812 cacgcatccgcatccgcatc 7793
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 cgccgccccgccgaggccggcggc 165 |||||||||||||||| ||||||| Sbjct: 274188 cgccgccccgccgaggtcggcggc 274211
>emb|AL596170.1| Listeria innocua Clip11262 complete genome, segment 8/12 Length = 313450 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 135833 cgcatccgcatccgcatcgg 135852 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 135779 cgcatccgcatccgcatcgg 135798 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 135317 cgcatccgcatccgcatcgg 135336
>gb|AC108481.2| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160986 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 4032 cgcatccgcatccgcatcgg 4051
>ref|NM_167441.2| Drosophila melanogaster CNG channel-like CG9176-RB, transcript variant B (cngl), mRNA Length = 6340 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 4213 cgcatccgcatccgcatcgg 4232
>ref|NM_078608.3| Drosophila melanogaster CNG channel-like CG9176-RC, transcript variant C (cngl), mRNA Length = 5330 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 4213 cgcatccgcatccgcatcgg 4232
>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone BACR36D15, complete sequence Length = 159513 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 30517 cgcatccgcatccgcatcgg 30498
>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete sequence Length = 300468 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tgtatgtgaaggccaaggag 297 |||||||||||||||||||| Sbjct: 264407 tgtatgtgaaggccaaggag 264388
>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence Length = 341520 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 329875 cgcatccgcatccgcatcgg 329856
>gb|AE003430.4| Drosophila melanogaster chromosome X, section 14 of 74 of the complete sequence Length = 296227 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 141363 cgcatccgcatccgcatcgg 141382
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gaggccggcggccacctctt 173 |||||||||||||||||||| Sbjct: 958554 gaggccggcggccacctctt 958573
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 1071662 cgcatccgcatccgcatcgg 1071643
>dbj|AB030577.1| Drosophila melanogaster cngl mRNA for CNG channel-like, complete cds Length = 5358 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cgcatccgcatccgcatcgg 38 |||||||||||||||||||| Sbjct: 4212 cgcatccgcatccgcatcgg 4231
>dbj|AB043135.1| Pisum sativum PsUr mRNA for uricase, partial cds Length = 616 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 442 catgggttcaaacttggttctgaaaagcacac 473 ||||| ||||||||||| ||||| |||||||| Sbjct: 164 catggtttcaaacttggatctgagaagcacac 195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,381,316 Number of Sequences: 3902068 Number of extensions: 3381316 Number of successful extensions: 74740 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74193 Number of HSP's gapped (non-prelim): 548 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)