Clone Name | bart33f07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, complete sequence Length = 216364 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 gcccctctctccgtgcgccggct 39 |||||||||||| |||||||||| Sbjct: 4070 gcccctctctccctgcgccggct 4092
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 gcgccggcttcgtcaccga 49 ||||||||||||||||||| Sbjct: 1881739 gcgccggcttcgtcaccga 1881757
>gb|AC131721.4| Mus musculus BAC clone RP23-142L24 from chromosome 15, complete sequence Length = 230892 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 gcccctctctccgtgcgccggct 39 |||||||||||| |||||||||| Sbjct: 22641 gcccctctctccctgcgccggct 22619
>emb|CR956404.10| Pig DNA sequence from clone PigE-75D22 on chromosome 17, complete sequence Length = 135396 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 gtgcgccggcttcgtcacc 47 ||||||||||||||||||| Sbjct: 127198 gtgcgccggcttcgtcacc 127180
>gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome 9, complete sequence Length = 184288 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 gtcctgatcctccccaccc 69 ||||||||||||||||||| Sbjct: 157922 gtcctgatcctccccaccc 157940
>gb|AY324876.1| Homo sapiens lactoperoxidase (LPO) gene, complete cds Length = 33181 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 tccgcccctctctccgtgc 32 ||||||||||||||||||| Sbjct: 8823 tccgcccctctctccgtgc 8841
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cggcttcgtcaccgacgtc 53 ||||||||||||||||||| Sbjct: 1663350 cggcttcgtcaccgacgtc 1663368
>emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment 12/24 Length = 304850 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cggcttcgtcaccgacgtc 53 ||||||||||||||||||| Sbjct: 132971 cggcttcgtcaccgacgtc 132989
>gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163709 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ccgacgtcctgatcctccc 64 ||||||||||||||||||| Sbjct: 102214 ccgacgtcctgatcctccc 102196
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ccgacgtcctgatcctccc 64 ||||||||||||||||||| Sbjct: 186033 ccgacgtcctgatcctccc 186015
>ref|NM_168106.1| Drosophila melanogaster CG17150-RB, transcript variant B (CG17150), mRNA Length = 612 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ccgacgtcctgatcctccc 64 ||||||||||||||||||| Sbjct: 192 ccgacgtcctgatcctccc 174
>ref|NM_139680.1| Drosophila melanogaster CG17150-RA, transcript variant A (CG17150), mRNA Length = 13173 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ccgacgtcctgatcctccc 64 ||||||||||||||||||| Sbjct: 7989 ccgacgtcctgatcctccc 7971
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 cgccggcttcgtcaccgac 50 ||||||||||||||||||| Sbjct: 26210966 cgccggcttcgtcaccgac 26210984
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 4.4 Identities = 28/31 (90%) Strand = Plus / Plus Query: 55 tgatcctccccacccggaacgttaggctctt 85 |||||||||||||||| ||| | |||||||| Sbjct: 2298502 tgatcctccccacccgaaacatcaggctctt 2298532
>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B11 Length = 179858 Score = 38.2 bits (19), Expect = 4.4 Identities = 28/31 (90%) Strand = Plus / Plus Query: 55 tgatcctccccacccggaacgttaggctctt 85 |||||||||||||||| ||| | |||||||| Sbjct: 160340 tgatcctccccacccgaaacatcaggctctt 160370
>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0433B06 Length = 126258 Score = 38.2 bits (19), Expect = 4.4 Identities = 28/31 (90%) Strand = Plus / Plus Query: 55 tgatcctccccacccggaacgttaggctctt 85 |||||||||||||||| ||| | |||||||| Sbjct: 37541 tgatcctccccacccgaaacatcaggctctt 37571
>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228652 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gcccctctctccgtgcgcc 35 ||||||||||||||||||| Sbjct: 192132 gcccctctctccgtgcgcc 192150
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ccgacgtcctgatcctccc 64 ||||||||||||||||||| Sbjct: 259043 ccgacgtcctgatcctccc 259025
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 cgccggcttcgtcaccgac 50 ||||||||||||||||||| Sbjct: 26139142 cgccggcttcgtcaccgac 26139160
>gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.1171_I_10, complete sequence Length = 175120 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 tccgcccctctctccgtgc 32 ||||||||||||||||||| Sbjct: 167981 tccgcccctctctccgtgc 167963
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 cgccggcttcgtcaccgac 50 ||||||||||||||||||| Sbjct: 101204 cgccggcttcgtcaccgac 101222
>emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chromosome 17, complete sequence Length = 130271 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gtgcgccggcttcgtcacc 47 ||||||||||||||||||| Sbjct: 47565 gtgcgccggcttcgtcacc 47583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 456,425 Number of Sequences: 3902068 Number of extensions: 456425 Number of successful extensions: 27054 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26868 Number of HSP's gapped (non-prelim): 186 length of query: 100 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 79 effective length of database: 17,151,101,840 effective search space: 1354937045360 effective search space used: 1354937045360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)