ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, co... 38 4.4
2gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 4.4
3gb|AC131721.4| Mus musculus BAC clone RP23-142L24 from chromosom... 38 4.4
4emb|CR956404.10| Pig DNA sequence from clone PigE-75D22 on chrom... 38 4.4
5gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome... 38 4.4
6gb|AY324876.1| Homo sapiens lactoperoxidase (LPO) gene, complete... 38 4.4
7emb|CR555306.1| Azoarcus sp. EbN1 complete genome 38 4.4
8emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment ... 38 4.4
9gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswel... 38 4.4
10gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswel... 38 4.4
11ref|NM_168106.1| Drosophila melanogaster CG17150-RB, transcript ... 38 4.4
12ref|NM_139680.1| Drosophila melanogaster CG17150-RA, transcript ... 38 4.4
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
15dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
16dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
17emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-9... 38 4.4
18gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16... 38 4.4
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.4
20gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.11... 38 4.4
21emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388... 38 4.4
22emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chr... 38 4.4

>gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, complete sequence
          Length = 216364

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 17   gcccctctctccgtgcgccggct 39
            |||||||||||| ||||||||||
Sbjct: 4070 gcccctctctccctgcgccggct 4092



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 31      gcgccggcttcgtcaccga 49
               |||||||||||||||||||
Sbjct: 1881739 gcgccggcttcgtcaccga 1881757



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>gb|AC131721.4| Mus musculus BAC clone RP23-142L24 from chromosome 15, complete
             sequence
          Length = 230892

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 17    gcccctctctccgtgcgccggct 39
             |||||||||||| ||||||||||
Sbjct: 22641 gcccctctctccctgcgccggct 22619



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>emb|CR956404.10| Pig DNA sequence from clone PigE-75D22 on chromosome 17, complete
              sequence
          Length = 135396

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     gtgcgccggcttcgtcacc 47
              |||||||||||||||||||
Sbjct: 127198 gtgcgccggcttcgtcacc 127180



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>gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome 9, complete sequence
          Length = 184288

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     gtcctgatcctccccaccc 69
              |||||||||||||||||||
Sbjct: 157922 gtcctgatcctccccaccc 157940



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>gb|AY324876.1| Homo sapiens lactoperoxidase (LPO) gene, complete cds
          Length = 33181

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 14   tccgcccctctctccgtgc 32
            |||||||||||||||||||
Sbjct: 8823 tccgcccctctctccgtgc 8841



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 35      cggcttcgtcaccgacgtc 53
               |||||||||||||||||||
Sbjct: 1663350 cggcttcgtcaccgacgtc 1663368



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>emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment 12/24
          Length = 304850

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     cggcttcgtcaccgacgtc 53
              |||||||||||||||||||
Sbjct: 132971 cggcttcgtcaccgacgtc 132989



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>gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163709

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ccgacgtcctgatcctccc 64
              |||||||||||||||||||
Sbjct: 102214 ccgacgtcctgatcctccc 102196



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>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 187437

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ccgacgtcctgatcctccc 64
              |||||||||||||||||||
Sbjct: 186033 ccgacgtcctgatcctccc 186015



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>ref|NM_168106.1| Drosophila melanogaster CG17150-RB, transcript variant B (CG17150),
           mRNA
          Length = 612

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 46  ccgacgtcctgatcctccc 64
           |||||||||||||||||||
Sbjct: 192 ccgacgtcctgatcctccc 174



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>ref|NM_139680.1| Drosophila melanogaster CG17150-RA, transcript variant A (CG17150),
            mRNA
          Length = 13173

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 46   ccgacgtcctgatcctccc 64
            |||||||||||||||||||
Sbjct: 7989 ccgacgtcctgatcctccc 7971



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 32       cgccggcttcgtcaccgac 50
                |||||||||||||||||||
Sbjct: 26210966 cgccggcttcgtcaccgac 26210984



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                              
Query: 55      tgatcctccccacccggaacgttaggctctt 85
               |||||||||||||||| ||| | ||||||||
Sbjct: 2298502 tgatcctccccacccgaaacatcaggctctt 2298532



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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 55     tgatcctccccacccggaacgttaggctctt 85
              |||||||||||||||| ||| | ||||||||
Sbjct: 160340 tgatcctccccacccgaaacatcaggctctt 160370



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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0433B06
          Length = 126258

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 55    tgatcctccccacccggaacgttaggctctt 85
             |||||||||||||||| ||| | ||||||||
Sbjct: 37541 tgatcctccccacccgaaacatcaggctctt 37571



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>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 228652

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     gcccctctctccgtgcgcc 35
              |||||||||||||||||||
Sbjct: 192132 gcccctctctccgtgcgcc 192150



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>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete
              sequence
          Length = 302417

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ccgacgtcctgatcctccc 64
              |||||||||||||||||||
Sbjct: 259043 ccgacgtcctgatcctccc 259025



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 32       cgccggcttcgtcaccgac 50
                |||||||||||||||||||
Sbjct: 26139142 cgccggcttcgtcaccgac 26139160



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>gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.1171_I_10, complete sequence
          Length = 175120

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     tccgcccctctctccgtgc 32
              |||||||||||||||||||
Sbjct: 167981 tccgcccctctctccgtgc 167963



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>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144241

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     cgccggcttcgtcaccgac 50
              |||||||||||||||||||
Sbjct: 101204 cgccggcttcgtcaccgac 101222



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>emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chromosome 17, complete
             sequence
          Length = 130271

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    gtgcgccggcttcgtcacc 47
             |||||||||||||||||||
Sbjct: 47565 gtgcgccggcttcgtcacc 47583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 456,425
Number of Sequences: 3902068
Number of extensions: 456425
Number of successful extensions: 27054
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26868
Number of HSP's gapped (non-prelim): 186
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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