ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Pro... 32 0.95
2ZN406_MOUSE (Q7TS63) Zinc finger protein 406 31 1.6
3FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote... 30 2.1
4ASTL_HUMAN (Q6HA08) Astacin-like metalloendopeptidase precursor ... 30 2.1
5CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21 30 2.8
6MYC2_SPEBE (Q64210) N-myc 2 proto-oncogene protein 30 3.6
7MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein 30 3.6
8DD31_DICDI (Q02465) Prespore protein Dd31 29 4.7
9ACDA1_METKA (Q8TXF7) Acetyl-CoA decarbonylase/synthase complex a... 29 6.2
10SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II) 28 8.1
11SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II) 28 8.1
12YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulate... 28 8.1
13UL24_HHV11 (P10208) Protein UL24 28 8.1

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)|
          Length = 1217

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 143  PPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPS 292
            PPR+ SS + S+T P AP++  VQA  R  +        A A  P  +PS
Sbjct: 903  PPRSASSTKSSSTDPPAPKHRKVQA--RGSEHKGSSGDAANAANPFPVPS 950



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>ZN406_MOUSE (Q7TS63) Zinc finger protein 406|
          Length = 1219

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +2

Query: 134 SAFPP---RARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHME 304
           SA PP    A S  QH  +A        +           P+SS  G QK   LP+    
Sbjct: 598 SAEPPAAAEATSDTQHRDSAQTQGEEVTLLLAKAKSAGPDPESSPGGRQKVGALPA---- 653

Query: 305 SVCENTTTADFKQSNFSNFLPSVRSGGWSDIG 400
           S  +++T      +  S+ LP+V  GG  D+G
Sbjct: 654 SESDSSTCLRANPTEASDLLPTVTDGG--DLG 683



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>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 173 STTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPH 298
           S+ +P APR   V+A    +          G Q P+  PSPH
Sbjct: 458 SSESPAAPRTIKVEAAEEPEATRASGPGEPGPQAPSRTPSPH 499



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>ASTL_HUMAN (Q6HA08) Astacin-like metalloendopeptidase precursor (EC 3.4.-.-)|
           (Oocyte astacin) (Ovastacin)
          Length = 431

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +2

Query: 146 PRARSSHQHSTTAPVAPRNAGVQAGMRADDAGR----PDSSHAGAQKPAELP--SPH 298
           PR R SH HST    AP +  +Q  + A  A      P  S AG Q     P  SPH
Sbjct: 288 PRGRGSHAHSTGKSPAPASLSLQRLLEALSAESRSPDPSGSSAGGQPVPAGPGESPH 344



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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 143 PPRARSSHQHSTTAPVA---PRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMES 307
           P R  S+H  ST++      PR          D + R  SSHA  + P    + H+ S
Sbjct: 196 PARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVAS 253



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>MYC2_SPEBE (Q64210) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +2

Query: 137 AFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMESV 310
           A   + +  H+ + T P       V     A  AGR  S  AGA  PAEL  P  E V
Sbjct: 130 AMSEKMQHGHEPAATGPATQ----VPGAGAASTAGRGHSGTAGAALPAELAHPAAECV 183



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>MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +2

Query: 137 AFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSPHMESV 310
           A   + +  H+ + T P       V     A  AGR  S  AGA  PAEL  P  E V
Sbjct: 130 AMSEKMQHGHEPAATGPATQ----VPGAGAASPAGRGHSGTAGAALPAELAHPAAECV 183



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>DD31_DICDI (Q02465) Prespore protein Dd31|
          Length = 269

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 260 AGAQKPAELPSPHMESVCENTTTADFKQSNFSNFLPSVRSGGWSDIGSRQYME 418
           A  Q  A++  PH+  V     TA  +Q+NF +  P +R     DI  R+Y +
Sbjct: 57  ANNQSAADITGPHV--VVPAPATAHPRQANFPSSYPMIRLNLEEDIAIREYRQ 107



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>ACDA1_METKA (Q8TXF7) Acetyl-CoA decarbonylase/synthase complex alpha subunit 1|
           (EC 1.2.99.2) (ACDS complex alpha subunit 1) (ACDS
           complex carbon monoxide dehydrogenase 1) (ACDS CODH 1)
          Length = 760

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -2

Query: 367 WKEIAEVTLLEIGSCGVLTNTLHMXXXXXXXXXRSGVARIGPPGVVRAHAGL 212
           +KEIA+  L  IG+CGVL  T+            +G  R G P +V   AGL
Sbjct: 586 FKEIADYILNRIGACGVLWGTM----SQKALAISTGFTRWGIP-IVYGPAGL 632



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>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)|
          Length = 586

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = +2

Query: 125 LPLSAFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDS---SHAGAQKPAELPSP 295
           LP     P + SS   S+++  AP+  G       D +   +S   + A    PA+ P P
Sbjct: 478 LPSGPSLPSSSSSSSSSSSSSSAPQRPGGPTTTHGDASSSSNSLAEAQAPQAAPAQKPQP 537

Query: 296 HMESVCENTTTADFKQSNFSNFLPS 370
           H +     + T  F  S  S F  S
Sbjct: 538 HPQLNKSQSLTNAFSFSESSFFRSS 562



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>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)|
          Length = 582

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = +2

Query: 128 PLSAFPPRARSSHQHSTTAPVAPRNAGVQAGMRADDAGRPDSSHAGAQ----KPAELPSP 295
           P  + PP + SS   S++AP  P            DA    SS A AQ     P + P P
Sbjct: 479 PGPSLPPSSSSSSSSSSSAPQRPGGPTTHG-----DAPSSSSSLAEAQPPLAAPPQKPQP 533

Query: 296 HMESVCENTTTADFKQSNFSNFLPS 370
           H +     + T  F  S  S F  S
Sbjct: 534 HPQLNKSQSLTNAFSFSESSFFRSS 558



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>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)|
           (NY-REN-2 antigen) (CLL-associated antigen KW-14)
          Length = 579

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +2

Query: 128 PLSAFPPR-ARSSHQHSTTAP---VAPRNAGVQAGMRADDAGRPDSSHAGAQKPAELPSP 295
           PL   PP+ A+ S Q     P   VAPRN G   G    D      S AG+      P P
Sbjct: 328 PLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHP 387

Query: 296 HMESV 310
            +E +
Sbjct: 388 VLEKL 392



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>UL24_HHV11 (P10208) Protein UL24|
          Length = 269

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 179 TAPVAPRNAGVQ---AGMRADDAGRPDSSHAGAQKPAELPSPHMESVCENTTTAD 334
           T P+ PR    +    G     A RP  SH+GA+ P E  +  +    +  T+ +
Sbjct: 188 TVPIEPRTQRARRRRGGAARGSASRPKRSHSGARDPPESAARQLPPADQTPTSTE 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,354,339
Number of Sequences: 219361
Number of extensions: 786174
Number of successful extensions: 2824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2822
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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