ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart33e05 |
|---|---|
| Clone Library Name | barley_pub |
>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 92.4 bits (228), Expect = 8e-19 Identities = 62/153 (40%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Frame = +3 Query: 99 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ 278 MP++YCDYCDTYLTHDSPSVRK H +G KHK NV++YYQ++ E+Q QSLID+ Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53 Query: 279 AAAFQVG----APFNQHLLQYPGNMSRPRLPILPTXXXXXXXXXXXXXXXXFARPPILXX 446 AAFQ G APF+ P P P LP PP Sbjct: 54 TAAFQQGKIPPAPFS---APPPAGAMIPPPPSLP-------------------GPPRPGM 91 Query: 447 XXXXXXXXXXXXXLPGAPPGSMPMQVAPLPGLR 545 + G PP M M V P PG+R Sbjct: 92 MPAPHMGGPPMMPMMGPPPPGM-MPVGPAPGMR 123
>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 91.3 bits (225), Expect = 2e-18 Identities = 60/150 (40%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Frame = +3 Query: 99 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ 278 MP++YCDYCDTYLTHDSPSVRK H +G KHK NV++YYQ++ E+Q QSLID+ Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53 Query: 279 AAAFQVG-APFNQHLLQYPGNMSRPRLPILPTXXXXXXXXXXXXXXXXFARPPILXXXXX 455 AAFQ G P P P P LP PP Sbjct: 54 TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLP-------------------GPPRPGMMPA 94 Query: 456 XXXXXXXXXXLPGAPPGSMPMQVAPLPGLR 545 + G PP M M V P PG+R Sbjct: 95 PHMGGPPMMPMMGPPPPGM-MPVGPAPGMR 123
>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 90.5 bits (223), Expect = 3e-18 Identities = 42/67 (62%), Positives = 51/67 (76%) Frame = +3 Query: 99 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ 278 MP++YCDYCDTYLTHDSPSVRK H +G KHK NV++YYQ++ E+Q QSLID+ Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53 Query: 279 AAAFQVG 299 AAFQ G Sbjct: 54 TAAFQQG 60
>RU1C_YEAST (Q05900) U1 small nuclear ribonucleoprotein C homolog (U1 snRNP| protein C) (U1-C) Length = 231 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = +3 Query: 99 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQ 215 M RYYC+YC +YLTHD+ SVRK H G H +YY+ Sbjct: 1 MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYR 39
>WBP4_MOUSE (Q61048) WW domain-binding protein 4 (WBP-4) (Formin-binding| protein 21) Length = 376 Score = 36.2 bits (82), Expect = 0.066 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Frame = +3 Query: 96 AMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQR--IKEH 269 + P+ +CDYC ++ + PSV + H G HK NV + +++ ++ KE Sbjct: 7 SQPKKFCDYCKCWIADNRPSV-EFHERGKNHKENVARRISEIKQKSLDKAKEEEKASKEF 65 Query: 270 LG-QAAAFQVGAPFNQHL-LQYPGNMSRPRL-PILPT 371 +AAA + + L L P ++S P + P++ T Sbjct: 66 AAMEAAALKAYQEDLKRLGLPLPSDISEPTVSPVIST 102
>WBP4_RAT (Q5HZF2) WW domain-binding protein 4 (WBP-4)| Length = 374 Score = 35.0 bits (79), Expect = 0.15 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 96 AMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQ 230 + P+ +CDYC ++ + PSV + H G HK NV + +++ Sbjct: 7 SQPKKFCDYCKCWIADNRPSV-EFHERGKNHKENVARKISEIKQK 50
>WBP4_HUMAN (O75554) WW domain-binding protein 4 (WBP-4) (Formin-binding| protein 21) Length = 376 Score = 35.0 bits (79), Expect = 0.15 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 96 AMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQ 230 + P+ +CDYC ++ + PSV + H G HK NV + +++ Sbjct: 7 SQPKKFCDYCKCWIADNRPSV-EFHERGKNHKENVAKRISEIKQK 50
>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed| Length = 552 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = +2 Query: 311 PTSSSISRKYVPSPSSNSAHTHDAXXXXXXXXXXXAVCK--ASYFTSSWRSRLSWCSNHA 484 P SSS S P P+SN++ + C AS SS SRL + Sbjct: 318 PLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSSRLGASGSGV 377 Query: 485 TARGPSWFNAYAGGTSPRPQTLPPPTS 565 A +SP+PQ +PPP++ Sbjct: 378 NA------------SSPQPQPIPPPSA 392
>WBP4_CHICK (Q5F457) WW domain-binding protein 4 (WBP-4)| Length = 398 Score = 33.5 bits (75), Expect = 0.43 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +3 Query: 96 AMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQ 239 + P+ +CDYC ++ + PS+ H G HK NV + ++ + Sbjct: 7 SQPKKFCDYCKCWIADNRPSI-DFHERGKNHKENVAKRISEIRKKSME 53
>SPY_DROME (O44783) Protein sprouty (Spry)| Length = 589 Score = 33.5 bits (75), Expect = 0.43 Identities = 25/80 (31%), Positives = 35/80 (43%) Frame = +3 Query: 117 DYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQAAAFQV 296 +Y DT L H + R QH AG + ++ Q+ Q L Q+ ++HL Q Q Sbjct: 200 EYVDTPLQH---ATRSQHPAGQQDNGQTTTHHLLLLPQRNQHLHLQQHQQHLQQQQQQQQ 256 Query: 297 GAPFNQHLLQYPGNMSRPRL 356 QH LQ+ N RL Sbjct: 257 QQQQQQH-LQHQQNQQHARL 275
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 32.7 bits (73), Expect = 0.73 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Frame = +2 Query: 293 SWRSFQPTSSSISRK--YVPSPSSNSAH-THDAXXXXXXXXXXXAVCKASYFTSSWRSRL 463 SWR+ TS+S + Y SPSS + T ++ S FT + RS + Sbjct: 329 SWRNATQTSASNKTRDPYNYSPSSADYYNTRKKENYPVDNTTSSSIAAPSNFTVATRSPV 388 Query: 464 SWCSNHATARGPSWFNAYAGGTSPRPQTLPP 556 + S+ A+ P+ + G SPR PP Sbjct: 389 AALSHPASIAAPASVGSLTGSISPRLSLRPP 419
>DHE2_NEUCR (P00365) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 1050 Score = 32.3 bits (72), Expect = 0.96 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 461 LSWCSNHATARGPSWFNAYAGGTSPRPQTLP 553 + W + HA ARG W+ ++ G SPR +P Sbjct: 656 VDWATEHARARGAPWWKSFFTGKSPRLGGIP 686
>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)| Length = 1073 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/66 (34%), Positives = 34/66 (51%) Frame = +3 Query: 129 TYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQAAAFQVGAPF 308 T T S + QH+ H+ + N QQ ++QQ Q Q+ +EHL Q Q+ +P Sbjct: 269 TTTTSASAAGHHQHHNHLLHQQH-HNQQQQQQQQQQQQQQQQQQQEHLQQQHQQQLVSP- 326 Query: 309 NQHLLQ 326 QHLL+ Sbjct: 327 QQHLLK 332
>RL22_HALMA (P10970) 50S ribosomal protein L22P (Hmal22) (Hl23)| Length = 154 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 117 DYCDTYLTHDSPSVRKQHNAGYKHKANVRNY-YQQFEEQQTQSLID 251 DY + + D P KQHN+G HK+ V + ++ E+ +++ +D Sbjct: 45 DYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLD 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,857,903 Number of Sequences: 219361 Number of extensions: 1551576 Number of successful extensions: 5199 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5188 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
