ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
2dbj|AK060957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
3gb|AY107278.1| Zea mays PCO146711 mRNA sequence 262 1e-66
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
5dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
6ref|NM_116546.1| Arabidopsis thaliana nucleic acid binding / rho... 96 2e-16
7dbj|AK221730.1| Arabidopsis thaliana mRNA for putative C-type U1... 96 2e-16
8gb|BT004807.1| Arabidopsis thaliana At4g03120 gene, complete cds 86 1e-13
9gb|AY089040.1| Arabidopsis thaliana clone 20753 mRNA, complete s... 74 6e-10
10gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV... 68 3e-08
11emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 68 3e-08
12gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21... 66 1e-07
13gb|U52002.2| Caenorhabditis elegans cosmid F08B4, complete sequence 48 0.032
14ref|XM_532115.2| PREDICTED: Canis familiaris similar to U1 small... 48 0.032
15dbj|AB211519.1| Lycopersicon esculentum mRNA for similar to u1 s... 48 0.032
16ref|NM_069089.3| Caenorhabditis elegans F08B4.7 (F08B4.7) mRNA, ... 48 0.032
17gb|AY099526.1| Danio rerio U1 small nuclear ribonucleoprotein C ... 44 0.49
18ref|NM_173251.2| Danio rerio small nuclear ribonucleoprotein pol... 44 0.49
19gb|BC091442.1| Danio rerio small nuclear ribonucleoprotein polyp... 44 0.49
20gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Can... 42 1.9
21gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cance... 42 1.9
22gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosom... 42 1.9
23gb|AC104465.4| Homo sapiens chromosome 1 clone RP5-1051D14, comp... 42 1.9
24gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome... 42 1.9
25emb|AL109934.22|HSDJ81L22 Human DNA sequence from clone RP1-81L2... 42 1.9
26ref|XM_784104.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.9
27ref|NM_142510.1| Drosophila melanogaster CG5454-RA (CG5454), mRNA 42 1.9
28ref|NM_137311.2| Drosophila melanogaster unc-104 CG8566-RD (unc-... 42 1.9
29gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53... 42 1.9
30gb|AC007891.8|AC007891 Drosophila melanogaster, chromosome 3R, r... 42 1.9
31gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome 3R, r... 42 1.9
32gb|BT003460.1| Drosophila melanogaster RH29440 full insert cDNA 42 1.9
33gb|AF247761.1|AF247761 Drosophila melanogaster kinesin superfami... 42 1.9
34gb|AE003724.3| Drosophila melanogaster chromosome 3R, section 62... 42 1.9
35gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45... 42 1.9
36gb|AC004341.1|AC004341 Drosophila melanogaster DNA sequence (P1 ... 42 1.9
37gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome... 40 7.7
38gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 7.7
39gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8... 40 7.7
40ref|XM_872762.1| PREDICTED: Bos taurus similar to U1 small nucle... 40 7.7
41ref|XM_864260.1| PREDICTED: Bos taurus similar to U1 small nucle... 40 7.7
42gb|BC014445.1| Homo sapiens EH-domain containing 2, mRNA (cDNA c... 40 7.7
43ref|NM_014601.2| Homo sapiens EH-domain containing 2 (EHD2), mRNA 40 7.7
44ref|XM_538895.2| PREDICTED: Canis familiaris similar to U1 small... 40 7.7
45gb|BC062554.1| Homo sapiens EH-domain containing 2, mRNA (cDNA c... 40 7.7
46gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome... 40 7.7
47gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosom... 40 7.7
48ref|NM_003093.1| Homo sapiens small nuclear ribonucleoprotein po... 40 7.7
49emb|AL356261.23| Human DNA sequence from clone RP11-49J3 on chro... 40 7.7
50emb|BX537773.1|HSM805859 Homo sapiens genomic DNA; cDNA DKFZp686... 40 7.7
51gb|AC008745.7| Homo sapiens chromosome 19 clone CTD-2571L23, com... 40 7.7
52emb|CR625497.1| full-length cDNA clone CS0DI015YO22 of Placenta ... 40 7.7
53dbj|AK097228.1| Homo sapiens cDNA FLJ39909 fis, clone SPLEN20179... 40 7.7
54dbj|AK097126.1| Homo sapiens cDNA FLJ39807 fis, clone SPLEN20084... 40 7.7
55emb|CR609202.1| full-length cDNA clone CS0DB002YO03 of Neuroblas... 40 7.7
56emb|CR607936.1| full-length cDNA clone CS0DK008YB14 of HeLa cell... 40 7.7
57emb|CR603118.1| full-length cDNA clone CS0DC024YD01 of Neuroblas... 40 7.7
58dbj|AK074701.1| Homo sapiens cDNA FLJ90220 fis, clone MAMMA10031... 40 7.7
59gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park C... 40 7.7
60gb|AF454952.1|AF454952 Homo sapiens EH domain-containing protein... 40 7.7
61gb|AC151733.5| Mus musculus BAC clone RP23-89N20 from chromosome... 40 7.7
62dbj|AB179001.1| Macaca fascicularis testis cDNA clone: QtsA-1126... 40 7.7
63emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on ch... 40 7.7
64gb|BC066555.1| Danio rerio membrane-associated ring finger (C3HC... 40 7.7
65gb|BC049066.1| Danio rerio membrane-associated ring finger (C3HC... 40 7.7
66ref|NM_199739.2| Danio rerio membrane-associated ring finger (C3... 40 7.7
67gb|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K... 40 7.7
68dbj|AK223098.1| Homo sapiens mRNA for small nuclear ribonucleopr... 40 7.7
69gb|AC000015.2| Homo sapiens chromosome 12 clone B271E1, complete... 40 7.7
70gb|AC138304.1| Homo sapiens chromosome 16 clone CTD-2588J6, comp... 40 7.7
71dbj|AK026134.1| Homo sapiens cDNA: FLJ22481 fis, clone HRC10846,... 40 7.7
72gb|AY610382.1| Sus scrofa clone rese17c_a21.y1.abd, mRNA sequence 40 7.7
73emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 i... 40 7.7
74emb|X12517.1|HSU1RNPC Human mRNA for U1 small nuclear RNP-specif... 40 7.7 
>dbj|AK073513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043C12, full
           insert sequence
          Length = 1033

 Score =  278 bits (140), Expect = 2e-71
 Identities = 245/280 (87%)
 Strand = Plus / Plus

                                                                       
Query: 94  ccgcgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccat 153
           |||||||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||
Sbjct: 113 ccgcgatgcctcggtactattgcgactactgcgacacctacctgacccatgactctccat 172

                                                                       
Query: 154 ctgtccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatc 213
           |||||||||| || ||||||||||| || ||||| |||||||||||||| | ||||||||
Sbjct: 173 ctgtccgtaaacagcacaatgctgggtacaaacataaggcaaatgttcgaacctactatc 232

                                                                       
Query: 214 agcaattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaacacctag 273
           | ||||| |||||||||||||||||||| |||||||||||||| || || ||||| || |
Sbjct: 233 aacaatttgaggagcagcaaactcaaagcttgattgatcaaagaattaaagaacatcttg 292

                                                                       
Query: 274 gacaagccgcagcgttccaagttggcgctcctttcaaccaacatcttcttcaatatccag 333
           ||||||| ||||| ||||||||||| ||||||||||| |||||||||||   || |||||
Sbjct: 293 gacaagctgcagctttccaagttggtgctcctttcaatcaacatcttctctcatttccag 352

                                                   
Query: 334 gaaatatgtcccgtccccgtcttccaattctgcccacacc 373
           ||  | || | ||||| ||||||||||||||||| |||||
Sbjct: 353 gaggtgtgcctcgtcctcgtcttccaattctgccaacacc 392



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 501 cctggttcaatgcctatgcaggtggcacctctccc-aggcctcagacactaccacctcca 559
           |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 562 cctggttctatgcctatgcagatggcacctctcccaaggcctccgacactaccacctcca 621

                  
Query: 560 acatctg 566
           |||||||
Sbjct: 622 acatctg 628



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 426 aggcctcctattttaccagttcctggcgctccaggttatcctggtgctccaa 477
           |||||||||||||| |||| ||||||   |||||||||||||||||||||||
Sbjct: 448 aggcctcctattttgccagctcctggtattccaggttatcctggtgctccaa 499
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>dbj|AK060957.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G11, full
           insert sequence
          Length = 1168

 Score =  278 bits (140), Expect = 2e-71
 Identities = 245/280 (87%)
 Strand = Plus / Plus

                                                                       
Query: 94  ccgcgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccat 153
           |||||||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||
Sbjct: 112 ccgcgatgcctcggtactattgcgactactgcgacacctacctgacccatgactctccat 171

                                                                       
Query: 154 ctgtccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatc 213
           |||||||||| || ||||||||||| || ||||| |||||||||||||| | ||||||||
Sbjct: 172 ctgtccgtaaacagcacaatgctgggtacaaacataaggcaaatgttcgaacctactatc 231

                                                                       
Query: 214 agcaattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaacacctag 273
           | ||||| |||||||||||||||||||| |||||||||||||| || || ||||| || |
Sbjct: 232 aacaatttgaggagcagcaaactcaaagcttgattgatcaaagaattaaagaacatcttg 291

                                                                       
Query: 274 gacaagccgcagcgttccaagttggcgctcctttcaaccaacatcttcttcaatatccag 333
           ||||||| ||||| ||||||||||| ||||||||||| |||||||||||   || |||||
Sbjct: 292 gacaagctgcagctttccaagttggtgctcctttcaatcaacatcttctctcatttccag 351

                                                   
Query: 334 gaaatatgtcccgtccccgtcttccaattctgcccacacc 373
           ||  | || | ||||| ||||||||||||||||| |||||
Sbjct: 352 gaggtgtgcctcgtcctcgtcttccaattctgccaacacc 391



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 501 cctggttcaatgcctatgcaggtggcacctctccc-aggcctcagacactaccacctcca 559
           |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 561 cctggttctatgcctatgcagatggcacctctcccaaggcctccgacactaccacctcca 620

                  
Query: 560 acatctg 566
           |||||||
Sbjct: 621 acatctg 627



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 426 aggcctcctattttaccagttcctggcgctccaggttatcctggtgctccaa 477
           |||||||||||||| |||| ||||||   |||||||||||||||||||||||
Sbjct: 447 aggcctcctattttgccagctcctggtattccaggttatcctggtgctccaa 498
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>gb|AY107278.1| Zea mays PCO146711 mRNA sequence
          Length = 1025

 Score =  262 bits (132), Expect = 1e-66
 Identities = 237/272 (87%)
 Strand = Plus / Plus

                                                                       
Query: 96  gcgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccatct 155
           ||||||||||||||||| || || ||||||||||| || |||||||||||||||||||||
Sbjct: 95  gcgatgcctcggtattactgtgactactgcgacacctacctgacccatgactcgccatct 154

                                                                       
Query: 156 gtccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatcag 215
           ||||| || ||||| ||||||||||| ||||||||||| |||||||| | |||||| |||
Sbjct: 155 gtccggaaacaacataatgctggatacaaacacaaggcgaatgttcgaacctactaccag 214

                                                                       
Query: 216 caattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaacacctagga 275
           ||||| ||||||||||||||||||||||| ||||||||||| |||||||| || || |||
Sbjct: 215 caatttgaggagcagcaaactcaaagtttaattgatcaaagaatcaaggagcatcttgga 274

                                                                       
Query: 276 caagccgcagcgttccaagttggcgctcctttcaaccaacatcttcttcaatatccagga 335
           ||||| ||||| |||||||  || || ||||||||||||||||| |||  ||  ||||||
Sbjct: 275 caagctgcagctttccaagcaggtgcccctttcaaccaacatctgcttgcattcccagga 334

                                           
Query: 336 aatatgtcccgtccccgtcttccaattctgcc 367
             |||| |||| || |||||||||||||||||
Sbjct: 335 gctatggcccgccctcgtcttccaattctgcc 366



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 501 cctggttcaatgcctatgcaggtggcacctctccca-ggcctcagacactaccacctcca 559
           |||||||| ||||| |||||| |||| || |||||| ||||||  || ||||| ||||||
Sbjct: 557 cctggttccatgccaatgcagatggccccactcccaaggcctccaacgctaccgcctcca 616

                  
Query: 560 acatctg 566
           |||||||
Sbjct: 617 acatctg 623



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 453 gctccaggttatcctggtgctcca 476
           |||||||||||||||||| |||||
Sbjct: 446 gctccaggttatcctggtcctcca 469
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  167 bits (84), Expect = 5e-38
 Identities = 159/184 (86%)
 Strand = Plus / Minus

                                                                           
Query: 190     aggcaaatgttcgtaactactatcagcaattcgaggagcagcaaactcaaagtttgattg 249
               ||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 9507534 aggcaaatgttcgaacctactatcaacaatttgaggagcagcaaactcaaagcttgattg 9507475

                                                                           
Query: 250     atcaaaggatcaaggaacacctaggacaagccgcagcgttccaagttggcgctcctttca 309
               ||||||| || || ||||| || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 9507474 atcaaagaattaaagaacatcttggacaagctgcagctttccaagttggtgctcctttca 9507415

                                                                           
Query: 310     accaacatcttcttcaatatccaggaaatatgtcccgtccccgtcttccaattctgccca 369
               | |||||||||||   || |||||||  | || | ||||| ||||||||||||||||| |
Sbjct: 9507414 atcaacatcttctctcatttccaggaggtgtgcctcgtcctcgtcttccaattctgccaa 9507355

                   
Query: 370     cacc 373
               ||||
Sbjct: 9507354 cacc 9507351



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                           
Query: 501     cctggttcaatgcctatgcaggtggcacctctccc-aggcctcagacactaccacctcca 559
               |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 9505572 cctggttctatgcctatgcagatggcacctctcccaaggcctccgacactaccacctcca 9505513

                      
Query: 560     acatctg 566
               |||||||
Sbjct: 9505512 acatctg 9505506



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 106     ggtattattgcgattactgcgacacttatctgacccatgactc 148
               |||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 9508459 ggtactattgcgactactgcgacacctacctgacccatgactc 9508417



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                           
Query: 149     gccatctgtccgtaagcaacacaatgctggatataaacacaagg 192
               ||||||||||||||| || ||||||||||| || ||||| ||||
Sbjct: 9507691 gccatctgtccgtaaacagcacaatgctgggtacaaacataagg 9507648



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 457     caggttatcctggtgctccaa 477
               |||||||||||||||||||||
Sbjct: 9505655 caggttatcctggtgctccaa 9505635
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>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0006C08
          Length = 151987

 Score =  167 bits (84), Expect = 5e-38
 Identities = 159/184 (86%)
 Strand = Plus / Minus

                                                                          
Query: 190    aggcaaatgttcgtaactactatcagcaattcgaggagcagcaaactcaaagtttgattg 249
              ||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 121095 aggcaaatgttcgaacctactatcaacaatttgaggagcagcaaactcaaagcttgattg 121036

                                                                          
Query: 250    atcaaaggatcaaggaacacctaggacaagccgcagcgttccaagttggcgctcctttca 309
              ||||||| || || ||||| || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 121035 atcaaagaattaaagaacatcttggacaagctgcagctttccaagttggtgctcctttca 120976

                                                                          
Query: 310    accaacatcttcttcaatatccaggaaatatgtcccgtccccgtcttccaattctgccca 369
              | |||||||||||   || |||||||  | || | ||||| ||||||||||||||||| |
Sbjct: 120975 atcaacatcttctctcatttccaggaggtgtgcctcgtcctcgtcttccaattctgccaa 120916

                  
Query: 370    cacc 373
              ||||
Sbjct: 120915 cacc 120912



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                          
Query: 501    cctggttcaatgcctatgcaggtggcacctctccc-aggcctcagacactaccacctcca 559
              |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 119133 cctggttctatgcctatgcagatggcacctctcccaaggcctccgacactaccacctcca 119074

                     
Query: 560    acatctg 566
              |||||||
Sbjct: 119073 acatctg 119067



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 106    ggtattattgcgattactgcgacacttatctgacccatgactc 148
              |||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 122020 ggtactattgcgactactgcgacacctacctgacccatgactc 121978



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 149    gccatctgtccgtaagcaacacaatgctggatataaacacaagg 192
              ||||||||||||||| || ||||||||||| || ||||| ||||
Sbjct: 121252 gccatctgtccgtaaacagcacaatgctgggtacaaacataagg 121209



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 457    caggttatcctggtgctccaa 477
              |||||||||||||||||||||
Sbjct: 119216 caggttatcctggtgctccaa 119196
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>ref|NM_116546.1| Arabidopsis thaliana nucleic acid binding / rhodopsin-like
           receptor/ zinc ion binding AT4G03120 mRNA, complete cds
          Length = 902

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 141/172 (81%)
 Strand = Plus / Plus

                                                                       
Query: 97  cgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccatctg 156
           |||||||  ||||||| || ||||| ||||| |||||||| || || || || ||||| |
Sbjct: 82  cgatgccgaggtattactgtgattattgcgatacttatctcactcacgattccccatcag 141

                                                                       
Query: 157 tccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatcagc 216
           |  | ||||| ||||||||||| || ||||||||||| |||||  | |  ||||||||||
Sbjct: 142 taaggaagcagcacaatgctggttacaaacacaaggcgaatgtgagaatatactatcagc 201

                                                               
Query: 217 aattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaaca 268
           |||| ||||| || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 202 aatttgaggaacaacaaacccaaagtttgattgatcagagaattaaggaaca 253
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>dbj|AK221730.1| Arabidopsis thaliana mRNA for putative C-type U1 snRNP, complete
           cds, clone: RAFL19-55-C07
          Length = 1125

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 141/172 (81%)
 Strand = Plus / Plus

                                                                       
Query: 97  cgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccatctg 156
           |||||||  ||||||| || ||||| ||||| |||||||| || || || || ||||| |
Sbjct: 81  cgatgccgaggtattactgtgattattgcgatacttatctcactcacgattccccatcag 140

                                                                       
Query: 157 tccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatcagc 216
           |  | ||||| ||||||||||| || ||||||||||| |||||  | |  ||||||||||
Sbjct: 141 taaggaagcagcacaatgctggttacaaacacaaggcgaatgtgagaatatactatcagc 200

                                                               
Query: 217 aattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaaca 268
           |||| ||||| || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 201 aatttgaggaacaacaaacccaaagtttgattgatcagagaattaaggaaca 252
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>gb|BT004807.1| Arabidopsis thaliana At4g03120 gene, complete cds
          Length = 624

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 133/163 (81%)
 Strand = Plus / Plus

                                                                       
Query: 106 ggtattattgcgattactgcgacacttatctgacccatgactcgccatctgtccgtaagc 165
           ||||||| || ||||| ||||| |||||||| || || || || ||||| ||  | ||||
Sbjct: 8   ggtattactgtgattattgcgatacttatctcactcacgattccccatcagtaaggaagc 67

                                                                       
Query: 166 aacacaatgctggatataaacacaaggcaaatgttcgtaactactatcagcaattcgagg 225
           | ||||||||||| || ||||||||||| |||||  | |  ||| |||||||||| ||||
Sbjct: 68  agcacaatgctggttacaaacacaaggcgaatgtgagaatataccatcagcaatttgagg 127

                                                      
Query: 226 agcagcaaactcaaagtttgattgatcaaaggatcaaggaaca 268
           | || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 128 aacaacaaacccaaagtttgattgatcagagaattaaggaaca 170
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>gb|AY089040.1| Arabidopsis thaliana clone 20753 mRNA, complete sequence
          Length = 900

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 139/172 (80%), Gaps = 2/172 (1%)
 Strand = Plus / Plus

                                                                       
Query: 97  cgatgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccatctg 156
           |||||||  ||||||| || ||||| ||||| |||||||| || || || || ||||| |
Sbjct: 82  cgatgccgaggtattactgtgattattgcgatacttatctcactcacgattccccatcag 141

                                                                       
Query: 157 tccgtaagcaacacaatgctggatataaacacaaggcaaatgttcgtaactactatcagc 216
           |  | ||||| ||||||||||| || ||||||||||| |||||  | |  |||||||  |
Sbjct: 142 taaggaagcagcacaatgctggttacaaacacaaggcgaatgtgagaatatactatc--c 199

                                                               
Query: 217 aattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaaca 268
           |||| ||||| || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 200 aatttgaggaacaacaaacccaaagtttgattgatcagagaattaaggaaca 251
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>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM,
             complete sequence
          Length = 136335

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 207   tactatcagcaattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaa 266
             |||||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||
Sbjct: 19228 tactatcagcaatttgaggaacaacaaacccaaagtttgattgatcagagaattaaggaa 19287

               
Query: 267   ca 268
             ||
Sbjct: 19288 ca 19289
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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 207   tactatcagcaattcgaggagcagcaaactcaaagtttgattgatcaaaggatcaaggaa 266
             |||||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||
Sbjct: 37600 tactatcagcaatttgaggaacaacaaacccaaagtttgattgatcagagaattaaggaa 37659

               
Query: 267   ca 268
             ||
Sbjct: 37660 ca 37661
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>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence
          Length = 101563

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 207   tactatcagcaattcgaggagcagcaaactcaaagtttgattgatcaaaggat 259
             |||||||||||||| ||||| |||||||| |||||| |||||||||| |||||
Sbjct: 56817 tactatcagcaatttgaggaacagcaaacgcaaagtctgattgatcagaggat 56869



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 106   ggtattattgcgattactgcgacacttatctgacccatgactc 148
             ||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 56340 ggtattactgtgattattgcgacacttatctcacccacgactc 56382
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>gb|U52002.2| Caenorhabditis elegans cosmid F08B4, complete sequence
          Length = 36325

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 111   tattgcgattactgcgacacttatctgacccatgactcgccatc 154
             ||||| |||||||||||||| | | |||| ||||||||||||||
Sbjct: 27656 tattgtgattactgcgacacatttttgacacatgactcgccatc 27613
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>ref|XM_532115.2| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein C (U1 snRNP protein C) (U1C protein)
           (U1-C) (LOC608109), mRNA
          Length = 973

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || ||||||||||| || || ||||||||||| ||||||||
Sbjct: 279 ttattgtgactactgcgacacatacctcacccatgactctccatctgt 326
to top
>dbj|AB211519.1| Lycopersicon esculentum mRNA for similar to u1 small nuclear
           ribonucleoprotein C, complete cds, clone:FC01AC10
          Length = 963

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                       
Query: 99  atgcctcggtattattgcgattactgcgacacttatctgacccatgactcgccatctgtc 158
           |||||||||||||| || || ||||| || |||||  |||| ||||| || || ||||| 
Sbjct: 99  atgcctcggtattactgtgactactgtgatacttacttgacacatgattctccttctgtt 158

                                                       
Query: 159 cgtaagcaacacaatgctggatataaacacaaggcaaatgttcg 202
            | ||||| || ||||| || || |||||||||| |||||||||
Sbjct: 159 agaaagcagcataatgcagggtacaaacacaagggaaatgttcg 202
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>ref|NM_069089.3| Caenorhabditis elegans F08B4.7 (F08B4.7) mRNA, complete cds
          Length = 635

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 111 tattgcgattactgcgacacttatctgacccatgactcgccatc 154
           ||||| |||||||||||||| | | |||| ||||||||||||||
Sbjct: 19  tattgtgattactgcgacacatttttgacacatgactcgccatc 62
to top
>gb|AY099526.1| Danio rerio U1 small nuclear ribonucleoprotein C (snrpc) mRNA,
           complete cds
          Length = 773

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgcc 151
           ||||||||||||||| ||||| || ||||| ||||| |||||
Sbjct: 56  ttattgcgattactgtgacacatacctgacacatgattcgcc 97
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>ref|NM_173251.2| Danio rerio small nuclear ribonucleoprotein polypeptide C (snrpc),
           mRNA
          Length = 908

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgcc 151
           ||||||||||||||| ||||| || ||||| ||||| |||||
Sbjct: 54  ttattgcgattactgtgacacatacctgacacatgattcgcc 95
to top
>gb|BC091442.1| Danio rerio small nuclear ribonucleoprotein polypeptide C, mRNA
           (cDNA clone MGC:109792 IMAGE:7292940), complete cds
          Length = 908

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgcc 151
           ||||||||||||||| ||||| || ||||| ||||| |||||
Sbjct: 54  ttattgcgattactgtgacacatacctgacacatgattcgcc 95
to top
>gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 222828

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 354  cttccaattctgcccacaccc 374
            |||||||||||||||||||||
Sbjct: 5593 cttccaattctgcccacaccc 5613
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>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   cttccaattctgcccacaccc 374
             |||||||||||||||||||||
Sbjct: 31637 cttccaattctgcccacaccc 31617
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>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence
          Length = 175070

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 524    ggcacctctcccaggcctcag 544
              |||||||||||||||||||||
Sbjct: 106688 ggcacctctcccaggcctcag 106708
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>gb|AC104465.4| Homo sapiens chromosome 1 clone RP5-1051D14, complete sequence
          Length = 144786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 235    ctcaaagtttgattgatcaaaggat 259
              |||||||||||| ||||||||||||
Sbjct: 127247 ctcaaagtttgactgatcaaaggat 127271
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>gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome 5, complete sequence
          Length = 234206

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 524   ggcacctctcccaggcctcag 544
             |||||||||||||||||||||
Sbjct: 43275 ggcacctctcccaggcctcag 43295
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>emb|AL109934.22|HSDJ81L22 Human DNA sequence from clone RP1-81L22 on chromosome 6, complete
             sequence
          Length = 95347

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   tcttcaatatccaggaaatat 340
             |||||||||||||||||||||
Sbjct: 19138 tcttcaatatccaggaaatat 19118
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>ref|XM_784104.1| PREDICTED: Strongylocentrotus purpuratus similar to U1 small
           nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
           protein) (U1-C) (LOC584236), mRNA
          Length = 468

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 105 cggtattattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           ||||| ||||| || || || ||||| ||||| || |||||||||||||||||
Sbjct: 34  cggtactattgtgactattgtgacacatatctcacgcatgactcgccatctgt 86
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>ref|NM_142510.1| Drosophila melanogaster CG5454-RA (CG5454), mRNA
          Length = 693

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 111 tattgcgattactgcgacacttatctgacccatgactcgcc 151
           |||||||| ||||||||||| ||  ||||||| ||||||||
Sbjct: 121 tattgcgactactgcgacacctacttgacccacgactcgcc 161
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>ref|NM_137311.2| Drosophila melanogaster unc-104 CG8566-RD (unc-104), mRNA
          Length = 7388

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcagcaattcgaggagcagc 231
            |||||||||||||||||||||
Sbjct: 2358 atcagcaattcgaggagcagc 2378
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>gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53E-54X, BAC clone
             BACR03E17, complete sequence
          Length = 160338

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcagcaattcgaggagcagc 231
             |||||||||||||||||||||
Sbjct: 13700 atcagcaattcgaggagcagc 13680
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>gb|AC007891.8|AC007891 Drosophila melanogaster, chromosome 3R, region 91E-91E, BAC clone
             BACR07D13, complete sequence
          Length = 153048

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 111   tattgcgattactgcgacacttatctgacccatgactcgcc 151
             |||||||| ||||||||||| ||  ||||||| ||||||||
Sbjct: 64970 tattgcgactactgcgacacctacttgacccacgactcgcc 64930
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>gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome 3R, region 91D-91E, BAC clone
              BACR44N12, complete sequence
          Length = 204173

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 111    tattgcgattactgcgacacttatctgacccatgactcgcc 151
              |||||||| ||||||||||| ||  ||||||| ||||||||
Sbjct: 142378 tattgcgactactgcgacacctacttgacccacgactcgcc 142338
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>gb|BT003460.1| Drosophila melanogaster RH29440 full insert cDNA
          Length = 703

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 111 tattgcgattactgcgacacttatctgacccatgactcgcc 151
           |||||||| ||||||||||| ||  ||||||| ||||||||
Sbjct: 122 tattgcgactactgcgacacctacttgacccacgactcgcc 162
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>gb|AF247761.1|AF247761 Drosophila melanogaster kinesin superfamily member DUnc104 mRNA,
            complete cds
          Length = 7401

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcagcaattcgaggagcagc 231
            |||||||||||||||||||||
Sbjct: 2361 atcagcaattcgaggagcagc 2381
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>gb|AE003724.3| Drosophila melanogaster chromosome 3R, section 62 of 118 of the complete
              sequence
          Length = 232330

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 111    tattgcgattactgcgacacttatctgacccatgactcgcc 151
              |||||||| ||||||||||| ||  ||||||| ||||||||
Sbjct: 121471 tattgcgactactgcgacacctacttgacccacgactcgcc 121431
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>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
             sequence
          Length = 272948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcagcaattcgaggagcagc 231
             |||||||||||||||||||||
Sbjct: 27548 atcagcaattcgaggagcagc 27528
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>gb|AC004341.1|AC004341 Drosophila melanogaster DNA sequence (P1 DS02473 (D239)), complete
             sequence
          Length = 61964

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcagcaattcgaggagcagc 231
             |||||||||||||||||||||
Sbjct: 18443 atcagcaattcgaggagcagc 18423
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>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence
          Length = 171447

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   acactaccacctccaacatc 564
             ||||||||||||||||||||
Sbjct: 88475 acactaccacctccaacatc 88494
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    aagtttgattgatcaaagga 258
              ||||||||||||||||||||
Sbjct: 270859 aagtttgattgatcaaagga 270878
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>gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8, complete sequence
          Length = 154240

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   aagtttgattgatcaaagga 258
             ||||||||||||||||||||
Sbjct: 64006 aagtttgattgatcaaagga 64025
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>ref|XM_872762.1| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           C (U1 snRNP protein C) (U1C protein) (U1-C), transcript
           variant 2 (LOC614553), mRNA
          Length = 704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || ||||||||||| || || |||||||| || ||||||||
Sbjct: 38  ttattgtgactactgcgacacatacctcacccatgattctccatctgt 85
to top
>ref|XM_864260.1| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           C (U1 snRNP protein C) (U1C protein) (U1-C), transcript
           variant 1 (LOC614553), mRNA
          Length = 781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || ||||||||||| || || |||||||| || ||||||||
Sbjct: 38  ttattgtgactactgcgacacatacctcacccatgattctccatctgt 85
to top
>gb|BC014445.1| Homo sapiens EH-domain containing 2, mRNA (cDNA clone MGC:22994
            IMAGE:4908085), complete cds
          Length = 3517

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 2463 ccaattctgcccacacccat 2482
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>ref|NM_014601.2| Homo sapiens EH-domain containing 2 (EHD2), mRNA
          Length = 3517

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 2463 ccaattctgcccacacccat 2482
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>ref|XM_538895.2| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein C (U1 snRNP protein C) (U1C protein)
           (U1-C) (LOC481774), mRNA
          Length = 730

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || ||||| ||||| || || ||||||||||| ||||||||
Sbjct: 42  ttattgtgactactgtgacacatacctcacccatgactctccatctgt 89
to top
>gb|BC062554.1| Homo sapiens EH-domain containing 2, mRNA (cDNA clone IMAGE:6455420),
            partial cds
          Length = 3823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 2743 ccaattctgcccacacccat 2762
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>gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome 16, complete sequence
          Length = 226724

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   catcttcttcaatatccagg 334
             ||||||||||||||||||||
Sbjct: 35290 catcttcttcaatatccagg 35271
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>gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosome 18, complete
             sequence
          Length = 175583

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   acactaccacctccaacatc 564
             ||||||||||||||||||||
Sbjct: 50079 acactaccacctccaacatc 50060
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>ref|NM_003093.1| Homo sapiens small nuclear ribonucleoprotein polypeptide C (SNRPC),
           mRNA
          Length = 733

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 27  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 74
to top
>emb|AL356261.23| Human DNA sequence from clone RP11-49J3 on chromosome 1 Contains part
             of the  NPHP4 gene for nephronophthisis 4, complete
             sequence
          Length = 100302

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   gaggagcagcaaactcaaag 241
             ||||||||||||||||||||
Sbjct: 95950 gaggagcagcaaactcaaag 95969
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>emb|BX537773.1|HSM805859 Homo sapiens genomic DNA; cDNA DKFZp686J11166 (from clone
            DKFZp686J11166)
          Length = 5525

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  cccgtcttccaattctgccc 368
            ||||||||||||||||||||
Sbjct: 2968 cccgtcttccaattctgccc 2987
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>gb|AC008745.7| Homo sapiens chromosome 19 clone CTD-2571L23, complete sequence
          Length = 180531

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   ccaattctgcccacacccat 376
             ||||||||||||||||||||
Sbjct: 22315 ccaattctgcccacacccat 22334
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>emb|CR625497.1| full-length cDNA clone CS0DI015YO22 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 718

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 26  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 73
to top
>dbj|AK097228.1| Homo sapiens cDNA FLJ39909 fis, clone SPLEN2017918, highly similar to
            Homo sapiens EH domain containing 2 (EHD2) mRNA
          Length = 2907

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 1871 ccaattctgcccacacccat 1890
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>dbj|AK097126.1| Homo sapiens cDNA FLJ39807 fis, clone SPLEN2008496, highly similar to
            Homo sapiens EH domain containing 2 (EHD2) mRNA
          Length = 2914

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 1878 ccaattctgcccacacccat 1897
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>emb|CR609202.1| full-length cDNA clone CS0DB002YO03 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1238

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 ccaattctgcccacacccat 376
           ||||||||||||||||||||
Sbjct: 237 ccaattctgcccacacccat 256
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>emb|CR607936.1| full-length cDNA clone CS0DK008YB14 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1323

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 ccaattctgcccacacccat 376
           ||||||||||||||||||||
Sbjct: 290 ccaattctgcccacacccat 309
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>emb|CR603118.1| full-length cDNA clone CS0DC024YD01 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 723

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 31  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 78
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>dbj|AK074701.1| Homo sapiens cDNA FLJ90220 fis, clone MAMMA1003126, moderately
            similar to Human Hpast (HPAST) mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 1582 ccaattctgcccacacccat 1601
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>gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135060

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ctcctattttaccagttcct 449
             ||||||||||||||||||||
Sbjct: 15284 ctcctattttaccagttcct 15303
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>gb|AF454952.1|AF454952 Homo sapiens EH domain-containing protein-2 mRNA, complete cds
          Length = 3409

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccaattctgcccacacccat 376
            ||||||||||||||||||||
Sbjct: 2352 ccaattctgcccacacccat 2371
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>gb|AC151733.5| Mus musculus BAC clone RP23-89N20 from chromosome 7, complete sequence
          Length = 204775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    tgcaggtggcacctctccca 536
              ||||||||||||||||||||
Sbjct: 146900 tgcaggtggcacctctccca 146919
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>dbj|AB179001.1| Macaca fascicularis testis cDNA clone: QtsA-11260, similar to human
           FK506 binding protein like (FKBPL), mRNA, RefSeq:
           NM_022110.3
          Length = 755

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 17  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 64
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>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete
              sequence
          Length = 202920

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    actaccacctccaacatctg 566
              ||||||||||||||||||||
Sbjct: 190021 actaccacctccaacatctg 190040
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>gb|BC066555.1| Danio rerio membrane-associated ring finger (C3HC4) 5, like, mRNA
           (cDNA clone MGC:77134 IMAGE:6961058), complete cds
          Length = 1441

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 caacctggtgggccgtttgc 424
           ||||||||||||||||||||
Sbjct: 782 caacctggtgggccgtttgc 801
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>gb|BC049066.1| Danio rerio membrane-associated ring finger (C3HC4) 5, like, mRNA
           (cDNA clone MGC:56713 IMAGE:6034398), complete cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 caacctggtgggccgtttgc 424
           ||||||||||||||||||||
Sbjct: 566 caacctggtgggccgtttgc 585
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>ref|NM_199739.2| Danio rerio membrane-associated ring finger (C3HC4) 5, like
           (march5l), mRNA
          Length = 1441

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 caacctggtgggccgtttgc 424
           ||||||||||||||||||||
Sbjct: 782 caacctggtgggccgtttgc 801
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>gb|AC009140.6|AC009140 Homo sapiens chromosome 16 clone RP11-53K15, complete sequence
          Length = 139173

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   cccgtcttccaattctgccc 368
             ||||||||||||||||||||
Sbjct: 82043 cccgtcttccaattctgccc 82024
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>dbj|AK223098.1| Homo sapiens mRNA for small nuclear ribonucleoprotein polypeptide C
           variant, clone: KAT04768
          Length = 752

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 36  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 83
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>gb|AC000015.2| Homo sapiens chromosome 12 clone B271E1, complete sequence
          Length = 66704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ctcctattttaccagttcct 449
             ||||||||||||||||||||
Sbjct: 34826 ctcctattttaccagttcct 34845
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>gb|AC138304.1| Homo sapiens chromosome 16 clone CTD-2588J6, complete sequence
          Length = 183002

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cccgtcttccaattctgccc 368
             ||||||||||||||||||||
Sbjct: 78827 cccgtcttccaattctgccc 78846
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>dbj|AK026134.1| Homo sapiens cDNA: FLJ22481 fis, clone HRC10846, highly similar to
           AF181263 Homo sapiens EH domain containing 2 (EHD2) mRNA
          Length = 1921

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 ccaattctgcccacacccat 376
           ||||||||||||||||||||
Sbjct: 865 ccaattctgcccacacccat 884
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>gb|AY610382.1| Sus scrofa clone rese17c_a21.y1.abd, mRNA sequence
          Length = 582

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 20  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 67
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>emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 in linkage group 22,
              complete sequence
          Length = 144027

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    caacctggtgggccgtttgc 424
              ||||||||||||||||||||
Sbjct: 134442 caacctggtgggccgtttgc 134461
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>emb|X12517.1|HSU1RNPC Human mRNA for U1 small nuclear RNP-specific C protein
          Length = 733

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 110 ttattgcgattactgcgacacttatctgacccatgactcgccatctgt 157
           |||||| || |||||||| || || || ||||||||||| ||||||||
Sbjct: 27  ttattgtgactactgcgatacatacctcacccatgactctccatctgt 74


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,186,853
Number of Sequences: 3902068
Number of extensions: 4186853
Number of successful extensions: 79818
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79649
Number of HSP's gapped (non-prelim): 157
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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