>CWC15_SCHPO (P78794) Pre-mRNA-splicing factor cwc15 (Complexed with cdc5|
           protein 15) (Cell cycle control protein cwf15)
          Length = 265

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
 Frame = +1

Query: 409 LAQSFT-PSTDQKPNNYIE--RQLLMGGFVEVQASATSSQDSVQS------VTIKAKK 555
           L + FT PSTD KPNN +E   Q L+   +E    A+ S DSV S      V+IK +K
Sbjct: 83  LIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRK 140

>CPIN1_MOUSE (Q8WTY4) Anamorsin (Cytokine-induced apoptosis inhibitor 1)|
          Length = 309

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 21/98 (21%)
 Frame = +1

Query: 361 KLVAEISRVLKAGGIVLAQSFTPSTD-----QKPNNYIERQLLMGGFVEV---QASATSS 516
           +++AE++R+L+ GG +  +    + +      K  + +   L + G VE+   Q  A S 
Sbjct: 78  EVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIKELQREALSP 137

Query: 517 Q-------------DSVQSVTIKAKKPSWSMGSSFPLK 591
           +             DS++SV +  KKP++ +GSS  LK
Sbjct: 138 EEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLK 175

>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 33   PSGPAAIAVRSSDPHLPSPPSRSQGPQAVRFDPIRSRS 146
            PSG  A + RSS PH  + P +S  P   + DP R RS
Sbjct: 2796 PSG--ASSPRSSSPHDKNLPQKSTAPVKTKLDPPRERS 2831

>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3|
          Length = 760

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
 Frame = +1

Query: 274 ATLGGKLPFDDASVGSVLSVI-KNVESFGDKLVAEISRVLKAGGIVLAQSFTPSTDQKP- 447
           A L GKLP     V   LS + K VESF +  V +ISR+++   + +++SF  S++ +  
Sbjct: 211 AKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIR---LWISESFIKSSEGRSL 267

Query: 448 --------NNYIERQLLM 477
                    N I R L+M
Sbjct: 268 EDIAEGYLENLIGRNLVM 285

>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa|
           retinoblastoma-associated protein) (PRB1) (P107)
          Length = 1068

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
 Frame = +1

Query: 244 REEVVVITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKL-----------VAEISRVL 390
           RE+  VIT  A+    +    + + S+++ +KN  S  D+L           V  I ++L
Sbjct: 378 REKEAVITPVASATQSV----SRLQSIVAGLKNAPS--DQLINIFESCVRNPVENIMKIL 431

Query: 391 KAGGIVLAQSFTPSTDQKPNNYIE 462
           K  G    Q +T STD++P ++I+
Sbjct: 432 KGIGETFCQHYTQSTDEQPGSHID 455

>FLGH1_BRAJA (Q89I09) Flagellar L-ring protein 1 precursor (Basal body L-ring|
           protein 1)
          Length = 254

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 6/184 (3%)
 Frame = +1

Query: 10  NPSIHPFYHPVRPPSPSVRLTPTSPXXXXXXXXXXXFDSTRSDPVRSMXXXXXXXXXXXX 189
           NP+  P Y PV+ P P   +   +P           F   R+  +  +            
Sbjct: 49  NPTAQPGYKPVQMPMPKPEVASYNPNSLWRSGSRAFFKDQRAHQIGDLLTVTVNITDKAN 108

Query: 190 XXXXXXXXXXXXXXXGVS---REEVVVITQCATLGGKLPFDDASVGSVLSVIKNVESFGD 360
                          G++     + V        G  L  D  S       +   E+   
Sbjct: 109 IANETQRSRTAKEDSGITDFIGSQTVTQPLKVLPGRLLTTDSTSSADGKGSVNRQEALQT 168

Query: 361 KLVAEISRVLKAGGIVLAQSFTPSTDQKPNNYIERQLLMGGFV---EVQASATSSQDSVQ 531
            + A +++VL  G +V+         +   NY  R+L++ G V   ++Q+  T     + 
Sbjct: 169 NVAAVVTQVLPNGNLVV-----EGKQEIRVNYEIRELVVAGIVRPEDIQSDNTIDSSKIA 223

Query: 532 SVTI 543
              I
Sbjct: 224 QARI 227

>COQ5_DROME (Q9VYF8) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 301

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 259 VITQCATLGGKLPFDDASVGS--VLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTPS 432
           V  QCA    KLPF DAS  +  +   I+N     DK+++E  RVL+ GG  +   F+  
Sbjct: 167 VAWQCAD-AEKLPFPDASFTAYTIAFGIRNCTHV-DKVLSEAYRVLQPGGRFMCLEFSHL 224

Query: 433 TDQ 441
           T++
Sbjct: 225 TNE 227

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   RSINPSIHPFYHPVRPPSPSVRLTPTSP 84
           RS +PS+ P    VRP SPSVR    SP
Sbjct: 516 RSKSPSVRPKSPSVRPKSPSVRPRSKSP 543

>FBN1_HUMAN (P35555) Fibrillin-1 precursor|
          Length = 2871

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 552  LCLDGNRLHAILR-ACSRSLHFNKTTHE*LALDIIVWLLISGGCEALCQHNSTSFQHSAN 376
            LC +G  ++ I +  C+ +  ++ T      +DI    +++GGCE  C ++  S++ S  
Sbjct: 1165 LCPNGRCVNLIGKYQCACNPGYHSTPDRLFCVDIDECSIMNGGCETFCTNSEGSYECSCQ 1224

Query: 375  FSNQLIP 355
                L+P
Sbjct: 1225 PGFALMP 1231

>CPIN1_HUMAN (Q6FI81) Anamorsin (Cytokine-induced apoptosis inhibitor 1)|
           (CUA001)
          Length = 312

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
 Frame = +1

Query: 361 KLVAEISRVLKAGG-IVLAQSFTPSTDQ----KPNNYIERQLLMGGFVEVQASATS---- 513
           +++AEI+R+L+ GG + L +    + D     K  + +   L + G VEV+         
Sbjct: 78  EILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTP 137

Query: 514 ------------SQDSVQSVTIKAKKPSWSMGSSFPLK 591
                         D++  V I  KKP++ +GSS  LK
Sbjct: 138 EEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLK 175

>CP3A3_HUMAN (P05184) Cytochrome P450 3A3 (EC 1.14.14.1) (CYPIIIA3) (HLp)|
          Length = 503

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +3

Query: 312 RGFCSF---CHKKCGELWG 359
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72

>CP3A4_HUMAN (P08684) Cytochrome P450 3A4 (EC 1.14.13.67) (Quinine|
           3-monooxygenase) (CYPIIIA4) (Nifedipine oxidase)
           (Taurochenodeoxycholate 6-alpha-hydroxylase) (EC
           1.14.13.97) (NF-25) (P450-PCN1)
          Length = 502

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +3

Query: 312 RGFCSF---CHKKCGELWG 359
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72

>RRMA_ECOLI (P36999) Ribosomal RNA large subunit methyltransferase A (EC|
           2.1.1.51) (rRNA (guanine-N(1)-)-methyltransferase) (23S
           rRNA m1G745 methyltransferase)
          Length = 269

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 262 ITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTP 429
           +T C     +LPF D S+ +++ +      +      E++RV+K GG V+  +  P
Sbjct: 132 VTFCVASSHRLPFSDTSMDAIIRI------YAPCKAEELARVVKPGGWVITATPGP 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,788,487
Number of Sequences: 219361
Number of extensions: 1410533
Number of successful extensions: 3856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3846
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)