ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart33c12 |
|---|---|
| Clone Library Name | barley_pub |
>NDUA5_ARATH (Q9FLX7) Probable NADH-ubiquinone oxidoreductase 18 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18Kd) (CI-18Kd) Length = 169 Score = 221 bits (562), Expect = 1e-57 Identities = 103/126 (81%), Positives = 115/126 (91%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEED 311 VK+TTGIVGLDVVP AR VLI LY++TLKEI+AVP+DEGYRKAVESFTR RL +C+EEED Sbjct: 14 VKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEED 73 Query: 312 WKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTPIPKHVPQH 491 W+ IE RLGCG+VEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVIE++ PIPKHVPQH Sbjct: 74 WEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVIENDAPIPKHVPQH 133 Query: 492 RPVALP 509 RP LP Sbjct: 134 RPGPLP 139
>NDUA5_BOVIN (P23935) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 84.3 bits (207), Expect = 2e-16 Identities = 41/96 (42%), Positives = 62/96 (64%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEED 311 +K+TTG+VGL V + L LYT+ L + +PK+ YRK E T +L + + E D Sbjct: 4 LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 63 Query: 312 WKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 K++E+RL G++EE+I +A++EL L KMI+W PW Sbjct: 64 VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 99
>NDUA5_RAT (Q63362) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 80.1 bits (196), Expect = 3e-15 Identities = 41/96 (42%), Positives = 59/96 (61%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEED 311 VK+TTG+VGL V + L LYT+ L ++ PK YRK E T +L++ + E D Sbjct: 4 VKKTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPD 63 Query: 312 WKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 K++E+ L G VEE+I +A+ EL L KM++W PW Sbjct: 64 VKKLENLLQGGEVEEVILQAEKELSLARKMLQWKPW 99
>NDUA5_MOUSE (Q9CPP6) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 79.7 bits (195), Expect = 4e-15 Identities = 41/96 (42%), Positives = 58/96 (60%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEED 311 +K+TTG+VGL V + L LYT+TL ++ PK YRK E T +L + + E D Sbjct: 4 LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 63 Query: 312 WKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 K++E L G VEE+I +A+ EL L KM++W PW Sbjct: 64 VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 99
>NDUA5_HUMAN (Q16718) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 79.7 bits (195), Expect = 4e-15 Identities = 41/96 (42%), Positives = 60/96 (62%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEED 311 +K+TTG+VGL V + L LYT+ L +E +PK+ YRK E T +L + + E D Sbjct: 4 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 63 Query: 312 WKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 K++ED+L G++EE+I +A+ EL L KM EW W Sbjct: 64 VKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 99
>NDUA5_CAEEL (Q18359) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.3 kDa subunit) Length = 150 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 3/97 (3%) Frame = +3 Query: 135 KETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEEDW 314 K+TTGI GL V L +Y R L+ +E +P+D YRK E+ + RL + Q E D Sbjct: 40 KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99 Query: 315 KRIEDRLGCGRVEELIEEAQDELKLIGKMIE---WDP 416 K++E+++G G++EE+IE+A+ EL+ +++ W+P Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAWEP 136
>NDUA5_SOLTU (P80266) NADH-ubiquinone oxidoreductase 22.5 kDa subunit (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I-22.5Kd) (CI-22.5Kd) (Fragment) Length = 37 Score = 55.5 bits (132), Expect = 8e-08 Identities = 27/35 (77%), Positives = 31/35 (88%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVP 236 VKETTGIVGL VVP AR+VLI LY +TL+EI+AVP Sbjct: 3 VKETTGIVGLXVVPNAREVLINLYRKTLEEIKAVP 37
>NDUA5_NEUCR (P24919) NADH-ubiquinone oxidoreductase 29.9 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-29.9KD) (CI-29.9KD) Length = 273 Score = 47.4 bits (111), Expect = 2e-05 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = +3 Query: 144 TGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQE 302 TG+ GL P R L+ LY TL +++ +P+ YR++ E+ T+HRL I ++ Sbjct: 28 TGLTGLGTHPSPRSALLYLYNHTLDKLKQIPEHSLYRQSAEALTKHRLAIVEQ 80 Score = 35.8 bits (81), Expect = 0.069 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +3 Query: 306 EDWKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNTP 467 E +E R+G G +EE+++ A+ ELKL+ M + PW E +E+ P Sbjct: 217 EQIAEMEARIGSGLIEEVVQVAEGELKLVDIMTQARPW--------EALEEEAP 262
>PRP1_SCHPO (Q12381) Pre-mRNA-splicing factor prp1| Length = 906 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = +3 Query: 228 AVPKDEGYRKAVESFTRHRLQICQEEEDW---KRIEDRLG-CGRVEELIEEAQDELKLIG 395 A+ + E Y A + + R I E W R+E++ G RVE+++ EL+ G Sbjct: 409 ALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATG 468 Query: 396 KMIEWDPWGVPDDYECE 446 M++ D W + + +CE Sbjct: 469 GMLQRDQW-LSEAEKCE 484
>Y2462_DEIRA (Q9RRM6) UPF0144 protein DR2462| Length = 572 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Frame = +3 Query: 138 ETTGIVGLDVVPEARDV----LIGLYTRTLKEIEAVP------KDEGYRKAVESFTRHRL 287 ET+ + + VVP D LIG R ++ E++ D + SF R Sbjct: 256 ETSAQLSVSVVPIPSDAMKGRLIGREGRNIRAFESLTGVDLIIDDTPEAVILSSFNPLRR 315 Query: 288 QICQEEEDWKRIEDRLGCGRVEELIEEAQDELK 386 ++ + D + R+ R+EE++ +AQD++K Sbjct: 316 EVARHVLDALVADGRIHPTRIEEMVHKAQDDMK 348
>NCKP1_ARATH (Q5S2C4) Protein NAP1 (Nck-associated protein 1) (AtNAP1)| (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) Length = 1425 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +3 Query: 141 TTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEEDWKR 320 T GIV LD+ P L GL+ R ++ +E++PK +G E+ + + +DW Sbjct: 569 TPGIVALDLDP----TLKGLFQRIVQHLESIPKAQG-----ENVSAITCDLSDFRKDWLS 619 Query: 321 I 323 I Sbjct: 620 I 620
>KAD7_MACFA (Q95JP6) Putative adenylate kinase 7 (EC 2.7.4.3) (Fragment)| Length = 533 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 303 EEDWKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 EE+ K E+RL EE E Q+ +++ K+ W+ W Sbjct: 430 EEERKAAEERLAREAAEEAEREHQEAVEMAEKIARWEEW 468
>KAD7_HUMAN (Q96M32) Putative adenylate kinase 7 (EC 2.7.4.3)| Length = 723 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 303 EEDWKRIEDRLGCGRVEELIEEAQDELKLIGKMIEWDPW 419 EE+ K E+RL EE E Q+ +++ K+ W+ W Sbjct: 620 EEERKAAEERLAREAAEEAEREHQEAVEMAEKIARWEEW 658
>HISZ_BACSU (O34459) ATP phosphoribosyltransferase regulatory subunit| Length = 391 Score = 30.0 bits (66), Expect = 3.8 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = +3 Query: 246 GYRKAVESFTRHRLQICQEEEDWKRIEDRLG---CGRVEELIEEAQ-----DELKLIGKM 401 GYR+ V+S L + + +E R G CGR EE+++ AQ DELK + Sbjct: 193 GYREHVKSLP---LSSIDKSRLLELLELRGGIEVCGRAEEIVDSAQGKSVVDELKAL--- 246 Query: 402 IEWDPWGVPDDYEC 443 W + +DY C Sbjct: 247 -----WDILEDYGC 255
>ASSY_METKA (Q8TWU0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 394 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +3 Query: 132 VKETTGIVGLDVVPEARDVLIGLYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQE--- 302 + ET G G+ + D +IGL +R + E A +A+E+FT R ++ + Sbjct: 242 LNETAGEHGVGRIDIIEDRVIGLKSREVYEAPAAVTLLEAHRALEAFTLTRRELSLKASL 301 Query: 303 EEDWKRI 323 EE+W R+ Sbjct: 302 EEEWARL 308
>YDIU_SHIFL (Q83L33) UPF0061 protein ydiU| Length = 478 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%) Frame = +3 Query: 243 EGYRKAVESFTRHRLQICQEEEDWKRIEDRLGCGRVEELIEEAQ-----------DELKL 389 E R+ + RH +++ED R+ R LI + Q D + L Sbjct: 191 EKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAHGVMNTDNMSL 250 Query: 390 IGKMIEWDPWGVPDDYE 440 +G +++ P+G DDYE Sbjct: 251 LGLTLDYGPFGFLDDYE 267
>YDIU_ECOL6 (Q8FH30) UPF0061 protein ydiU| Length = 478 Score = 28.9 bits (63), Expect = 8.5 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Frame = +3 Query: 243 EGYRKAVESFTRHRLQICQEEEDWKRIEDRLGCGRVEELIEEAQ-----------DELKL 389 E R+ + RH +EED R+ R LI + Q D + L Sbjct: 191 EKVRQLADFAIRHYWSHLDDEEDKYRLWFTDVVARTASLIAQWQTVGFAHGVMNTDNMSL 250 Query: 390 IGKMIEWDPWGVPDDYE 440 +G +++ P+G DDYE Sbjct: 251 LGLTLDYGPFGFLDDYE 267
>EXOS9_MOUSE (Q9JHI7) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Exosome| component 9) (Polymyositis/scleroderma autoantigen 1) (Autoantigen PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa) (PM/Scl-75) (P75 polymyositis-scleroderma overlap syn Length = 438 Score = 28.9 bits (63), Expect = 8.5 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Frame = +3 Query: 198 LYTRTLKEIEAVPKDEGYRKAVESFTRHRLQICQEEE---DWKRIEDRLGCGRVEELIEE 368 L + L+ + V K+ G ES R+ + E D IE+R EE+I E Sbjct: 264 LIQKALENDQRVRKEGGKFGFAESIANQRITAFKMETAPIDTSNIEER-----AEEIIAE 318 Query: 369 AQDELKLIGKMIEWDP------------WGVPDDYECEVIEDNTPIPKHV 482 A+ +++ + + W P WG +D E E E+ I + V Sbjct: 319 AEPPPEVVSQPVLWTPGTAQIGDGIENSWGDLEDSEKEEEEEEGGIDEAV 368
>DACA_BACSU (P08750) D-alanyl-D-alanine carboxypeptidase precursor (EC| 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (CPase) (PBP5) Length = 443 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 351 EELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIEDNT 464 E L+ EA D+ K ++WD PDDY E+ +DN+ Sbjct: 74 EYLLLEAIDQGK-----VKWDQTYTPDDYVYEISQDNS 106
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 279 HRLQICQEEEDWKRIEDRLGCGRVEELIEEAQDELKLIGKMIEW 410 H+ +C+EEE+ R+E CGR + A + K + M+E+ Sbjct: 4848 HKRTVCKEEEEAIRVELHESCGRTKLFWLLALADSKTLKAMVEF 4891
>DDAH1_RAT (O08557) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +3 Query: 363 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHR 494 E AQ LK++ +M + +D VPDD I N P HV HR Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHR 236
>DDAH1_MOUSE (Q9CWS0) NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC| 3.5.3.18) (Dimethylargininase-1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI) (DDAH-1) Length = 284 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +3 Query: 363 EEAQDELKLIGKMIE--WDPWGVPDDYECEVIEDNTPIPKHVPQHR 494 E AQ LK++ +M + +D VPDD I N P HV HR Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHR 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,091,961 Number of Sequences: 219361 Number of extensions: 680199 Number of successful extensions: 2554 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2552 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
