Clone Name | bart33c12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK068580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B08, full insert sequence Length = 873 Score = 517 bits (261), Expect = e-143 Identities = 345/373 (92%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||| ||||||| ||||| ||||||||| | |||||||| |||||| Sbjct: 160 tgaaggagacgacggggctcgtggggctggaggtggtgcccaacgcgcgggaggtgctcg 219 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 220 tcggcctctacacccgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 279 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 280 gcaaggccgtcgagtccttcacccgccaccgcctccagatctgccaggaggaggacgact 339 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 |||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||| Sbjct: 340 ggaagcgcatcgaggaccgcatcggctgcggccaggtcgaggagctcatcgaggaggccc 399 Query: 373 aggacgagctcaagctcatcggcaagatgatcgagtgggatccctggggtgttcctgatg 432 ||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||| Sbjct: 400 aggacgagctcaagctcatcgccaagatgatcgaatgggacccatggggtgttcctgatg 459 Query: 433 actacgaatgcgaggtgattgaagataacacacctattcccaagcatgttccgcagcacc 492 |||| ||||||||||| ||||||||| |||||| ||| || || |||||||||||||| | Sbjct: 460 actatgaatgcgaggttattgaagatgacacacttatcccgaaacatgttccgcagcatc 519 Query: 493 ggcccgttgcact 505 |||| |||||||| Sbjct: 520 ggcctgttgcact 532
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 422 bits (213), Expect = e-115 Identities = 258/273 (94%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||||| Sbjct: 11154308 tgaaggagacgacggggatcgtggggctggaggtggtgcccaacgcgcgggaggtgctcg 11154367 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11154368 tcggcctctacacccgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 11154427 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 11154428 gcaaggccgtcgagtccttcacccgccaccgcctccagatctgccaggaggaggacgact 11154487 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 |||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||| Sbjct: 11154488 ggaagcgcatcgaggaccgcatcggctgcggccaggtcgaggagctcatcgaggaggccc 11154547 Query: 373 aggacgagctcaagctcatcggcaagatgatcg 405 ||||||||||||||||||||| ||||||||||| Sbjct: 11154548 aggacgagctcaagctcatcgccaagatgatcg 11154580 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 408 tgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacct 467 ||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||| | Sbjct: 11156614 tgggacccatggggtgttcctgatgactatgaatgcgaggttattgaagatgacacactt 11156673 Query: 468 attcccaagcatgttccgcagcaccggcccgttgcact 505 || || || |||||||||||||| ||||| |||||||| Sbjct: 11156674 atcccgaaacatgttccgcagcatcggcctgttgcact 11156711
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 422 bits (213), Expect = e-115 Identities = 258/273 (94%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||||| Sbjct: 67665 tgaaggagacgacggggatcgtggggctggaggtggtgcccaacgcgcgggaggtgctcg 67724 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67725 tcggcctctacacccgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 67784 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 67785 gcaaggccgtcgagtccttcacccgccaccgcctccagatctgccaggaggaggacgact 67844 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 |||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||| Sbjct: 67845 ggaagcgcatcgaggaccgcatcggctgcggccaggtcgaggagctcatcgaggaggccc 67904 Query: 373 aggacgagctcaagctcatcggcaagatgatcg 405 ||||||||||||||||||||| ||||||||||| Sbjct: 67905 aggacgagctcaagctcatcgccaagatgatcg 67937 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 408 tgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacct 467 ||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||| | Sbjct: 69971 tgggacccatggggtgttcctgatgactatgaatgcgaggttattgaagatgacacactt 70030 Query: 468 attcccaagcatgttccgcagcaccggcccgttgcact 505 || || || |||||||||||||| ||||| |||||||| Sbjct: 70031 atcccgaaacatgttccgcagcatcggcctgttgcact 70068
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 422 bits (213), Expect = e-115 Identities = 258/273 (94%) Strand = Plus / Minus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||||| Sbjct: 126421 tgaaggagacgacggggatcgtggggctggaggtggtgcccaacgcgcgggaggtgctcg 126362 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126361 tcggcctctacacccgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 126302 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 126301 gcaaggccgtcgagtccttcacccgccaccgcctccagatctgccaggaggaggacgact 126242 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 |||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||| Sbjct: 126241 ggaagcgcatcgaggaccgcatcggctgcggccaggtcgaggagctcatcgaggaggccc 126182 Query: 373 aggacgagctcaagctcatcggcaagatgatcg 405 ||||||||||||||||||||| ||||||||||| Sbjct: 126181 aggacgagctcaagctcatcgccaagatgatcg 126149 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 408 tgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacct 467 ||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||| | Sbjct: 124115 tgggacccatggggtgttcctgatgactatgaatgcgaggttattgaagatgacacactt 124056 Query: 468 attcccaagcatgttccgcagcaccggcccgttgcact 505 || || || |||||||||||||| ||||| |||||||| Sbjct: 124055 atcccgaaacatgttccgcagcatcggcctgttgcact 124018
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 422 bits (213), Expect = e-115 Identities = 258/273 (94%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||||| Sbjct: 11151071 tgaaggagacgacggggatcgtggggctggaggtggtgcccaacgcgcgggaggtgctcg 11151130 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11151131 tcggcctctacacccgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 11151190 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 11151191 gcaaggccgtcgagtccttcacccgccaccgcctccagatctgccaggaggaggacgact 11151250 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 |||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||| Sbjct: 11151251 ggaagcgcatcgaggaccgcatcggctgcggccaggtcgaggagctcatcgaggaggccc 11151310 Query: 373 aggacgagctcaagctcatcggcaagatgatcg 405 ||||||||||||||||||||| ||||||||||| Sbjct: 11151311 aggacgagctcaagctcatcgccaagatgatcg 11151343 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 408 tgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacct 467 ||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||| | Sbjct: 11153377 tgggacccatggggtgttcctgatgactatgaatgcgaggttattgaagatgacacactt 11153436 Query: 468 attcccaagcatgttccgcagcaccggcccgttgcact 505 || || || |||||||||||||| ||||| |||||||| Sbjct: 11153437 atcccgaaacatgttccgcagcatcggcctgttgcact 11153474
>gb|BT017270.1| Zea mays clone EL01N0312E10.c mRNA sequence Length = 800 Score = 400 bits (202), Expect = e-108 Identities = 328/370 (88%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 |||||||||||||||||||||| || || || |||| |||| | |||||||| || |||| Sbjct: 138 tgaaggagacgacggggatcgtcggccttgaggtggcgcccaacgcgcgggaggttctca 197 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 198 tcgggctctacacgcgtacgctcaaggagatcgaggccgtccccaaagacgagggctacc 257 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||| |||||||||||| || |||||||||||||||||||||||||| |||| Sbjct: 258 gcaaggccgttgagtccttcaccaatcaccgcctccagatctgccaggaggaggacgact 317 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 ||| | ||||||||||||| |||| ||||| | || || |||||||||||||||||| Sbjct: 318 ggatgtgcatcgaggaccgaatcggatgcgggcaagtcgaggagctcatcgaggaggccg 377 Query: 373 aggacgagctcaagctcatcggcaagatgatcgagtgggatccctggggtgttcctgatg 432 ||||||||||||||||||||| ||| ||||| || |||||||| |||||||| ||||||| Sbjct: 378 aggacgagctcaagctcatcgccaaaatgattgaatgggatccgtggggtgtccctgatg 437 Query: 433 actacgaatgcgaggtgattgaagataacacacctattcccaagcatgttccgcagcacc 492 |||||||||| |||||||||||||| |||| || ||||| ||||||||||| ||||||| Sbjct: 438 actacgaatgtgaggtgattgaagacgacaccccaattcctaagcatgttcctcagcacc 497 Query: 493 ggcccgttgc 502 |||||||||| Sbjct: 498 ggcccgttgc 507
>gb|AY109412.1| Zea mays CL3751_1 mRNA sequence Length = 1279 Score = 353 bits (178), Expect = 4e-94 Identities = 322/370 (87%) Strand = Plus / Plus Query: 133 tgaaggagacgacggggatcgtgggtctggacgtggtgcccgaggcgcgggatgtgctca 192 ||||||||||||||||||||||||| || || |||||||| | ||||| || || || Sbjct: 129 tgaaggagacgacggggatcgtgggccttgaggtggtgcctaacgcgcgagaggttctgg 188 Query: 193 tcgggctctacacgcgcaccctcaaggagatcgaggccgtccccaaggacgagggctacc 252 | ||||||||| |||||| ||||| |||||| ||||||||||| | |||||||| |||| Sbjct: 189 tagggctctacgagcgcacgctcaaagagatcaaggccgtccccgaagacgagggttacc 248 Query: 253 gcaaggccgtcgagtccttcacccgccatcgcctccagatctgccaggaggaggaggact 312 |||||||||| || ||||||||| | || ||||||||||||||||||||||||||||||| Sbjct: 249 gcaaggccgttgaatccttcaccggtcaccgcctccagatctgccaggaggaggaggact 308 Query: 313 ggaagcgcatcgaggaccgcctcggctgcggccgggttgaagagctcatcgaggaggccc 372 ||||||||||||||||||| |||| ||||| | ||| || |||||||||||||||||| Sbjct: 309 ggaagcgcatcgaggaccgaatcggatgcgggcaggtcgaggagctcatcgaggaggccg 368 Query: 373 aggacgagctcaagctcatcggcaagatgatcgagtgggatccctggggtgttcctgatg 432 ||||||||||||||||||||| || ||||| || |||||||| ||||||||||| |||| Sbjct: 369 aggacgagctcaagctcatcgctaaaatgattgaatgggatccatggggtgttcccgatg 428 Query: 433 actacgaatgcgaggtgattgaagataacacacctattcccaagcatgttccgcagcacc 492 |||||||||| |||||||||||||| |||| || ||||| ||||||||||| ||||||| Sbjct: 429 actacgaatgtgaggtgattgaagacgacaccccaattcctaagcatgttcctcagcacc 488 Query: 493 ggcccgttgc 502 |||| ||||| Sbjct: 489 ggcctgttgc 498
>gb|DQ226613.1| Boechera divaricarpa isolate SLW-3-G03 mRNA sequence Length = 535 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 399 atgatcgagtgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagat 458 |||||||| |||||||| ||||||||||| ||||| ||||| ||||| || ||||| || Sbjct: 231 atgatcgaatgggatccttggggtgttccagatgattacgagtgcgaagtcattgagaat 172 Query: 459 aacacacctattcccaagcatgttccgcagcaccg 493 | |||| || ||||| ||||||||||||||||| Sbjct: 171 gatgcaccgatacccaaacatgttccgcagcaccg 137
>ref|NM_124662.2| Arabidopsis thaliana oxidoreductase, acting on NADH or NADPH AT5G52840 mRNA, complete cds Length = 786 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 351 gaagagctcatcgaggaggcccaggacgagctcaagctcatcggcaagatgatcgagtgg 410 |||||||| ||||| ||||| | || ||||||| ||||| || || ||||| |||||| Sbjct: 323 gaagagcttatcgaagaggctcgcgatgagctcacactcattgggaaaatgattgagtgg 382 Query: 411 gatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacctatt 470 ||||| |||||||| || ||||| ||||| || || |||||||| || | | || ||| Sbjct: 383 gatccttggggtgtaccagatgattacgagtgtgaagtgattgagaatgatgcgccgatt 442 Query: 471 cccaagcatgttccgcagcaccg 493 || ||||||||||| |||||||| Sbjct: 443 ccaaagcatgttcctcagcaccg 465
>gb|AY079117.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, complete cds Length = 510 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 351 gaagagctcatcgaggaggcccaggacgagctcaagctcatcggcaagatgatcgagtgg 410 |||||||| ||||| ||||| | || ||||||| ||||| || || ||||| |||||| Sbjct: 259 gaagagcttatcgaagaggctcgcgatgagctcacactcattgggaaaatgattgagtgg 318 Query: 411 gatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacctatt 470 ||||| |||||||| || ||||| ||||| || || |||||||| || | | || ||| Sbjct: 319 gatccttggggtgtaccagatgattacgagtgtgaagtgattgagaatgatgcgccgatt 378 Query: 471 cccaagcatgttccgcagcaccg 493 || ||||||||||| |||||||| Sbjct: 379 ccaaagcatgttcctcagcaccg 401
>gb|AY054251.1| Arabidopsis thaliana AT5g52840/MXC20_6 mRNA, complete cds Length = 737 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 351 gaagagctcatcgaggaggcccaggacgagctcaagctcatcggcaagatgatcgagtgg 410 |||||||| ||||| ||||| | || ||||||| ||||| || || ||||| |||||| Sbjct: 323 gaagagcttatcgaagaggctcgcgatgagctcacactcattgggaaaatgattgagtgg 382 Query: 411 gatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacctatt 470 ||||| |||||||| || ||||| ||||| || || |||||||| || | | || ||| Sbjct: 383 gatccttggggtgtaccagatgattacgagtgtgaagtgattgagaatgatgcgccgatt 442 Query: 471 cccaagcatgttccgcagcaccg 493 || ||||||||||| |||||||| Sbjct: 443 ccaaagcatgttcctcagcaccg 465
>emb|BX833220.1|CNS0A1UY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZG07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 724 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 351 gaagagctcatcgaggaggcccaggacgagctcaagctcatcggcaagatgatcgagtgg 410 |||||||| ||||| ||||| | || ||||||| ||||| || || ||||| |||||| Sbjct: 302 gaagagcttatcgaagaggctcgcgatgagctcacactcattgggaaaatgattgagtgg 361 Query: 411 gatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacacacctatt 470 ||||| |||||||| || ||||| ||||| || || |||||||| || | | || ||| Sbjct: 362 gatccttggggtgtaccagatgattacgagtgtgaagtgattgagaatgatgcgccgatt 421 Query: 471 cccaagcatgttccgcagcaccg 493 || ||||||||||| |||||||| Sbjct: 422 ccaaagcatgttcctcagcaccg 444
>dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20 Length = 81575 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 405 gagtgggatccctggggtgttcctgatgactacgaatgcgaggtgattgaagataacaca 464 ||||||||||| |||||||| || ||||| ||||| || || |||||||| || | | Sbjct: 19653 gagtgggatccttggggtgtaccagatgattacgagtgtgaagtgattgagaatgatgcg 19712 Query: 465 cctattcccaagcatgttccgcagcaccg 493 || ||||| ||||||||||| |||||||| Sbjct: 19713 ccgattccaaagcatgttcctcagcaccg 19741
>gb|AF439273.1|AF439273 Retama raetam NADH-ubiquinone oxidoreductase mRNA, partial cds Length = 622 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 gggatcgtgggtctggacgtggtgcc 172 |||||||||||||| ||||||||||| Sbjct: 14 gggatcgtgggtctagacgtggtgcc 39
>ref|XM_958190.1| Neurospora crassa OR74A hypothetical protein (NCU08411.1) partial mRNA Length = 1290 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 216 aaggagatcgaggccgtccccaaggacgagggc 248 |||||||||||||||||| ||||||| ||||| Sbjct: 676 aaggagatcgaggccgtcgtcaaggacaagggc 708
>ref|XM_329456.1| Neurospora crassa OR74A hypothetical protein (NCU08411.1) partial mRNA Length = 1290 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 216 aaggagatcgaggccgtccccaaggacgagggc 248 |||||||||||||||||| ||||||| ||||| Sbjct: 676 aaggagatcgaggccgtcgtcaaggacaagggc 708
>gb|AE009357.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 127 of 187 of the complete sequence Length = 11647 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 cgcatcgaggaccgcctcggc 338 ||||||||||||||||||||| Sbjct: 5626 cgcatcgaggaccgcctcggc 5606
>gb|AE008255.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 59 of 187 of the complete sequence Length = 10966 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 cgcatcgaggaccgcctcggc 338 ||||||||||||||||||||| Sbjct: 10013 cgcatcgaggaccgcctcggc 10033
>gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransferase gene, complete cds Length = 3312 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 cagaagaagaagacggcggcg 66 ||||||||||||||||||||| Sbjct: 2885 cagaagaagaagacggcggcg 2865
>gb|AE005962.1| Caulobacter crescentus CB15 section 288 of 359 of the complete genome Length = 10708 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cgagggctaccgcaaggccgt 262 ||||||||||||||||||||| Sbjct: 10135 cgagggctaccgcaaggccgt 10115
>gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase mRNA, complete cds Length = 1458 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 cagaagaagaagacggcggcg 66 ||||||||||||||||||||| Sbjct: 1304 cagaagaagaagacggcggcg 1284
>gb|AY466441.1| Saccharopolyspora spinosa NRLL 18395 obscurin polyketide synthase gene locus, complete sequence Length = 108584 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 tcggctgcggccgggttgaagagct 358 |||||||||||||||| |||||||| Sbjct: 68539 tcggctgcggccgggtcgaagagct 68563
>gb|AE004771.1| Pseudomonas aeruginosa PAO1, section 332 of 529 of the complete genome Length = 10944 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 cgagggctaccgcaaggccgtcgag 266 ||||||||||||| ||||||||||| Sbjct: 6064 cgagggctaccgccaggccgtcgag 6040
>ref|XM_464309.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1370 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggaggaggaggactggaag 317 |||||||||||||||||||| Sbjct: 153 aggaggaggaggactggaag 172
>ref|NM_001016021.2| Xenopus tropicalis hypothetical protein LOC548775 (LOC548775), mRNA Length = 2162 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 527 tgccaggaggaggaggactg 508
>gb|BC085002.1| Xenopus tropicalis cDNA clone IMAGE:7029264 Length = 2300 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 638 tgccaggaggaggaggactg 619
>gb|BC084194.1| Xenopus laevis orthodenticle homolog 5, mRNA (cDNA clone MGC:79897 IMAGE:5156432), complete cds Length = 2510 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 561 tgccaggaggaggaggactg 542
>ref|XM_370515.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG07012.4) partial mRNA Length = 1644 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 agctcaagctcatcggcaag 398 |||||||||||||||||||| Sbjct: 608 agctcaagctcatcggcaag 627
>gb|BC077545.1| Xenopus laevis OTX5b protein, mRNA (cDNA clone MGC:83443 IMAGE:4740548), complete cds Length = 2323 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 627 tgccaggaggaggaggactg 608
>gb|BC058629.1| Mus musculus RIKEN cDNA 4121402D02 gene, mRNA (cDNA clone MGC:64809 IMAGE:6402215), complete cds Length = 2933 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2175 aggacgagctcaagctcatc 2156
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tggacgtggtgcccgaggcg 179 |||||||||||||||||||| Sbjct: 2263309 tggacgtggtgcccgaggcg 2263290
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gaagaagaagacggcggcgg 67 |||||||||||||||||||| Sbjct: 77244 gaagaagaagacggcggcgg 77225
>ref|XM_994112.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript variant 5 (4121402D02Rik), mRNA Length = 3193 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 1024 aggacgagctcaagctcatc 1005
>ref|XM_994091.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript variant 2 (4121402D02Rik), mRNA Length = 4296 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2127 aggacgagctcaagctcatc 2108
>ref|XM_994132.1| PREDICTED: Mus musculus RIKEN cDNA 4121402D02 gene, transcript variant 2 (4121402D02Rik), mRNA Length = 4344 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2175 aggacgagctcaagctcatc 2156
>ref|XM_806281.1| Trypanosoma cruzi strain CL Brener surface protease GP63 (Tc00.1047053507559.110) partial mRNA Length = 1968 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 ccagatctgccaggaggaggagga 310 |||||||||||||||||| ||||| Sbjct: 991 ccagatctgccaggaggaagagga 1014
>emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chromosome 13, complete sequence Length = 165011 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 413 tccctggggtgttcctgatgacta 436 |||||||||||||||| ||||||| Sbjct: 44662 tccctggggtgttccttatgacta 44639
>emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on chromosome 13 Contains the 5' end of the STK24 gene for serine/threonine kinase 24, a novel gene, a novel pseudogene, a cytochrome c pseudogene, a calmodulin 2 (CALM2) pseudogene and a CpG island, complete sequence Length = 174041 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 caggaggaggaggactggaa 316 |||||||||||||||||||| Sbjct: 133740 caggaggaggaggactggaa 133721
>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8 Length = 341553 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gccgtcgagtccttcacccg 277 |||||||||||||||||||| Sbjct: 299580 gccgtcgagtccttcacccg 299561
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gcccaggacgagctcaagct 388 |||||||||||||||||||| Sbjct: 61176 gcccaggacgagctcaagct 61195
>emb|AJ251846.1|XLA251846 Xenopus laevis mRNA for OTX5b protein (otx5b gene) Length = 1575 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 696 tgccaggaggaggaggactg 677
>ref|NM_028722.1| Mus musculus RIKEN cDNA 4121402D02 gene (4121402D02Rik), mRNA Length = 3161 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2428 aggacgagctcaagctcatc 2409
>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence Length = 177300 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tgggatccctggggtgttcc 427 |||||||||||||||||||| Sbjct: 97196 tgggatccctggggtgttcc 97215
>dbj|AK053719.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130302B09 product:hypothetical protein, full insert sequence Length = 2839 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2098 aggacgagctcaagctcatc 2079
>dbj|AK014463.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:4121402D02 product:hypothetical Proline-rich region containing protein, full insert sequence Length = 3161 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 2428 aggacgagctcaagctcatc 2409
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gaagaagaagacggcggcgg 67 |||||||||||||||||||| Sbjct: 18284032 gaagaagaagacggcggcgg 18284013
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggaggaggaggactggaag 317 |||||||||||||||||||| Sbjct: 4024839 aggaggaggaggactggaag 4024858
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21 Length = 170051 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggaggaggaggactggaag 317 |||||||||||||||||||| Sbjct: 71505 aggaggaggaggactggaag 71524
>dbj|AK070565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056M07, full insert sequence Length = 1370 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggaggaggaggactggaag 317 |||||||||||||||||||| Sbjct: 153 aggaggaggaggactggaag 172
>gb|AY105501.1| Zea mays PCO142408 mRNA sequence Length = 1374 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggaggaggaggactggaag 317 |||||||||||||||||||| Sbjct: 134 aggaggaggaggactggaag 153
>emb|CR848167.2| Xenopus tropicalis finished cDNA, clone TGas127o03 Length = 2162 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 527 tgccaggaggaggaggactg 508
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 349 ttgaagagctcatcgaggaggcccagga 376 |||||||||||| |||||||||||||| Sbjct: 1981943 ttgaagagctcaaagaggaggcccagga 1981916
>emb|AL590963.11| Mouse DNA sequence from clone RP23-395E10 on chromosome 11, complete sequence Length = 196724 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 aggacgagctcaagctcatc 392 |||||||||||||||||||| Sbjct: 52883 aggacgagctcaagctcatc 52902
>dbj|AB034702.1| Xenopus laevis Xotx5 mRNA, complete cds Length = 1310 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tgccaggaggaggaggactg 313 |||||||||||||||||||| Sbjct: 572 tgccaggaggaggaggactg 553 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,334,449 Number of Sequences: 3902068 Number of extensions: 4334449 Number of successful extensions: 84510 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84126 Number of HSP's gapped (non-prelim): 377 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)