ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged... 33 0.57
2MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D) 31 2.2

>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced|
           T-cell lymphomas) (Frat-1)
          Length = 279

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 34  RSLQLVSSISLRGLISPLSAPRHQSPK-QQRHSSISIPGATKEKEAAAGQKV 186
           R LQL + +  R L+ PLSAP H+ P  +   ++ S PGA+   +   G  V
Sbjct: 223 RRLQLRAKLPQRPLLGPLSAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGV 274



to top

>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)|
          Length = 1938

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 175 GQKVDQLRWILGGMGRGLY 231
           GQ VDQ+ W +G M +GLY
Sbjct: 412 GQNVDQVHWAIGAMAKGLY 430


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,795,476
Number of Sequences: 219361
Number of extensions: 903452
Number of successful extensions: 2725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2716
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top