Clone Name | bart33c06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B02, full insert sequence Length = 1127 Score = 398 bits (201), Expect = e-108 Identities = 315/353 (89%) Strand = Plus / Plus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 237 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 164 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 223 Query: 238 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 297 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 224 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 283 Query: 298 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 357 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 284 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 343 Query: 358 atgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattgctgct 417 ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct: 344 atgttcctcgagaagaagcaggacgaagttgtagctaggatagaggagaggattgcagct 403 Query: 418 tggactttccttccgtcggagaatggcgagtccattcaaatattacattataagaatggt 477 ||||| |||||||| | || |||||||| ||||||||||||||||||||| ||||||| Sbjct: 404 tggacgttccttccaccagataatggcgaatccattcaaatattacattatcagaatggc 463 Query: 478 gagaagtatgagccacactacgattacttcgatgacaaaaataaccaagctct 530 |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 464 gagaagtatgagccacactatgattacttccatgacaaaaataatcaagctct 516
>dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A08, full insert sequence Length = 1212 Score = 398 bits (201), Expect = e-108 Identities = 315/353 (89%) Strand = Plus / Plus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 237 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 162 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 221 Query: 238 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 297 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 222 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 281 Query: 298 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 357 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 282 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 341 Query: 358 atgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattgctgct 417 ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct: 342 atgttcctcgagaagaagcaggacgaagttgtagctaggatagaggagaggattgcagct 401 Query: 418 tggactttccttccgtcggagaatggcgagtccattcaaatattacattataagaatggt 477 ||||| |||||||| | || |||||||| ||||||||||||||||||||| ||||||| Sbjct: 402 tggacgttccttccaccagataatggcgaatccattcaaatattacattatcagaatggc 461 Query: 478 gagaagtatgagccacactacgattacttcgatgacaaaaataaccaagctct 530 |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| Sbjct: 462 gagaagtatgagccacactatgattacttccatgacaaaaataatcaagctct 514
>gb|BT016704.1| Zea mays clone Contig537 mRNA sequence Length = 1224 Score = 283 bits (143), Expect = 3e-73 Identities = 302/355 (85%) Strand = Plus / Plus Query: 173 ccttcgacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaagg 232 |||||||||| ||||| || ||||| |||||||||| |||||| |||||||||||||||| Sbjct: 198 ccttcgacccatcccgagtggtccaactctcgtggcgccccagggcgttcctgcacaagg 257 Query: 233 ggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgaga 292 | ||||| ||||| ||||||||||||||| | |||| |||||| ||||||||||| |||| Sbjct: 258 gtttcctgtcggatgcggagtgcgaccacctcatcgcgctggccaaggacaagctggaga 317 Query: 293 agtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagct 352 |||| |||||||| || || ||||| || ||||| |||||||| || ||||| ||||||| Sbjct: 318 agtctatggtggccgataacgagtccggtaagagtgtccagagtgaggtgcgcaccagct 377 Query: 353 ctggcatgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattg 412 | |||||||| ||||||| || ||||||||||||||| | | |||||||||||||| Sbjct: 378 ccggcatgttcctcgagaggaagcaggatgaagtagtaacgagaatagaggagaggatat 437 Query: 413 ctgcttggactttccttccgtcggagaatggcgagtccattcaaatattacattataaga 472 |||||||||| || ||||| | || |||||||| |||||||| |||||||| || ||| Sbjct: 438 ctgcttggacatttcttccaccagaaaatggcgaatccattcagatattacactaccaga 497 Query: 473 atggtgagaagtatgagccacactacgattacttcgatgacaaaaataaccaagc 527 |||||||||| ||||| || |||||||| |||||| |||||||||| || ||||| Sbjct: 498 atggtgagaaatatgaaccccactacgactacttccatgacaaaaaaaatcaagc 552
>gb|AY109606.1| Zea mays CL4591_1 mRNA sequence Length = 1093 Score = 272 bits (137), Expect = 1e-69 Identities = 290/341 (85%) Strand = Plus / Plus Query: 173 ccttcgacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaagg 232 |||||||||| ||||| || ||||| |||||||||| |||||| |||||||||||||||| Sbjct: 116 ccttcgacccatcccgagtggtccaactctcgtggcgccccagggcgttcctgcacaagg 175 Query: 233 ggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgaga 292 | ||||| ||||| ||||||||||||||| | |||| |||||| ||||||||||| |||| Sbjct: 176 gtttcctgtcggatgcggagtgcgaccacctcatcgcgctggccaaggacaagctggaga 235 Query: 293 agtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagct 352 |||| |||||||| || || ||||| || ||||| |||||||| || ||||| ||||||| Sbjct: 236 agtctatggtggccgataacgagtccggtaagagtgtccagagtgaggtgcgcaccagct 295 Query: 353 ctggcatgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattg 412 | |||||||| ||||||| || ||||||||||||||| | | |||||||||||||| Sbjct: 296 ccggcatgttcctcgagaggaagcaggatgaagtagtaacgagaatagaggagaggatat 355 Query: 413 ctgcttggactttccttccgtcggagaatggcgagtccattcaaatattacattataaga 472 |||||||||| || ||||| | || |||||||| |||||||| |||||||| || ||| Sbjct: 356 ctgcttggacatttcttccaccagaaaatggcgaatccattcagatattacactaccaga 415 Query: 473 atggtgagaagtatgagccacactacgattacttcgatgac 513 |||||||||| ||||| || |||||||| |||||| ||||| Sbjct: 416 atggtgagaaatatgaaccccactacgactacttccatgac 456
>ref|NM_196478.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0045B21.11), mRNA Length = 1110 Score = 230 bits (116), Expect = 4e-57 Identities = 176/196 (89%) Strand = Plus / Plus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 237 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 121 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 180 Query: 238 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 297 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 181 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 240 Query: 298 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 357 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 241 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 300 Query: 358 atgtttctcgagaaga 373 ||||| |||||||||| Sbjct: 301 atgttcctcgagaaga 316 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Plus Query: 382 gaagtagtagcaatgatagaggagaggattgctgcttggactttccttccgtcggagaat 441 ||||| ||||| | |||||||||||||||||| |||||||| |||||||| | || ||| Sbjct: 469 gaagttgtagctaggatagaggagaggattgcagcttggacgttccttccaccagataat 528 Query: 442 ggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactacgat 501 ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| Sbjct: 529 ggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactatgat 588 Query: 502 tacttcgatgacaaaaataaccaagctct 530 |||||| ||||||||||||| |||||||| Sbjct: 589 tacttccatgacaaaaataatcaagctct 617
>dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G23, full insert sequence Length = 1152 Score = 180 bits (91), Expect = 3e-42 Identities = 139/155 (89%) Strand = Plus / Plus Query: 376 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttccgtcg 435 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| | Sbjct: 6 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttccacca 65 Query: 436 gagaatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacac 495 || |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 66 gataatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacac 125 Query: 496 tacgattacttcgatgacaaaaataaccaagctct 530 || ||||||||| ||||||||||||| |||||||| Sbjct: 126 tatgattacttccatgacaaaaataatcaagctct 160
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 135 bits (68), Expect = 2e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 439 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 498 |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 82923 aatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactat 82864 Query: 499 gattacttcgatgacaaaaataaccaagctct 530 ||||||||| ||||||||||||| |||||||| Sbjct: 82863 gattacttccatgacaaaaataatcaagctct 82832 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 273 ggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcca 332 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 85254 ggcgaaggacaagctggagaagtcgatggtggcggacaacgagtccgggaagagcgtcat 85195 Query: 333 gagcgaagtgcgaaccagctctggcatgtttctcgagaaga 373 |||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 85194 gagcgaggtgcggaccagctccggcatgttcctcgagaaga 85154 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 217 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatc 267 ||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct: 85393 gcgttcctgcacaaggggttcctgacggacgcggagtgcgagcacctgatc 85343 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 376 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 431 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| Sbjct: 83079 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttcc 83024 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccag 215 ||||| ||||||||||| ||||||||||||| |||||| Sbjct: 85537 gacccatcccgcgtcgtgcagctctcgtggcgccccag 85500
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 135 bits (68), Expect = 2e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 439 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 498 |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 13914297 aatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactat 13914238 Query: 499 gattacttcgatgacaaaaataaccaagctct 530 ||||||||| ||||||||||||| |||||||| Sbjct: 13914237 gattacttccatgacaaaaataatcaagctct 13914206 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 273 ggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcca 332 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 13916628 ggcgaaggacaagctggagaagtcgatggtggcggacaacgagtccgggaagagcgtcat 13916569 Query: 333 gagcgaagtgcgaaccagctctggcatgtttctcgagaaga 373 |||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 13916568 gagcgaggtgcggaccagctccggcatgttcctcgagaaga 13916528 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 217 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatc 267 ||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct: 13916767 gcgttcctgcacaaggggttcctgacggacgcggagtgcgagcacctgatc 13916717 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 376 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 431 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| Sbjct: 13914453 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttcc 13914398 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccag 215 ||||| ||||||||||| ||||||||||||| |||||| Sbjct: 13916911 gacccatcccgcgtcgtgcagctctcgtggcgccccag 13916874
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 135 bits (68), Expect = 2e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 439 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 498 |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 13921639 aatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactat 13921580 Query: 499 gattacttcgatgacaaaaataaccaagctct 530 ||||||||| ||||||||||||| |||||||| Sbjct: 13921579 gattacttccatgacaaaaataatcaagctct 13921548 Score = 121 bits (61), Expect = 2e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 273 ggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcca 332 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 13923970 ggcgaaggacaagctggagaagtcgatggtggcggacaacgagtccgggaagagcgtcat 13923911 Query: 333 gagcgaagtgcgaaccagctctggcatgtttctcgagaaga 373 |||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 13923910 gagcgaggtgcggaccagctccggcatgttcctcgagaaga 13923870 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 217 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatc 267 ||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct: 13924109 gcgttcctgcacaaggggttcctgacggacgcggagtgcgagcacctgatc 13924059 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 376 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 431 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| Sbjct: 13921795 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttcc 13921740 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 178 gacccctcccgcgtcgtccagctctcgtggcaccccag 215 ||||| ||||||||||| ||||||||||||| |||||| Sbjct: 13924253 gacccatcccgcgtcgtgcagctctcgtggcgccccag 13924216
>ref|XM_469991.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1365 Score = 89.7 bits (45), Expect = 9e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 250 gagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggac 309 |||||||||||| | || || ||| |||||| ||||| ||| ||| |||||||| ||| Sbjct: 273 gagtgcgaccaccttgtcaagttggggaaggagaagctgaagaggtccatggtggcagac 332 Query: 310 aatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggcatgtt 362 ||||||||||||||||| || |||||||||||| ||||||||||||||||| Sbjct: 333 aatgagtcgggaaagagtgttatgagcgaagtgcgcaccagctctggcatgtt 385
>ref|XM_476973.1| Oryza sativa (japonica cultivar-group), mRNA Length = 942 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 227 acaaggggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagc 286 |||||||||||||||| |||| |||||||||||| | || |||||| |||| ||| Sbjct: 188 acaaggggttcctctccgacgacgagtgcgaccacctcgtcaagctggggaagaggaaga 247 Query: 287 ttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaa 346 | ||| |||||||||||||||||| |||| || ||||||||| |||||| ||||| | Sbjct: 248 tgcagaggtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcgga 307 Query: 347 ccagctctggcatgtttctcgagaagagtcaggat 381 ||||||| |||||||| ||||| ||| | |||||| Sbjct: 308 ccagctccggcatgttcctcgacaagcgccaggat 342
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 276 gaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagag 335 |||||| ||||| ||| ||| |||||||| |||||||||||||||||||| || ||| Sbjct: 33217322 gaaggagaagctgaagaggtccatggtggcagacaatgagtcgggaaagagtgttatgag 33217263 Query: 336 cgaagtgcgaaccagctctggcatgtt 362 ||||||||| ||||||||||||||||| Sbjct: 33217262 cgaagtgcgcaccagctctggcatgtt 33217236 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 213 cagagcgttcctgcacaaggggttcctctcggacgcggagtgcgaccac 261 ||||||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 3548678 cagagcgttcctgtacgaggggttcctgtcggatgcggagtgcgaccac 3548726 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 3552551 aggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 3552596 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 3549499 aggatgaagttgttgcaagaatagaggagaggattgcggcttggac 3549544
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 276 gaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagag 335 |||||| ||||| ||| ||| |||||||| |||||||||||||||||||| || ||| Sbjct: 33307832 gaaggagaagctgaagaggtccatggtggcagacaatgagtcgggaaagagtgttatgag 33307773 Query: 336 cgaagtgcgaaccagctctggcatgtt 362 ||||||||| ||||||||||||||||| Sbjct: 33307772 cgaagtgcgcaccagctctggcatgtt 33307746 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 213 cagagcgttcctgcacaaggggttcctctcggacgcggagtgcgaccac 261 ||||||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 3548789 cagagcgttcctgtacgaggggttcctgtcggatgcggagtgcgaccac 3548837 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 3552662 aggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 3552707 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 3549610 aggatgaagttgttgcaagaatagaggagaggattgcggcttggac 3549655
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 276 gaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagag 335 |||||| ||||| ||| ||| |||||||| |||||||||||||||||||| || ||| Sbjct: 27233 gaaggagaagctgaagaggtccatggtggcagacaatgagtcgggaaagagtgttatgag 27292 Query: 336 cgaagtgcgaaccagctctggcatgtt 362 ||||||||| ||||||||||||||||| Sbjct: 27293 cgaagtgcgcaccagctctggcatgtt 27319
>dbj|AK121816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098K22, full insert sequence Length = 1126 Score = 85.7 bits (43), Expect = 1e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 227 acaaggggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagc 286 |||||||||||||||| |||| |||||||||||| | || |||||| |||| ||| Sbjct: 266 acaaggggttcctctccgacgacgagtgcgaccacctcgtcaagctggggaagaggaaga 325 Query: 287 ttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaa 346 | ||| |||||||||||||||||| |||| || ||||||||| |||||| ||||| | Sbjct: 326 tgcagaggtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcgga 385 Query: 347 ccagctctggcatgtttctcgagaagagtcaggat 381 ||||||| |||||||| ||||| ||| | |||||| Sbjct: 386 ccagctccggcatgttcctcgacaagcgccaggat 420
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 277 aaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagc 336 ||||||||||| |||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 5629 aaggacaagctggagaagtctatggtggccgataacgagtccggtaagagtgtccagagt 5688 Query: 337 gaagtgcgaaccagctctggcatgtttctcgaga 370 || ||||| |||||||| |||||||| ||||||| Sbjct: 5689 gaggtgcgcaccagctccggcatgttcctcgaga 5722 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 439 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 498 |||||||| |||||||| |||||||| || ||||||||||||| ||||| || |||||| Sbjct: 24778 aatggcgaatccattcagatattacactaccagaatggtgagaaatatgaaccccactac 24837 Query: 499 gattacttcgatgacaaaaataaccaagc 527 || |||||| |||||||||| || ||||| Sbjct: 24838 gactacttccatgacaaaaaaaatcaagc 24866 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 217 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatcgagctgg 274 ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| ||||| Sbjct: 5480 gcgttcctgcacaagggtttcctgtcggatgcggagtgcgaccacctcatcgcgctgg 5537 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 374 gtcaggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 431 ||||||||||||||||| | | |||||||||||||| |||||||||| || ||||| Sbjct: 24607 gtcaggatgaagtagtaacgagaatagaggagaggatatctgcttggacatttcttcc 24664
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 277 aaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagc 336 ||||||||||| |||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 8301 aaggacaagctggagaagtctatggtggccgataacgagtccggtaagagtgtccagagt 8360 Query: 337 gaagtgcgaaccagctctggcatgtttctcgaga 370 || ||||| |||||||| |||||||| ||||||| Sbjct: 8361 gaggtgcgcaccagctccggcatgttcctcgaga 8394 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 439 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 498 |||||||| |||||||| |||||||| || ||||||||||||| ||||| || |||||| Sbjct: 27435 aatggcgaatccattcagatattacactaccagaatggtgagaaatatgaaccccactac 27494 Query: 499 gattacttcgatgacaaaaataaccaagc 527 || |||||| |||||||||| || ||||| Sbjct: 27495 gactacttccatgacaaaaaaaatcaagc 27523 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 217 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatcgagctgg 274 ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| ||||| Sbjct: 8152 gcgttcctgcacaagggtttcctgtcggatgcggagtgcgaccacctcatcgcgctgg 8209 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 374 gtcaggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 431 ||||||||||||||||| | | |||||||||||||| |||||||||| || ||||| Sbjct: 27264 gtcaggatgaagtagtaacgagaatagaggagaggatatctgcttggacatttcttcc 27321
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 294 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 353 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 5150888 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 5150829 Query: 354 tggcatgtttctcga 368 |||||||| ||||| Sbjct: 5150828 cggcatgttcctcga 5150814 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 227 acaaggggttcctctcggacgcggagtgcgaccac 261 |||||||||||||||| |||| |||||||||||| Sbjct: 5151041 acaaggggttcctctccgacgacgagtgcgaccac 5151007
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 294 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 353 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 17602 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 17543 Query: 354 tggcatgtttctcga 368 |||||||| ||||| Sbjct: 17542 cggcatgttcctcga 17528 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 227 acaaggggttcctctcggacgcggagtgcgaccac 261 |||||||||||||||| |||| |||||||||||| Sbjct: 17755 acaaggggttcctctccgacgacgagtgcgaccac 17721
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 294 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 353 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 107055 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 106996 Query: 354 tggcatgtttctcga 368 |||||||| ||||| Sbjct: 106995 cggcatgttcctcga 106981 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 227 acaaggggttcctctcggacgcggagtgcgaccac 261 |||||||||||||||| |||| |||||||||||| Sbjct: 107208 acaaggggttcctctccgacgacgagtgcgaccac 107174
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 213 cagagcgttcctgcacaaggggttcctctcggacgcggagtgcgaccac 261 ||||||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 66331 cagagcgttcctgtacgaggggttcctgtcggatgcggagtgcgaccac 66379 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 70204 aggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 70249 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 67152 aggatgaagttgttgcaagaatagaggagaggattgcggcttggac 67197
>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete cds Length = 1201 Score = 63.9 bits (32), Expect = 5e-07 Identities = 128/160 (80%) Strand = Plus / Plus Query: 272 tggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcc 331 |||| ||||| ||| | ||||||||||||||||| || |||||||| || ||||| | | Sbjct: 302 tggcaaaggataagttagagaagtcgatggtggcagataatgagtctggtaagagtatac 361 Query: 332 agagcgaagtgcgaaccagctctggcatgtttctcgagaagagtcaggatgaagtagtag 391 |||||| || || || || ||||||||||||||| | ||| |||||||| ||||| | Sbjct: 362 cgagcgaggttcgcacgagttctggcatgtttctccaaaaggcgcaggatgatgtagttg 421 Query: 392 caatgatagaggagaggattgctgcttggactttccttcc 431 | || |||| || ||||||||||||||||||||||| Sbjct: 422 ctgcaatcgaggcaagaattgctgcttggactttccttcc 461
>ref|XM_469992.1| Oryza sativa (japonica cultivar-group), mRNA Length = 900 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 195 ccagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtg 254 |||||| || |||| |||||| ||||||||| ||| || ||||||||| ||| ||||| Sbjct: 114 ccagctatcctggcgccccagggcgttcctgtacagcggcttcctctcgcacgacgagtg 173 Query: 255 cgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggacaatga 314 ||||||| | || | |||||||||| | | | |||||||||||||| || |||||||| Sbjct: 174 cgaccacctcgtcaatctggcgaaggggaggatggagaagtcgatggttgcagacaatga 233
>dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full insert sequence Length = 1114 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 195 ccagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtg 254 |||||| || |||| |||||| ||||||||| ||| || ||||||||| ||| ||||| Sbjct: 128 ccagctatcctggcgccccagggcgttcctgtacagcggcttcctctcgcacgacgagtg 187 Query: 255 cgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggacaatga 314 ||||||| | || | |||||||||| | | | |||||||||||||| || |||||||| Sbjct: 188 cgaccacctcgtcaatctggcgaaggggaggatggagaagtcgatggttgcagacaatga 247
>gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence Length = 1150 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 196 cagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtgc 255 |||||||| | || |||||| ||||||||| ||| || |||||||||||| | |||||| Sbjct: 185 cagctctcctcgcgccccagggcgttcctgtacagcggcttcctctcggacaccgagtgc 244 Query: 256 gaccac 261 |||||| Sbjct: 245 gaccac 250
>gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosome 7, complete sequence Length = 196621 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 81 ggccatggctctttccctcctcctca 106 |||||||||||||||||||||||||| Sbjct: 80624 ggccatggctctttccctcctcctca 80649
>gb|AY108734.1| Zea mays PCO107217 mRNA sequence Length = 1418 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 466 tataagaatggtgagaagtatgagccacactacgattacttc 507 |||||| |||| ||||||||||| |||||||| ||||||||| Sbjct: 613 tataagcatggggagaagtatgaaccacactatgattacttc 654
>gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete sequence Length = 128625 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 275 cgaaggacaagcttgagaagtcgatggtggcggacaatga 314 ||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 65043 cgaaggataagctggagaagtctatggtggcggataatga 65004
>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence Length = 131063 Score = 48.1 bits (24), Expect = 0.030 Identities = 66/80 (82%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtg 342 |||||||||||||| ||||| ||||| ||||| || || ||||||| |||| ||||| Sbjct: 129655 aagcttgagaagtctatggttgcggataatgactctggtgagagcgttgagagtgaagta 129714 Query: 343 cgaaccagctctggcatgtt 362 || || |||||||| ||||| Sbjct: 129715 cgcacaagctctggaatgtt 129734
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 81 ggccatggctctttccctcctcc 103 ||||||||||||||||||||||| Sbjct: 22134 ggccatggctctttccctcctcc 22112
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 cgcgcttcacctcaccgctgcg 132 |||||||||||||||||||||| Sbjct: 1187566 cgcgcttcacctcaccgctgcg 1187587
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 cgcgcttcacctcaccgctgcg 132 |||||||||||||||||||||| Sbjct: 2503496 cgcgcttcacctcaccgctgcg 2503517
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 111 cgcgcttcacctcaccgctgcg 132 |||||||||||||||||||||| Sbjct: 259410 cgcgcttcacctcaccgctgcg 259389
>gb|AY111882.1| Zea mays CL56202_1 mRNA sequence Length = 697 Score = 44.1 bits (22), Expect = 0.47 Identities = 40/46 (86%) Strand = Plus / Minus Query: 377 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 422 |||||||||||||| | | |||||||||||||| |||||||||| Sbjct: 46 aggatgaagtagtaacgagaatagaggagaggatatctgcttggac 1
>ref|XM_761971.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_41_10839_11444) partial mRNA Length = 606 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 gatagaggagaggattgctgc 416 ||||||||||||||||||||| Sbjct: 381 gatagaggagaggattgctgc 401
>gb|L76354.1|AGG18SRA Argas lahorensis 18S ribosomal RNA (18S rRNA) gene Length = 1789 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 aagcgtcgccggccgtagccg 170 ||||||||||||||||||||| Sbjct: 284 aagcgtcgccggccgtagccg 264
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 10821565 ctttccctcctcctcatcctc 10821585
>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20, complete sequence Length = 84687 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 atggctctttccctcctcctc 105 ||||||||||||||||||||| Sbjct: 73055 atggctctttccctcctcctc 73075
>dbj|AK121318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P04, full insert sequence Length = 3396 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 6 ctttccctcctcctcatcctc 26
>dbj|AK103843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J12, full insert sequence Length = 3462 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 6 ctttccctcctcctcatcctc 26
>dbj|AK100362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M12, full insert sequence Length = 4061 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 12 ctttccctcctcctcatcctc 32
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20, complete sequence Length = 154604 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 atggctctttccctcctcctc 105 ||||||||||||||||||||| Sbjct: 72532 atggctctttccctcctcctc 72512
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 10821264 ctttccctcctcctcatcctc 10821284
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ctttccctcctcctcatcctc 111 ||||||||||||||||||||| Sbjct: 87914 ctttccctcctcctcatcctc 87934
>ref|NM_113768.2| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT3G28480 mRNA, complete cds Length = 1205 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 285 aagcttgagaagtcaatggtggctgataatga 316
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gagtccattcaaatattaca 464 |||||||||||||||||||| Sbjct: 815075 gagtccattcaaatattaca 815056
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gagtccattcaaatattaca 464 |||||||||||||||||||| Sbjct: 814970 gagtccattcaaatattaca 814951
>gb|AE009032.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 58 of 256 of the complete sequence Length = 12075 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cctcatcctcgcgcttcacc 121 |||||||||||||||||||| Sbjct: 1153 cctcatcctcgcgcttcacc 1134
>gb|AF083675.1| Arabidopsis thaliana clone sps64 unknown mRNA Length = 585 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 274 aagcttgagaagtcaatggtggctgataatga 305
>ref|XM_541726.2| PREDICTED: Canis familiaris similar to pleckstrin homology domain containing, family F (with FYVE domain) member 1 (LOC484612), mRNA Length = 1013 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 ccctcctcctcatcctcgcgcttc 118 ||||||||||| |||||||||||| Sbjct: 826 ccctcctcctcctcctcgcgcttc 803
>gb|AC004869.1| Homo sapiens PAC clone RP4-732C22 from 7, complete sequence Length = 159044 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 aatgatagaggagaggattg 412 |||||||||||||||||||| Sbjct: 89534 aatgatagaggagaggattg 89553
>emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chromosome 6 Contains the OR2H1 gene for olfactory receptor, family 2, subfamily H, member 1, the UBDP1 pseudogene for ubiquitin D pseudogene 1, the MAS1L gene for MAS1 oncogene-like, the RPS17P1 pseudogene for ribosomal protein S17 pseudogene 1 and the DAQB-12N14.5 gene for a novel transcript, complete sequence Length = 89139 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 46473 attccctcccgttctcccct 46454
>emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chromosome 6, complete sequence Length = 112061 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 50256 attccctcccgttctcccct 50237
>emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chromosome 6 contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptor, family 12, subfamily D, member 2, family 11, subfamily A, member 1, family 10, subfamily C, member 1 and family 2, subfamily H, member 1, the OR12D1P pseudogene for olfactory receptor, family12, subfamily D, member 1, a diubiquitin pseudogene, the MRG gene for MAS-related G protein-coupled receptor MRG and a ribosomal protein S17 (RPS17) pseudogene, complete sequence Length = 112578 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 100941 attccctcccgttctcccct 100922
>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptor, family 12, subfamily D, member 2, family 11, subfamily A, member 1, family 10, subfamily C, member 1, family 2, subfamily H, member 1, the gene for MAS-related G protein-coupled receptor (MRG), the OR12D1P pseudogene for olfactory receptor, family 12, subfamily D, member 1, a diubiquitin pseudogene and a ribosomal protein S17 (RPS17) pseudogene, complete sequence Length = 133836 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 97608 attccctcccgttctcccct 97589
>emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chromosome 6, complete sequence Length = 159366 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 122414 attccctcccgttctcccct 122395
>gb|AC055733.16| Homo sapiens 3 BAC RP11-39E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193425 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gctctttccctcctcctcatcctc 111 |||||||||||||||||| ||||| Sbjct: 129951 gctctttccctcctcctcctcctc 129928
>emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chromosome 6, complete sequence Length = 123752 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 77057 attccctcccgttctcccct 77038
>emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chromosome 6, complete sequence Length = 81080 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 43462 attccctcccgttctcccct 43443
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cctcatcctcgcgcttcacc 121 |||||||||||||||||||| Sbjct: 625896 cctcatcctcgcgcttcacc 625877
>gb|AY065036.1| Arabidopsis thaliana AT3g28480/MFJ20_16 mRNA, complete cds Length = 1202 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 282 aagcttgagaagtcaatggtggctgataatga 313
>gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete sequence Length = 157533 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 caggatgaagtagtagcaat 395 |||||||||||||||||||| Sbjct: 140330 caggatgaagtagtagcaat 140311
>gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 15q21.3, complete sequence Length = 150294 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 caggatgaagtagtagcaat 395 |||||||||||||||||||| Sbjct: 112009 caggatgaagtagtagcaat 111990
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 accacatgatcgagctggcg 276 |||||||||||||||||||| Sbjct: 264795 accacatgatcgagctggcg 264814
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ctcccgttctcccctccatg 66 |||||||||||||||||||| Sbjct: 8206944 ctcccgttctcccctccatg 8206963
>emb|BX927133.5| Human DNA sequence from clone DAMA-61E19 on chromosome 6, complete sequence Length = 107459 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 91101 attccctcccgttctcccct 91082
>emb|BX825401.1|CNS0A6F3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1063 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 265 aagcttgagaagtcaatggtggctgataatga 296
>gb|AY088608.1| Arabidopsis thaliana clone 8330 mRNA, complete sequence Length = 1205 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 285 aagcttgagaagtcaatggtggctgataatga 316
>dbj|AB026644.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MFJ20 Length = 85430 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 81859 aagcttgagaagtcaatggtggctgataatga 81828
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ctcccgttctcccctccatg 66 |||||||||||||||||||| Sbjct: 39626 ctcccgttctcccctccatg 39645
>dbj|AK108317.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G10, full insert sequence Length = 1161 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tcctcctcatcctcgcgctt 117 |||||||||||||||||||| Sbjct: 31 tcctcctcatcctcgcgctt 50
>emb|AL136504.2|HS139I22 Homo sapiens chromosome 3 sequence from BAC 139I22 map 3q21 region D3S3607-D3S1587, complete sequence Length = 184983 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gctctttccctcctcctcatcctc 111 |||||||||||||||||| ||||| Sbjct: 107477 gctctttccctcctcctcctcctc 107454
>dbj|AP003038.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2342I9, complete sequence Length = 181452 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 ttcaaatattacattataagaatg 475 ||||||||||||||||||| |||| Sbjct: 73377 ttcaaatattacattataaaaatg 73354
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gagtccattcaaatattaca 464 |||||||||||||||||||| Sbjct: 815074 gagtccattcaaatattaca 815055
>gb|AC004175.1|AC004175 Homo sapiens clone UWGC:y19c116 from 6p21, complete sequence Length = 37041 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 21059 attccctcccgttctcccct 21078
>emb|AL035542.8|HS994E9 Human DNA sequence from clone RP5-994E9 on chromosome 6p21.31-22.2 Contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory receptors 12D2, 11A1, 10C1 and 2H1, olfactory receptor 12D1 pseudogene OR12D1P, a diubiquitin pseudogene, the MAS-related G protein-coupled receptor MRG gene, an RPS17 (40S ribosomal protein S17) pseudogene and GSSs, complete sequence Length = 114868 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 attccctcccgttctcccct 61 |||||||||||||||||||| Sbjct: 102824 attccctcccgttctcccct 102805
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcgtcgccggccgtagccgc 171 |||||||||||||||||||| Sbjct: 1872689 gcgtcgccggccgtagccgc 1872708
>gb|BT001114.1| Arabidopsis thaliana At3g28480/MFJ20_16 mRNA, complete cds Length = 951 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcttgagaagtcgatggtggcggacaatga 314 |||||||||||||| |||||||| || ||||| Sbjct: 259 aagcttgagaagtcaatggtggctgataatga 290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,111,849 Number of Sequences: 3902068 Number of extensions: 4111849 Number of successful extensions: 85326 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84624 Number of HSP's gapped (non-prelim): 700 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)