Clone Information

BLAST Search Result

Clone Name	bart33c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK069058.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	563	e-157
2	gb\|BT019245.1\| Zea mays clone Contig918.F mRNA sequence	426	e-116
3	ref\|NM_192601.1\| Oryza sativa (japonica cultivar-group), predic...	337	3e-89
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	337	3e-89
5	dbj\|AP003253.3\| Oryza sativa (japonica cultivar-group) genomic D...	337	3e-89
6	ref\|NM_185739.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.13
7	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
8	dbj\|AP004401.5\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
9	gb\|DQ491001.1\| Chlorella virus MT325 ctg_71 genomic sequence	44	0.52
10	gb\|BT014181.1\| Lycopersicon esculentum clone 133346R, mRNA sequence	44	0.52
11	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	44	0.52
12	emb\|AL050344.31\|HSJ799D16 Human DNA sequence from clone RP4-799D...	44	0.52
13	gb\|AF333038.2\| Streptomyces viridochromogenes Avilamycin A biosy...	44	0.52
14	ref\|XM_474274.1\| Oryza sativa (japonica cultivar-group), predic...	42	2.1
15	emb\|AL606619.3\|OSJN00032 Oryza sativa genomic DNA, chromosome 4,...	42	2.1
16	emb\|BX664616.16\| Zebrafish DNA sequence from clone DKEY-231P15 i...	42	2.1
17	gb\|AC016612.6\| Homo sapiens chromosome 5 clone CTD-2197M16, comp...	42	2.1
18	emb\|BX005102.6\| Zebrafish DNA sequence from clone CH211-105H13 i...	42	2.1
19	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
20	gb\|AC026201.3\|AC026201 Homo sapiens chromosome 11 clone RP11-546...	42	2.1
21	gb\|AC021998.4\|AC021998 Homo sapiens chromosome 11 clone RP11-116...	42	2.1
22	dbj\|AK120932.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
23	emb\|Z92815.1\|CEW01F3 Caenorhabditis elegans Cosmid W01F3, comple...	42	2.1
24	emb\|AL732340.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	42	2.1
25	dbj\|AP006215.1\| Homo sapiens genomic DNA, chromosome 11, clone:R...	42	2.1
26	ref\|NM_195629.1\| Oryza sativa (japonica cultivar-group) hypothet...	40	8.2
27	gb\|AY023487.1\| Oryza sativa microsatellite MRG5812 containing (T...	40	8.2
28	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	8.2
29	gb\|AC104284.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.2
30	gb\|BC071129.1\| Xenopus laevis hypothetical protein LOC443569, mR...	40	8.2
31	ref\|XM_417361.1\| PREDICTED: Gallus gallus similar to uncharacter...	40	8.2
32	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	8.2
33	gb\|AC116739.13\| Mus musculus chromosome 17, clone RP23-435B24, c...	40	8.2
34	gb\|AC133161.4\| Mus musculus BAC clone RP24-534C7 from chromosome...	40	8.2
35	gb\|AC127333.3\| Mus musculus BAC clone RP23-137F10 from 7, comple...	40	8.2
36	gb\|AC125213.3\| Mus musculus BAC clone RP23-136A14 from 7, comple...	40	8.2
37	ref\|NM_001008091.1\| Xenopus tropicalis rgs18 protein (rgs18), mRNA	40	8.2
38	gb\|BC081290.1\| Xenopus tropicalis rgs18 protein, mRNA (cDNA clon...	40	8.2
39	gb\|AC104518.5\| Mus Musculus Strain 129S6/SvEvTac chromosome 17 B...	40	8.2
40	emb\|X77458.1\|SCDNAJ S.coelicolor dnaK, grpE and dnaJ genes	40	8.2
41	emb\|BX640440.1\| Bordetella bronchiseptica strain RB50, complete ...	40	8.2
42	emb\|BX640426.1\| Bordetella parapertussis strain 12822, complete ...	40	8.2
43	emb\|BX572597.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	8.2
44	emb\|AL939117.1\|SCO939117 Streptomyces coelicolor A3(2) complete ...	40	8.2
45	emb\|AL669823.7\| Mouse DNA sequence from clone RP23-456O1 on chro...	40	8.2
46	gb\|BC098964.1\| Xenopus laevis hypothetical protein LOC443569, mR...	40	8.2
47	gb\|CP000239.1\| Synechococcus sp. JA-3-3Ab, complete genome	40	8.2
48	gb\|CP000138.1\| Rhizobium etli CFN 42 plasmid p42f, complete sequ...	40	8.2
49	gb\|AC021892.16\| Genomic sequence for Oryza sativa, Nipponbare st...	40	8.2
50	gb\|CP000264.1\| Jannaschia sp. CCS1, complete genome	40	8.2
51	gb\|AE016817.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.2
52	emb\|CR385804.1\| Gallus gallus finished cDNA, clone ChEST62g7	40	8.2
53	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
54	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
55	gb\|AC022350.2\|AC022350 Drosophila melanogaster, chromosome X, re...	40	8.2
56	gb\|AC012592.10\| Homo sapiens BAC clone RP11-381F16 from 2, compl...	40	8.2
57	emb\|AL928584.23\| Mouse DNA sequence from clone RP23-251I16 on ch...	40	8.2
58	gb\|AE005064.1\| Halobacterium sp. NRC-1 section 95 of 170 of the ...	40	8.2
59	ref\|NM_209122.1\| Eremothecium gossypii ADL327Wp (ADL327W), mRNA	40	8.2
60	gb\|AC110562.17\| Mus musculus chromosome 17, clone RP23-268M4, co...	40	8.2
61	gb\|AF155334.1\|AF155334 Oryza sativa NADP-specific isocitrate deh...	40	8.2
62	gb\|AE003503.4\| Drosophila melanogaster chromosome X, section 55 ...	40	8.2
63	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.2
64	gb\|U75436.1\|HSU75436 Halobacterium salinarium transducer HtB pro...	40	8.2

>dbj|AK069058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I01, full
           insert sequence
          Length = 1395

 Score =  563 bits (284), Expect = e-157
 Identities = 389/424 (91%)
 Strand = Plus / Plus

                                                                       
Query: 178 ggaggcgaagatgttctatggggcgatggtgtgggatccgtggctgatcgtggcgcagat 237
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 104 ggaggagaagatgttctatggggcgatggtgtgggatccgtggctgatcgtgtcgcagat 163

                                                                       
Query: 238 cgtctgcctgcagtgcctctactacctcgtgctcggcctcttcatggcgctcctcgtcgg 297
           ||| |||||||||||||||||||||||||  || |||||| |||||||||||||||||||
Sbjct: 164 cgtgtgcctgcagtgcctctactacctcgccctgggcctcctcatggcgctcctcgtcgg 223

                                                                       
Query: 298 cacccgcgtcccgcgcctcacgctcctctacctctttgacttcgccaccctcaccccgcg 357
           ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 224 cacccgcgtcccgcgcctcaccctcctctacctcttcgacttcgccacgctcaccccgcg 283

                                                                       
Query: 358 cacaaccaccggctggtgcgccatcgcctccttcctcctcgccgccatcgcgggtgctgg 417
           ||| |||||||| ||||||| ||||||| |||||||||||||||||  ||| ||||||| 
Sbjct: 284 caccaccaccggatggtgcgtcatcgccgccttcctcctcgccgccgccgccggtgctgc 343

                                                                       
Query: 418 attcatgttttatgtcattgagagagccaagaagtgcctggactttgcagccaccctcca 477
            |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 344 tttcatgctttatgtgattgagagagctaagaagtgcctggactttgcagccaccctcta 403

                                                                       
Query: 478 catcatccatctgtttatttgcattatttatggaggatggccagcttcaggtacatggtg 537
           |||||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct: 404 catcattcatctgtttatttgcattgtttatggtggatggccagcttcagttacatggtg 463

                                                                       
Query: 538 ggttgttaacattgttggtttggcaatcatgtccctccttggtgaatacctatgcatcag 597
           ||||||||| |||| ||||||||| || ||||| || ||||||||||||||||| || ||
Sbjct: 464 ggttgttaatattgctggtttggcgattatgtctcttcttggtgaatacctatgtataag 523

               
Query: 598 gcgg 601
           ||||
Sbjct: 524 gcgg 527

to top

>gb|BT019245.1| Zea mays clone Contig918.F mRNA sequence
          Length = 1184

 Score =  426 bits (215), Expect = e-116
 Identities = 368/419 (87%)
 Strand = Plus / Minus

                                                                       
Query: 183 cgaagatgttctatggggcgatggtgtgggatccgtggctgatcgtggcgcagatcgtct 242
           ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 932 cgaagatgttctatggggccatggtttgggatccgtggctgatcgtgtcgcagatcgtgt 873

                                                                       
Query: 243 gcctgcagtgcctctactacctcgtgctcggcctcttcatggcgctcctcgtcggcaccc 302
           ||||||||||||||||||||||   ||| ||| ||  |||||||||||||||||||||||
Sbjct: 872 gcctgcagtgcctctactacctgtcgctgggcgtcgccatggcgctcctcgtcggcaccc 813

                                                                       
Query: 303 gcgtcccgcgcctcacgctcctctacctctttgacttcgccaccctcaccccgcgcacaa 362
           |||||||||| ||||| || |||||| |||| ||||||||||| ||||||||||||||  
Sbjct: 812 gcgtcccgcgactcacccttctctacttcttcgacttcgccacgctcaccccgcgcaccc 753

                                                                       
Query: 363 ccaccggctggtgcgccatcgcctccttcctcctcgccgccatcgcgggtgctggattca 422
           |||| || |||||||||||||| || ||| | || |||||  |||| |||||||| ||||
Sbjct: 752 ccacgggttggtgcgccatcgcatcattcattcttgccgctgtcgcaggtgctgggttca 693

                                                                       
Query: 423 tgttttatgtcattgagagagccaagaagtgcctggactttgcagccaccctccacatca 482
           || ||||||| ||||||||||||||||||||||||||||||||||| || ||| |||| |
Sbjct: 692 tgctttatgtgattgagagagccaagaagtgcctggactttgcagcaacactctacataa 633

                                                                       
Query: 483 tccatctgtttatttgcattatttatggaggatggccagcttcaggtacatggtgggttg 542
           ||||||| || ||||||||| ||||||| ||||||||||||||   ||||||||||||||
Sbjct: 632 tccatctcttcatttgcattgtttatggtggatggccagcttccattacatggtgggttg 573

                                                                      
Query: 543 ttaacattgttggtttggcaatcatgtccctccttggtgaatacctatgcatcaggcgg 601
           |||| ||   |||||||||||||||| | ||||| |||||||||||||||||| |||||
Sbjct: 572 ttaatatcactggtttggcaatcatggctctcctaggtgaatacctatgcatccggcgg 514

to top

>ref|NM_192601.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 366

 Score =  337 bits (170), Expect = 3e-89
 Identities = 212/226 (93%)
 Strand = Plus / Plus

                                                                       
Query: 178 ggaggcgaagatgttctatggggcgatggtgtgggatccgtggctgatcgtggcgcagat 237
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 129 ggaggagaagatgttctatggggcgatggtgtgggatccgtggctgatcgtgtcgcagat 188

                                                                       
Query: 238 cgtctgcctgcagtgcctctactacctcgtgctcggcctcttcatggcgctcctcgtcgg 297
           ||| |||||||||||||||||||||||||  || |||||| |||||||||||||||||||
Sbjct: 189 cgtgtgcctgcagtgcctctactacctcgccctgggcctcctcatggcgctcctcgtcgg 248

                                                                       
Query: 298 cacccgcgtcccgcgcctcacgctcctctacctctttgacttcgccaccctcaccccgcg 357
           ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 249 cacccgcgtcccgcgcctcaccctcctctacctcttcgacttcgccacgctcaccccgcg 308

                                                         
Query: 358 cacaaccaccggctggtgcgccatcgcctccttcctcctcgccgcc 403
           ||| |||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 309 caccaccaccggatggtgcgtcatcgccgccttcctcctcgccgcc 354

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  337 bits (170), Expect = 3e-89
 Identities = 212/226 (93%)
 Strand = Plus / Plus

                                                                            
Query: 178      ggaggcgaagatgttctatggggcgatggtgtgggatccgtggctgatcgtggcgcagat 237
                ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 23236131 ggaggagaagatgttctatggggcgatggtgtgggatccgtggctgatcgtgtcgcagat 23236190

                                                                            
Query: 238      cgtctgcctgcagtgcctctactacctcgtgctcggcctcttcatggcgctcctcgtcgg 297
                ||| |||||||||||||||||||||||||  || |||||| |||||||||||||||||||
Sbjct: 23236191 cgtgtgcctgcagtgcctctactacctcgccctgggcctcctcatggcgctcctcgtcgg 23236250

                                                                            
Query: 298      cacccgcgtcccgcgcctcacgctcctctacctctttgacttcgccaccctcaccccgcg 357
                ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 23236251 cacccgcgtcccgcgcctcaccctcctctacctcttcgacttcgccacgctcaccccgcg 23236310

                                                              
Query: 358      cacaaccaccggctggtgcgccatcgcctccttcctcctcgccgcc 403
                ||| |||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 23236311 caccaccaccggatggtgcgtcatcgccgccttcctcctcgccgcc 23236356



 Score =  236 bits (119), Expect = 7e-59
 Identities = 167/183 (91%)
 Strand = Plus / Plus

                                                                            
Query: 419      ttcatgttttatgtcattgagagagccaagaagtgcctggactttgcagccaccctccac 478
                |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 23237291 ttcatgctttatgtgattgagagagctaagaagtgcctggactttgcagccaccctctac 23237350

                                                                            
Query: 479      atcatccatctgtttatttgcattatttatggaggatggccagcttcaggtacatggtgg 538
                ||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 23237351 atcattcatctgtttatttgcattgtttatggtggatggccagcttcagttacatggtgg 23237410

                                                                            
Query: 539      gttgttaacattgttggtttggcaatcatgtccctccttggtgaatacctatgcatcagg 598
                |||||||| |||| ||||||||| || ||||| || ||||||||||||||||| || |||
Sbjct: 23237411 gttgttaatattgctggtttggcgattatgtctcttcttggtgaatacctatgtataagg 23237470

                   
Query: 599      cgg 601
                |||
Sbjct: 23237471 cgg 23237473

to top

>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score =  337 bits (170), Expect = 3e-89
 Identities = 212/226 (93%)
 Strand = Plus / Plus

                                                                         
Query: 178   ggaggcgaagatgttctatggggcgatggtgtgggatccgtggctgatcgtggcgcagat 237
             ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 22873 ggaggagaagatgttctatggggcgatggtgtgggatccgtggctgatcgtgtcgcagat 22932

                                                                         
Query: 238   cgtctgcctgcagtgcctctactacctcgtgctcggcctcttcatggcgctcctcgtcgg 297
             ||| |||||||||||||||||||||||||  || |||||| |||||||||||||||||||
Sbjct: 22933 cgtgtgcctgcagtgcctctactacctcgccctgggcctcctcatggcgctcctcgtcgg 22992

                                                                         
Query: 298   cacccgcgtcccgcgcctcacgctcctctacctctttgacttcgccaccctcaccccgcg 357
             ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 22993 cacccgcgtcccgcgcctcaccctcctctacctcttcgacttcgccacgctcaccccgcg 23052

                                                           
Query: 358   cacaaccaccggctggtgcgccatcgcctccttcctcctcgccgcc 403
             ||| |||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 23053 caccaccaccggatggtgcgtcatcgccgccttcctcctcgccgcc 23098



 Score =  236 bits (119), Expect = 7e-59
 Identities = 167/183 (91%)
 Strand = Plus / Plus

                                                                         
Query: 419   ttcatgttttatgtcattgagagagccaagaagtgcctggactttgcagccaccctccac 478
             |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 24033 ttcatgctttatgtgattgagagagctaagaagtgcctggactttgcagccaccctctac 24092

                                                                         
Query: 479   atcatccatctgtttatttgcattatttatggaggatggccagcttcaggtacatggtgg 538
             ||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 24093 atcattcatctgtttatttgcattgtttatggtggatggccagcttcagttacatggtgg 24152

                                                                         
Query: 539   gttgttaacattgttggtttggcaatcatgtccctccttggtgaatacctatgcatcagg 598
             |||||||| |||| ||||||||| || ||||| || ||||||||||||||||| || |||
Sbjct: 24153 gttgttaatattgctggtttggcgattatgtctcttcttggtgaatacctatgtataagg 24212

                
Query: 599   cgg 601
             |||
Sbjct: 24213 cgg 24215

to top

>ref|NM_185739.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1986

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 98  cgctcctcgcccgcctccccggcgacctcag 128
           ||||||||| |||||||| ||||||||||||
Sbjct: 608 cgctcctcgaccgcctcctcggcgacctcag 638

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 98       cgctcctcgcccgcctccccggcgacctcag 128
                ||||||||| |||||||| ||||||||||||
Sbjct: 21700881 cgctcctcgaccgcctcctcggcgacctcag 21700911

to top

>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 98    cgctcctcgcccgcctccccggcgacctcag 128
             ||||||||| |||||||| ||||||||||||
Sbjct: 18064 cgctcctcgaccgcctcctcggcgacctcag 18094

to top

>gb|DQ491001.1| Chlorella virus MT325 ctg_71 genomic sequence
          Length = 314335

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 502    tatttatggaggatggccagcttcag 527
              ||||||||||||||||||||| ||||
Sbjct: 298658 tatttatggaggatggccagcatcag 298633

to top

>gb|BT014181.1| Lycopersicon esculentum clone 133346R, mRNA sequence
          Length = 1384

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 88/110 (80%)
 Strand = Plus / Plus

                                                                       
Query: 434 attgagagagccaagaagtgcctggactttgcagccaccctccacatcatccatctgttt 493
           |||||||| || ||||||||| | || ||| |||| || ||  ||||| | ||||| || 
Sbjct: 498 attgagagggcaaagaagtgcttagatttttcagcaacactttacatcgtacatctttta 557

                                                             
Query: 494 atttgcattatttatggaggatggccagcttcaggtacatggtgggttgt 543
           || || ||||| |||||||| |||||  |||||  |||||||||||||||
Sbjct: 558 atatgtattatctatggaggctggccttcttcaattacatggtgggttgt 607

to top

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 394     cctcgccgccatcgcgggtgctggat 419
               ||||||||||||||| ||||||||||
Sbjct: 1498924 cctcgccgccatcgctggtgctggat 1498899

to top

>emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D16 on chromosome 1p34.3-36.1
             Contains the 3' end of a novel gene, complete sequence
          Length = 127109

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    ccagcagcagagagaagcaacc 41
             ||||||||||||||||||||||
Sbjct: 71877 ccagcagcagagagaagcaacc 71856

to top

>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene
            cluster, complete sequence
          Length = 59816

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 102  cctcgcccgcctccccggcgac 123
            ||||||||||||||||||||||
Sbjct: 7554 cctcgcccgcctccccggcgac 7533

to top

>ref|XM_474274.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 207

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 390 tcctcctcgccgccatcgcgg 410
           |||||||||||||||||||||
Sbjct: 29  tcctcctcgccgccatcgcgg 49

to top

>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 390   tcctcctcgccgccatcgcgg 410
             |||||||||||||||||||||
Sbjct: 50045 tcctcctcgccgccatcgcgg 50025

to top

>emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 in linkage group 8,
              complete sequence
          Length = 193090

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 487    tctgtttatttgcattattta 507
              |||||||||||||||||||||
Sbjct: 103089 tctgtttatttgcattattta 103109

to top

>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   gcctggactttgcagccaccc 473
             |||||||||||||||||||||
Sbjct: 35999 gcctggactttgcagccaccc 36019

to top

>emb|BX005102.6| Zebrafish DNA sequence from clone CH211-105H13 in linkage group 8,
             complete sequence
          Length = 154770

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 487   tctgtttatttgcattattta 507
             |||||||||||||||||||||
Sbjct: 36031 tctgtttatttgcattattta 36011

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 390      tcctcctcgccgccatcgcgg 410
                |||||||||||||||||||||
Sbjct: 34138663 tcctcctcgccgccatcgcgg 34138643

to top

>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence
          Length = 202218

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 463    tgcagccaccctccacatcat 483
              |||||||||||||||||||||
Sbjct: 156167 tgcagccaccctccacatcat 156147

to top

>gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11, complete sequence
          Length = 142446

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   tgcagccaccctccacatcat 483
             |||||||||||||||||||||
Sbjct: 78585 tgcagccaccctccacatcat 78605

to top

>dbj|AK120932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036D13, full
           insert sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 390 tcctcctcgccgccatcgcgg 410
           |||||||||||||||||||||
Sbjct: 115 tcctcctcgccgccatcgcgg 135

to top

>emb|Z92815.1|CEW01F3 Caenorhabditis elegans Cosmid W01F3, complete sequence
          Length = 32797

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 448   gaagtgcctggactttgcagccacc 472
             |||||| ||||||||||||||||||
Sbjct: 23396 gaagtggctggactttgcagccacc 23372

to top

>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 390   tcctcctcgccgccatcgcgg 410
             |||||||||||||||||||||
Sbjct: 55750 tcctcctcgccgccatcgcgg 55730

to top

>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete
              sequence
          Length = 189310

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    tgcagccaccctccacatcat 483
              |||||||||||||||||||||
Sbjct: 164621 tgcagccaccctccacatcat 164641

to top

>ref|NM_195629.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0053D03.28), mRNA
          Length = 2736

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 cctccttcctcctcgccgcc 403
           ||||||||||||||||||||
Sbjct: 109 cctccttcctcctcgccgcc 128

to top

>gb|AY023487.1| Oryza sativa microsatellite MRG5812 containing (TCT)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tcctcctcgccgccatcgcg 409
           ||||||||||||||||||||
Sbjct: 148 tcctcctcgccgccatcgcg 167

to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 218     tggctgatcgtggcgcagatcgtc 241
               |||| |||||||||||||||||||
Sbjct: 3543416 tggccgatcgtggcgcagatcgtc 3543393

to top

>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    tcctcctcgccgccatcgcg 409
              ||||||||||||||||||||
Sbjct: 111521 tcctcctcgccgccatcgcg 111540

to top

>gb|BC071129.1| Xenopus laevis hypothetical protein LOC443569, mRNA (cDNA clone
            IMAGE:6636682), partial cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ttccagcagcagagagaagc 37
            ||||||||||||||||||||
Sbjct: 1655 ttccagcagcagagagaagc 1674

to top

>ref|XM_417361.1| PREDICTED: Gallus gallus similar to uncharacterized hypothalamus
           protein HSMNP1 (LOC419183), mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 206 gtgtgggatccgtggctgatcgtggcgcagat 237
           |||||||| |||  ||||||||||||||||||
Sbjct: 41  gtgtgggacccggcgctgatcgtggcgcagat 72

to top

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 218     tggctgatcgtggcgcagatcgtc 241
               |||| |||||||||||||||||||
Sbjct: 2794916 tggccgatcgtggcgcagatcgtc 2794939

to top

>gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, complete sequence
          Length = 222382

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ctgcagtgcctctactacct 264
              ||||||||||||||||||||
Sbjct: 144343 ctgcagtgcctctactacct 144362

to top

>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cctcacgctcctctacctct 332
             ||||||||||||||||||||
Sbjct: 89597 cctcacgctcctctacctct 89578

to top

>gb|AC127333.3| Mus musculus BAC clone RP23-137F10 from 7, complete sequence
          Length = 185795

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   tgtttatttgcattatttat 508
             ||||||||||||||||||||
Sbjct: 16448 tgtttatttgcattatttat 16429

to top

>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence
          Length = 194309

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   tgtttatttgcattatttat 508
             ||||||||||||||||||||
Sbjct: 21513 tgtttatttgcattatttat 21532

to top

>ref|NM_001008091.1| Xenopus tropicalis rgs18 protein (rgs18), mRNA
          Length = 1598

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 atcatccatctgtttatttg 498
           ||||||||||||||||||||
Sbjct: 532 atcatccatctgtttatttg 513

to top

>gb|BC081290.1| Xenopus tropicalis rgs18 protein, mRNA (cDNA clone MGC:89051
           IMAGE:7005530), complete cds
          Length = 1598

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 atcatccatctgtttatttg 498
           ||||||||||||||||||||
Sbjct: 532 atcatccatctgtttatttg 513

to top

>gb|AC104518.5| Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC, RP22-187D17,
             Complete Sequence, complete sequence
          Length = 163367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ctgcagtgcctctactacct 264
             ||||||||||||||||||||
Sbjct: 71524 ctgcagtgcctctactacct 71505

to top

>emb|X77458.1|SCDNAJ S.coelicolor dnaK, grpE and dnaJ genes
          Length = 5611

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 376 cgccatcgcctccttcctcctcgccgcc 403
           ||||| |||||||||||||||| |||||
Sbjct: 583 cgccaccgcctccttcctcctcaccgcc 610

to top

>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    cgcgcacaaccaccggctgg 373
              ||||||||||||||||||||
Sbjct: 249586 cgcgcacaaccaccggctgg 249567

to top

>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   cgcgcacaaccaccggctgg 373
             ||||||||||||||||||||
Sbjct: 18644 cgcgcacaaccaccggctgg 18625

to top

>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    actacctcgtgctcggcctc 277
              ||||||||||||||||||||
Sbjct: 157977 actacctcgtgctcggcctc 157958

to top

>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 376    cgccatcgcctccttcctcctcgccgcc 403
              ||||| |||||||||||||||| |||||
Sbjct: 136036 cgccaccgcctccttcctcctcaccgcc 136009

to top

>emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chromosome 11 Contains a
              novel gene and the 5' end of a novel gene, complete
              sequence
          Length = 197012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 447    agaagtgcctggactttgcagcca 470
              |||||||||||| |||||||||||
Sbjct: 138786 agaagtgcctggtctttgcagcca 138809

to top

>gb|BC098964.1| Xenopus laevis hypothetical protein LOC443569, mRNA (cDNA clone
            MGC:114690 IMAGE:6318516), complete cds
          Length = 2783

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ttccagcagcagagagaagc 37
            ||||||||||||||||||||
Sbjct: 1381 ttccagcagcagagagaagc 1400

to top

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 360     caaccaccggctggtgcgccatcg 383
               ||||||||||||||| ||||||||
Sbjct: 2297829 caaccaccggctggtacgccatcg 2297852

to top

>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    gctcggcctcttcatggcgc 287
              ||||||||||||||||||||
Sbjct: 580773 gctcggcctcttcatggcgc 580792

to top

>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0053D03, from chromosome 10, complete sequence
          Length = 199113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    cctccttcctcctcgccgcc 403
              ||||||||||||||||||||
Sbjct: 139167 cctccttcctcctcgccgcc 139186

to top

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    tcgtcggcacccgcgtcccgcgcc 314
              |||||||||||| |||||||||||
Sbjct: 830822 tcgtcggcacccccgtcccgcgcc 830845

to top

>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    cgtgctcggcctcttcatgg 284
              ||||||||||||||||||||
Sbjct: 124601 cgtgctcggcctcttcatgg 124582

to top

>emb|CR385804.1| Gallus gallus finished cDNA, clone ChEST62g7
          Length = 1099

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 206 gtgtgggatccgtggctgatcgtggcgcagat 237
           |||||||| |||  ||||||||||||||||||
Sbjct: 41  gtgtgggacccggcgctgatcgtggcgcagat 72

to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     cctccttcctcctcgccgcc 403
               ||||||||||||||||||||
Sbjct: 8117312 cctccttcctcctcgccgcc 8117293

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 390      tcctcctcgccgccatcgcg 409
                ||||||||||||||||||||
Sbjct: 28327279 tcctcctcgccgccatcgcg 28327298

to top

>gb|AC022350.2|AC022350 Drosophila melanogaster, chromosome X, region 15B-15B, BAC clone
             BACR18G21, complete sequence
          Length = 168514

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   tttatttgcattatttatgg 510
             ||||||||||||||||||||
Sbjct: 95687 tttatttgcattatttatgg 95668

to top

>gb|AC012592.10| Homo sapiens BAC clone RP11-381F16 from 2, complete sequence
          Length = 155682

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   gtgctggattcatgttttat 430
             ||||||||||||||||||||
Sbjct: 54562 gtgctggattcatgttttat 54543

to top

>emb|AL928584.23| Mouse DNA sequence from clone RP23-251I16 on chromosome 4, complete
             sequence
          Length = 118310

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   cttcaggtacatggtgggtt 541
             ||||||||||||||||||||
Sbjct: 13520 cttcaggtacatggtgggtt 13539

to top

>gb|AE005064.1| Halobacterium sp. NRC-1 section 95 of 170 of the complete genome
          Length = 17685

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   cctcgcccgcctccccggcg 121
             ||||||||||||||||||||
Sbjct: 13253 cctcgcccgcctccccggcg 13272

to top

>ref|NM_209122.1| Eremothecium gossypii ADL327Wp (ADL327W), mRNA
          Length = 918

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 cgtgctcggcctcttcatgg 284
           ||||||||||||||||||||
Sbjct: 751 cgtgctcggcctcttcatgg 732

to top

>gb|AC110562.17| Mus musculus chromosome 17, clone RP23-268M4, complete sequence
          Length = 165190

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ctgcagtgcctctactacct 264
              ||||||||||||||||||||
Sbjct: 159882 ctgcagtgcctctactacct 159863

to top

>gb|AF155334.1|AF155334 Oryza sativa NADP-specific isocitrate dehydrogenase mRNA, complete
           cds
          Length = 1503

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tcctcctcgccgccatcgcg 409
           ||||||||||||||||||||
Sbjct: 35  tcctcctcgccgccatcgcg 54

to top

>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete
             sequence
          Length = 300468

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   tttatttgcattatttatgg 510
             ||||||||||||||||||||
Sbjct: 80126 tttatttgcattatttatgg 80107

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     cctccttcctcctcgccgcc 403
               ||||||||||||||||||||
Sbjct: 8122411 cctccttcctcctcgccgcc 8122392

to top

>gb|U75436.1|HSU75436 Halobacterium salinarium transducer HtB protein (HtB) gene, complete
            cds
          Length = 1700

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  cctcgcccgcctccccggcg 121
            ||||||||||||||||||||
Sbjct: 1139 cctcgcccgcctccccggcg 1120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,823,665
Number of Sequences: 3902068
Number of extensions: 4823665
Number of successful extensions: 114149
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113333
Number of HSP's gapped (non-prelim): 815
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result