Clone Name | bart33b11 |
---|---|
Clone Library Name | barley_pub |
>ZAN_RABIT (P57999) Zonadhesin (Fragment)| Length = 2282 Score = 34.3 bits (77), Expect = 0.23 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Frame = -1 Query: 455 TMEGALPLRANCLTWGCPVLPTH-PTMALEPTMRPSLEKAIPTHPELYIAESTT-----R 294 T + +P + P +PT PT+A EP P+ E + T E TT R Sbjct: 407 TEKPTVPTEETSIPTEPPTVPTEKPTVATEPPTVPTEEPTVATEKPTVPTEETTPPTTAR 466 Query: 293 STLS---PPCAYRSTKLFQTGLQASPE*LPTSSGGSASSQLPVCA 168 STL+ P ST L T L + PT+ A++ CA Sbjct: 467 STLTSLEPTTHTPSTSLTSTTLSTTTTPSPTTVSCPANAHYESCA 511
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.3 bits (72), Expect = 0.86 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = -3 Query: 405 PRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQH 289 P + +H HHE E H H P H HHP H Sbjct: 72 PHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPH 110
>RIBD_CHLMU (Q9PLJ6) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 371 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 328 WVGMAFSKDGLMVGSSAMVGWVGKTGQPHVKQFALNGKAPSMVVAD 465 WVG K+G ++G GW G PH + A + S+V AD Sbjct: 31 WVGCVIVKNGCIIGR----GWHKGIGSPHAEVCAFQDQTSSLVGAD 72
>CD008_MOUSE (Q8CGI1) Protein C4orf008 homolog (Fragment)| Length = 944 Score = 31.6 bits (70), Expect = 1.5 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Frame = -1 Query: 470 PLSATTMEGALPLRANCLTWGCPVLPTHPTMALEPTMR--------PSLEKAIPTHPELY 315 P SA T GALP L+ P PTHP + L P + P L + + HP LY Sbjct: 423 PASAMTA-GALPPGHQFLS---PEKPTHPALHLYPHIHGHVPLHTVPHLPRPL-IHPTLY 477 Query: 314 IAESTTRSTLSPPCAYRS 261 A T S PP +S Sbjct: 478 PAPPFTHSKALPPAPVQS 495
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 31.2 bits (69), Expect = 1.9 Identities = 29/103 (28%), Positives = 41/103 (39%) Frame = -3 Query: 468 PVGDDHGGRLAVEGELLDVGLPRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQH 289 P G G + GE GLP + PP G R H + G PPGAV + Sbjct: 644 PPGSGEKGDRGIAGEQGPQGLPGVPGPP--GLRGHSGS---PGPQGPPGAVGPQGLRGDV 698 Query: 288 VVPALRVPEHEVIPDGAAGQPGVVADELGRQRVVAAAGLRRHP 160 +P ++ + + P G G G E G + + G+R P Sbjct: 699 GLPGVKGDKGLMGPPGPKGDQG----EKGPRGLTGEPGIRGLP 737
>BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog| Length = 233 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/53 (37%), Positives = 23/53 (43%) Frame = -3 Query: 447 GRLAVEGELLDVGLPRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQH 289 G LA LLD G P + P L HPHP A+H+ EHH H Sbjct: 43 GSLASRVPLLDYGYPLMPAP-----------ALLAPHPHP--ALHKPEHHHHH 82
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +2 Query: 209 SSATTPGWPAAPSGITSCSGTRRAGTTCCGWCSRRCTAPGGWGWPSPRTASWWARAP 379 S+ TPGW T+ + T TT + C PG +G P T + AP Sbjct: 488 STCKTPGWWGCLDESTTTTTTTSTTTTTTTTTTSTCKTPGWFGCKDPTTTTEATAAP 544
>TEP1_MOUSE (P97499) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 homolog) Length = 2629 Score = 30.8 bits (68), Expect = 2.5 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Frame = +1 Query: 328 WV-GMAFSKDGLMVGSSA--MVG-WVGKTGQPHVKQFALNGKAPSMVVADRGFLVSNNRD 495 W+ G A++KD ++V S+ VG W + GQ + QF+ + A S VVA +VS +RD Sbjct: 2117 WITGCAWTKDNILVSCSSDGSVGLWNPEAGQ-QLGQFSGHQSAVSAVVAVEEHIVSVSRD 2175 Query: 496 HTVLV 510 T+ V Sbjct: 2176 GTLKV 2180
>UNG_LACAC (Q5FL46) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 232 Score = 30.4 bits (67), Expect = 3.3 Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 25/130 (19%) Frame = +1 Query: 196 LPPELVGNYSGL----ACSPVWNNFVLRYAQGGDNVLRVVLSAMYS-------SGWVGM- 339 LPP L Y L PV + ++ ++A G +L VL+ Y GW + Sbjct: 87 LPPSLRNIYKELYDDVGAIPVNHGYLKKWADQGVLLLNAVLTVPYGHANGHQGKGWEDVT 146 Query: 340 -----AFSKDGLMVGSSAMVGWVGKTGQPHV------KQFALNGKAPSMVVADRGFLVSN 486 A SK G +V + W G+ Q + K F + PS ADRGF S Sbjct: 147 DAAIKALSKRGKVV----FILW-GRFAQNKIPLIDQSKNFIIKSSHPSPFSADRGFFGSR 201 Query: 487 --NRDHTVLV 510 +R +T L+ Sbjct: 202 PFSRCNTALI 211
>SYI_LACJO (Q74JX6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 928 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Frame = +1 Query: 301 VLSAMYSSG--WVGMAFSKDGL-------MVGSSAMVGWVGKTGQPHVKQFALNGKAPSM 453 +L + SG W G+ +DGL + GS GW + + A+ GKAP Sbjct: 524 ILDVWFDSGSSWAGVMQERDGLGFPADLYLEGSDQYRGWFNSS---LITSVAVTGKAPYK 580 Query: 454 VVADRGFLVSN 486 V +GF++ + Sbjct: 581 QVLSQGFVLDD 591
>REGB_PSEAE (Q03381) Protein regB| Length = 75 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = +2 Query: 215 ATTPGWPAAPSGIT--SCSGT-RRAGTTCC-----GWCSRRCTAPGGWGWPSPRT 355 A TPGWPA P G T G RR+ T CSR +A +GW + T Sbjct: 5 AVTPGWPAIPPGATLGGFDGQGRRSWATISRAPSGASCSRNRSATRTYGWGATAT 59
>TLL_DROVI (O16845) Protein tailless| Length = 450 Score = 30.0 bits (66), Expect = 4.3 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Frame = -3 Query: 411 GLPRLADPPNHGARAHHEAVLGEGHPHPPGA------VHRREHHPQH 289 G P L P R+HH A L PP A V R HHP H Sbjct: 150 GFPGLPMPMPGVQRSHHHAALSAAFQPPPSAAVLDLSVPRVPHHPVH 196
>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I| Length = 638 Score = 30.0 bits (66), Expect = 4.3 Identities = 22/91 (24%), Positives = 41/91 (45%) Frame = -1 Query: 497 WSRLLETRNPLSATTMEGALPLRANCLTWGCPVLPTHPTMALEPTMRPSLEKAIPTHPEL 318 + +LL +N L A + A P ++ T V +++ P M+PS+ IPT P Sbjct: 252 YDQLLAIKNQL-AQLEKPASPSTSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSA 310 Query: 317 YIAESTTRSTLSPPCAYRSTKLFQTGLQASP 225 Y A +++ L+ + + + L + P Sbjct: 311 YSASVSSQPPLTHSYVHPGPQSHKYSLSSGP 341
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 29.6 bits (65), Expect = 5.6 Identities = 27/101 (26%), Positives = 40/101 (39%) Frame = -3 Query: 462 GDDHGGRLAVEGELLDVGLPRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQHVV 283 G+ HG R V + + +PRLA P+ G + GE P P R Sbjct: 35 GERHGRRKVVVAAISEE-VPRLAASPSSGIKG---GGAGERRPAPEKVALR-------AA 83 Query: 282 PALRVPEHEVIPDGAAGQPGVVADELGRQRVVAAAGLRRHP 160 +R + E I + AG + D +GR V+ + HP Sbjct: 84 LTVRRKQKEDIKEAVAGHLDALWDMVGRNVVLELISTKIHP 124
>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 616 Score = 29.6 bits (65), Expect = 5.6 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = -1 Query: 356 PSLEKAIPTHPELYIAESTTRSTLSPPCAYRSTKLFQTGLQASPE*LPTSSGGSASSQLP 177 P+ A + P+ S ST+S AY ++K F G A P L +SGG+ S +P Sbjct: 132 PAASPAASSRPQPQNGTSGAGSTVSK--AYGASKTF--GKAAGPS-LSHNSGGTQSKVVP 186 Query: 176 VCAVTP 159 + ++TP Sbjct: 187 IASLTP 192
>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 616 Score = 29.6 bits (65), Expect = 5.6 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = -1 Query: 356 PSLEKAIPTHPELYIAESTTRSTLSPPCAYRSTKLFQTGLQASPE*LPTSSGGSASSQLP 177 P+ A + P+ S ST+S AY ++K F G A P L +SGG+ S +P Sbjct: 132 PAASPAASSRPQPQNGSSGMGSTVSK--AYGASKTF--GKAAGPS-LSHTSGGTQSKVVP 186 Query: 176 VCAVTP 159 + ++TP Sbjct: 187 IASLTP 192
>SYI_LACAC (Q5FKU5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 927 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Frame = +1 Query: 301 VLSAMYSSG--WVGMAFSKDGL-------MVGSSAMVGWVGKTGQPHVKQFALNGKAPSM 453 +L + SG W G+ +DGL + GS GW + + A+ GKAP Sbjct: 523 ILDVWFDSGSSWSGVMEKRDGLHYPADLYLEGSDQYRGWFNSS---LITSVAVTGKAPYK 579 Query: 454 VVADRGFLVSN 486 V +GF++ + Sbjct: 580 EVLSQGFVLDD 590
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 29.3 bits (64), Expect = 7.3 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 14/94 (14%) Frame = -1 Query: 404 PVLPTHPTMALEPT-MRPSL-EKAIPT----------HPELYIAESTTR--STLSPPCAY 267 PVLP P + + P ++P L E+A P HP Y + + + PP A Sbjct: 990 PVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAPYAVDVAAQVPTVPVPPAAV 1049 Query: 266 RSTKLFQTGLQASPE*LPTSSGGSASSQLPVCAV 165 S L + L A+PE LP A+ V +V Sbjct: 1050 LSPPLPEVLLPAAPELLPQFPSSLATVSASVQSV 1083
>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 817 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = +2 Query: 242 PSGITSCSGTRRAGTTCCGWCSRRCTAPGGWGWPSP 349 P G + G R CCG CS R A WG P P Sbjct: 31 PDGRSRRGGGRSFWARCCGCCSCRNAADDDWG-PEP 65
>PACC_USTMA (Q6H8R9) pH-response transcription factor pacC/RIM101| Length = 791 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Frame = -1 Query: 461 ATTMEGALP----LRANCLTWGCPVLPTHPTMALEPTMRPSLEKAIPTHPELYIAESTTR 294 AT GA P L A G P LPT + + PS ++P + + A ST Sbjct: 181 ATAFGGAYPYPPQLHAANAYLGYPQLPTQHGLYPSASTYPSAYPSLPPTSDYHYAHSTPS 240 Query: 293 STLSP 279 ++LSP Sbjct: 241 ASLSP 245
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%) Frame = +3 Query: 354 RPHGGLERHGWVGRQD-----GAAPRQAVRPQRQGALHGRR 461 +P GGLE G GRQD P++A P+RQ + RR Sbjct: 1242 KPEGGLEGGGPRGRQDYDRSKSTHPQRATLPRRQTSPQARR 1282
>XYL2_PICST (P22144) D-xylulose reductase (EC 1.1.1.9) (Xylitol dehydrogenase)| (XDH) Length = 363 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -3 Query: 345 EGHPHPPGAVHRREHHPQHVVPALRVPEHEVIPDGAAGQP---GVVADELG 202 EG P+PPG + + P+ + +++P+H + GA +P GV A +LG Sbjct: 123 EGEPNPPGTLCKYFKSPEDFL--VKLPDHVSLELGALVEPLSVGVHASKLG 171
>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein| roller-5) Length = 324 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = -3 Query: 411 GLPRLADPPNHGARAHHEAVLGE-GHPHPPGAVHRREHHPQHVVPALRVPEHEVIPDGAA 235 G P P H +G+ G P PPG R HP P + P + P G A Sbjct: 196 GNPGRDGQPGHPGEQGSSGQIGKIGEPGPPGEKGRDAEHPIG-GPGPKGPRGDQGPTGPA 254 Query: 234 GQPGV 220 GQ G+ Sbjct: 255 GQNGL 259
>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 617 Score = 29.3 bits (64), Expect = 7.3 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +2 Query: 281 GTTCCGWCSRRCT-APGGWGWPSPRTASWW 367 G + GW + R + GGWG + +T+SWW Sbjct: 588 GGSTGGWGNDRAGGSAGGWGASNTKTSSWW 617
>ILVD_MYCLE (O06069) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 564 Score = 29.3 bits (64), Expect = 7.3 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = -3 Query: 456 DH-GGRLAVEGELLDVGLPRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQHVVP 280 DH GG V LLD GL D + E + P P G V R H+P H Sbjct: 327 DHIGGVPVVMKALLDAGLLH-GDCLTVTGQTMAENLASIAPPDPDGQVIRTLHNPIHPTG 385 Query: 279 ALRVPEHEVIPDGA 238 + + + PDGA Sbjct: 386 GITILRGSLAPDGA 399
>DCR1B_HUMAN (Q9H816) DNA cross-link repair 1B protein (hSNM1B)| Length = 532 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 428 ANCLTWGCPVLPTHPTMALEPTMRPSLEKAIPTHPELYIAESTTRSTLS 282 +N L W THPT+A+ PT R K +HP++++ + S+ S Sbjct: 240 SNMLRWN----QTHPTIAILPTSR----KIHSSHPDIHVIPYSDHSSYS 280
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 28.9 bits (63), Expect = 9.5 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Frame = -1 Query: 347 EKAIPTHPELYIAESTTRSTLSPPCA--------YRSTKLFQTGLQASPE*LPTSSGGSA 192 E +PT PEL + ST + S P + S K +T + A+PE P++S Sbjct: 1487 ETVVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPSTSTDQP 1546 Query: 191 SSQLPVCAVTPG 156 + P T G Sbjct: 1547 VTPEPTSRATRG 1558
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 28.9 bits (63), Expect = 9.5 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -3 Query: 441 LAVEGELLDVGLPRLADPPNHGARAHHEAVLGEGHPHPPGAVHRREHHPQ 292 L ++ E L P A PP+H HH + PH P +HHPQ Sbjct: 74 LHIKQEPLGSDGPMPAQPPHHHQHPHHHQL-----PHHP----HHQHHPQ 114
>STIM2_HUMAN (Q9P246) Stromal interaction molecule 2 precursor| Length = 746 Score = 28.9 bits (63), Expect = 9.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 336 PHPPGAVH-RREHHPQHVVPALRVPEHEVI 250 PH P H R HHPQH +L P+ +++ Sbjct: 533 PHAPHPSHPRHPHHPQHTPHSLPSPDPDIL 562
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 28.9 bits (63), Expect = 9.5 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 19/102 (18%) Frame = -1 Query: 404 PVLPTHPTMALEPTMRPSLEKA-----------IPTHPELYIAESTTRSTLSPPCA---- 270 P TH + EPT + + + +PT PEL + ST + S P + Sbjct: 1541 PSTSTHQPITPEPTSQATRGRTDRTSVKTPKIVVPTVPELQASTSTDQPVTSEPTSRTTR 1600 Query: 269 ----YRSTKLFQTGLQASPE*LPTSSGGSASSQLPVCAVTPG 156 S K +T + +PE PT+S + P T G Sbjct: 1601 GRKNRSSVKTPETVVPTAPEPHPTTSTDQPITPKPTSRATRG 1642 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,752,420 Number of Sequences: 219361 Number of extensions: 1298855 Number of successful extensions: 6050 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5998 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)