ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRJP5_APIME (O97432) Major royal jelly protein 5 precursor (MRJP... 33 0.71
2GRPE_MYCPN (P78017) Protein grpE (HSP-70 cofactor) 31 2.1
3DICER_HUMAN (Q9UPY3) Endoribonuclease Dicer (EC 3.1.26.-) (Helic... 30 4.6
4XTP3B_MOUSE (Q8VEH8) XTP3-transactivated gene B protein homolog ... 30 6.0
5HFLK_BUCAP (Q8K914) Protein hflK 30 6.0
6YEA7_YEAST (P40002) Hypothetical 72.5 kDa protein in GCN4-WBP1 i... 29 7.9
7VG66_BPMD2 (O64258) Gene 66 protein (Gp66) 29 7.9
8PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-pho... 29 7.9

>MRJP5_APIME (O97432) Major royal jelly protein 5 precursor (MRJP-5) (Bee-milk|
           protein)
          Length = 598

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +2

Query: 260 KAERMNDFEYA-RMNTVPDVKQWDKLSYHQEDNKMDHLNLGLMNLDLKMNDLKMNEAAMK 436
           + +RM+  +   +M+ +  + + D++      N+MD +N     ++ +MN+  M  +   
Sbjct: 497 RMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMDRMN----RMNRQMNEYMMALSMKL 552

Query: 437 YPFRNMAYNMNPMYPKGNNGNVNSFKMN---VGVNKYPNNQN 553
             F N  YN N +  +    NVN   MN      +   NNQN
Sbjct: 553 QKFINNDYNFNEVNFRILGANVNDLIMNTRCANSDNQNNNQN 594



to top

>GRPE_MYCPN (P78017) Protein grpE (HSP-70 cofactor)|
          Length = 217

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = +2

Query: 107 RIRGRIEQAESLN*AMDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEIT-KSKAERMNDF 283
           + + +++    L   + NL  + +EFR + + +++     +  K+AE+T KSK E  N  
Sbjct: 44  KFKQQVQNFNELQQKIPNLQKVNEEFRLKVEKIQEEAQKKIQEKVAELTIKSKEELENAK 103

Query: 284 EYARMNTVPD----VKQWD-KLSYHQEDNKMDHLNLG 379
           +Y    ++      + Q++  LSY Q+D ++ +   G
Sbjct: 104 KYVIEKSIDQPLIIIDQFEIALSYAQKDPQVKNYTTG 140



to top

>DICER_HUMAN (Q9UPY3) Endoribonuclease Dicer (EC 3.1.26.-) (Helicase with RNase|
            motif) (Helicase-MOI)
          Length = 1912

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +2

Query: 242  AEITKSKAERMNDFEYARMNTVPDVKQWDKLSYHQEDNKMDHLNLGLMNLDLKMNDLKMN 421
            A +  S++  + D EY  +   P         +   D  ++HL  G  N + K+N    N
Sbjct: 1614 ASVASSRSSVLKDSEYGCLKIPPRCM----FDHPDADKTLNHLISGFENFEKKINYRFKN 1669

Query: 422  EAAMKYPFRNMAYNMN 469
            +A +   F + +Y+ N
Sbjct: 1670 KAYLLQAFTHASYHYN 1685



to top

>XTP3B_MOUSE (Q8VEH8) XTP3-transactivated gene B protein homolog precursor|
          Length = 483

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 398 KMNDLKMNEAAMKYPFRNMAYNMNPMYPKG-NNGNVNSFKMN 520
           K  + K NE + + P +N+   M P YP G  NG   S K N
Sbjct: 163 KEREAKENEKSNEIPTKNIEGQMTPYYPVGMGNGTPCSLKQN 204



to top

>HFLK_BUCAP (Q8K914) Protein hflK|
          Length = 411

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 299 NTVPDVKQWDKLSYHQEDNKMDHLNLGLMNLDLKMNDLKMNEAAMKYPFRNMAYNMNPMY 478
           N+ P++  W K +  QE N       G  N D    D K +E  +   F+   YN+N ++
Sbjct: 8   NSEPELDPWGKKN-SQEKN-------GSKNKD----DRKNHEKIITLDFKKFLYNINNIF 55

Query: 479 PKGNNG-NVNSFKMN 520
            K NN  N++  K+N
Sbjct: 56  NKTNNSQNLSKNKIN 70



to top

>YEA7_YEAST (P40002) Hypothetical 72.5 kDa protein in GCN4-WBP1 intergenic|
           region
          Length = 666

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 416 MNEAAMKYPFRNMAYNMNPMYPKGNNGNVNSFKMNVGVNKYPNNQN 553
           + + A   P   + Y  NP Y   +  N N+  MN  VN   NN N
Sbjct: 296 ITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSN 341



to top

>VG66_BPMD2 (O64258) Gene 66 protein (Gp66)|
          Length = 199

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 152 MDNLWHLGDEFRGQSKVVEDRQWS 223
           M N+W   D   G +KV EDR W+
Sbjct: 1   MSNVWFTSDLHIGHAKVAEDRDWA 24



to top

>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1003

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 136 LRLLDPAPNSDGEGAARKGKERRLGLARLPLRSAHTESTGQR 11
           L LL P   S   G +++ + R  GLAR P  + H  S  +R
Sbjct: 863 LELLAPKSRSPSPGKSKRHRSRSPGLARFPSLALHPSSRERR 904


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,757,829
Number of Sequences: 219361
Number of extensions: 1364436
Number of successful extensions: 3876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3851
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top