Clone Name | bart33b07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 392 bits (198), Expect = e-106 Identities = 345/394 (87%) Strand = Plus / Minus Query: 145 ctgagctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggt 204 |||||||||||||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 12269 ctgagctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagt 12210 Query: 205 ggaggaccgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggc 264 ||||||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| Sbjct: 12209 ggaggaccgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggc 12150 Query: 265 tgagaggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatg 324 ||||||| |||||| |||| ||||| |||||||||| |||||||||| |||||||| Sbjct: 12149 ggagaggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatg 12090 Query: 325 ggataagctatcctaccaccaagaagacaacaagatggaccacctcaatcttggcctcat 384 ||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| || Sbjct: 12089 ggataaggtatcctaccaccaagatgagagcaagatggaccacctcaatcttggccttat 12030 Query: 385 gaacctggatcttaagatgaatgatctcaagatgaatgaggctgccatgaagtacccttt 444 ||| || |||||||||||||| || ||| ||||||||| || || |||||| | ||||| Sbjct: 12029 gaatctagatcttaagatgaacgacatcaggatgaatgacgcagctatgaagaatccttt 11970 Query: 445 ccgcaacatggcctataacatgaatccgatgtaccccaagggaaacaatggtaatgtcaa 504 |||| ||||||||| |||||||||| | |||||||||||||| |||||| ||||| || Sbjct: 11969 ccgcggcatggcctacaacatgaatcagctgtaccccaagggaggcaatggcaatgttaa 11910 Query: 505 ttcattcaagatgaatgttggggtcaacaaatat 538 || |||||||||||||||||||||||||||||| Sbjct: 11909 ctcgttcaagatgaatgttggggtcaacaaatat 11876
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 392 bits (198), Expect = e-106 Identities = 345/394 (87%) Strand = Plus / Minus Query: 145 ctgagctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggt 204 |||||||||||||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 95386 ctgagctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagt 95327 Query: 205 ggaggaccgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggc 264 ||||||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| Sbjct: 95326 ggaggaccgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggc 95267 Query: 265 tgagaggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatg 324 ||||||| |||||| |||| ||||| |||||||||| |||||||||| |||||||| Sbjct: 95266 ggagaggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatg 95207 Query: 325 ggataagctatcctaccaccaagaagacaacaagatggaccacctcaatcttggcctcat 384 ||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| || Sbjct: 95206 ggataaggtatcctaccaccaagatgagagcaagatggaccacctcaatcttggccttat 95147 Query: 385 gaacctggatcttaagatgaatgatctcaagatgaatgaggctgccatgaagtacccttt 444 ||| || |||||||||||||| || ||| ||||||||| || || |||||| | ||||| Sbjct: 95146 gaatctagatcttaagatgaacgacatcaggatgaatgacgcagctatgaagaatccttt 95087 Query: 445 ccgcaacatggcctataacatgaatccgatgtaccccaagggaaacaatggtaatgtcaa 504 |||| ||||||||| |||||||||| | |||||||||||||| |||||| ||||| || Sbjct: 95086 ccgcggcatggcctacaacatgaatcagctgtaccccaagggaggcaatggcaatgttaa 95027 Query: 505 ttcattcaagatgaatgttggggtcaacaaatat 538 || |||||||||||||||||||||||||||||| Sbjct: 95026 ctcgttcaagatgaatgttggggtcaacaaatat 94993
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 392 bits (198), Expect = e-106 Identities = 345/394 (87%) Strand = Plus / Minus Query: 145 ctgagctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggt 204 |||||||||||||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 24409596 ctgagctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagt 24409537 Query: 205 ggaggaccgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggc 264 ||||||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| Sbjct: 24409536 ggaggaccgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggc 24409477 Query: 265 tgagaggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatg 324 ||||||| |||||| |||| ||||| |||||||||| |||||||||| |||||||| Sbjct: 24409476 ggagaggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatg 24409417 Query: 325 ggataagctatcctaccaccaagaagacaacaagatggaccacctcaatcttggcctcat 384 ||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| || Sbjct: 24409416 ggataaggtatcctaccaccaagatgagagcaagatggaccacctcaatcttggccttat 24409357 Query: 385 gaacctggatcttaagatgaatgatctcaagatgaatgaggctgccatgaagtacccttt 444 ||| || |||||||||||||| || ||| ||||||||| || || |||||| | ||||| Sbjct: 24409356 gaatctagatcttaagatgaacgacatcaggatgaatgacgcagctatgaagaatccttt 24409297 Query: 445 ccgcaacatggcctataacatgaatccgatgtaccccaagggaaacaatggtaatgtcaa 504 |||| ||||||||| |||||||||| | |||||||||||||| |||||| ||||| || Sbjct: 24409296 ccgcggcatggcctacaacatgaatcagctgtaccccaagggaggcaatggcaatgttaa 24409237 Query: 505 ttcattcaagatgaatgttggggtcaacaaatat 538 || |||||||||||||||||||||||||||||| Sbjct: 24409236 ctcgttcaagatgaatgttggggtcaacaaatat 24409203
>dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full insert sequence Length = 1546 Score = 392 bits (198), Expect = e-106 Identities = 345/394 (87%) Strand = Plus / Plus Query: 145 ctgagctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggt 204 |||||||||||||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct: 238 ctgagctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagt 297 Query: 205 ggaggaccgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggc 264 ||||||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| Sbjct: 298 ggaggaccgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggc 357 Query: 265 tgagaggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatg 324 ||||||| |||||| |||| ||||| |||||||||| |||||||||| |||||||| Sbjct: 358 ggagaggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatg 417 Query: 325 ggataagctatcctaccaccaagaagacaacaagatggaccacctcaatcttggcctcat 384 ||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| || Sbjct: 418 ggataaggtatcctaccaccaagatgagagcaagatggaccacctcaatcttggccttat 477 Query: 385 gaacctggatcttaagatgaatgatctcaagatgaatgaggctgccatgaagtacccttt 444 ||| || |||||||||||||| || ||| ||||||||| || || |||||| | ||||| Sbjct: 478 gaatctagatcttaagatgaacgacatcaggatgaatgacgcagctatgaagaatccttt 537 Query: 445 ccgcaacatggcctataacatgaatccgatgtaccccaagggaaacaatggtaatgtcaa 504 |||| ||||||||| |||||||||| | |||||||||||||| |||||| ||||| || Sbjct: 538 ccgcggcatggcctacaacatgaatcagctgtaccccaagggaggcaatggcaatgttaa 597 Query: 505 ttcattcaagatgaatgttggggtcaacaaatat 538 || |||||||||||||||||||||||||||||| Sbjct: 598 ctcgttcaagatgaatgttggggtcaacaaatat 631
>ref|XM_475495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 945 Score = 379 bits (191), Expect = e-102 Identities = 338/387 (87%) Strand = Plus / Plus Query: 152 atggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggaggac 211 ||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||||| Sbjct: 1 atggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggaggac 60 Query: 212 cgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgagagg 271 || || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||||| Sbjct: 61 cgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggagagg 120 Query: 272 atgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggataag 331 | |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||| Sbjct: 121 acgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggataag 180 Query: 332 ctatcctaccaccaagaagacaacaagatggaccacctcaatcttggcctcatgaacctg 391 |||||||||||||||| || | ||||||||||||||||||||||||||| ||||| || Sbjct: 181 gtatcctaccaccaagatgagagcaagatggaccacctcaatcttggccttatgaatcta 240 Query: 392 gatcttaagatgaatgatctcaagatgaatgaggctgccatgaagtaccctttccgcaac 451 |||||||||||||| || ||| ||||||||| || || |||||| | ||||||||| | Sbjct: 241 gatcttaagatgaacgacatcaggatgaatgacgcagctatgaagaatcctttccgcggc 300 Query: 452 atggcctataacatgaatccgatgtaccccaagggaaacaatggtaatgtcaattcattc 511 |||||||| |||||||||| | |||||||||||||| |||||| ||||| || || ||| Sbjct: 301 atggcctacaacatgaatcagctgtaccccaagggaggcaatggcaatgttaactcgttc 360 Query: 512 aagatgaatgttggggtcaacaaatat 538 ||||||||||||||||||||||||||| Sbjct: 361 aagatgaatgttggggtcaacaaatat 387
>gb|AY104790.1| Zea mays PCO093811 mRNA sequence Length = 1604 Score = 99.6 bits (50), Expect = 9e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 147 gagctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtgg 206 |||||||||||| | |||||||||| || || ||| |||| || || | |||||||||| Sbjct: 170 gagctatggacagcctgtggcatcttggggacgagctccgcgggcagcccaaggtggtgg 229 Query: 207 aggaccgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctg 266 |||||||||| |||||||||||||| || |||||||| |||||||| | ||| |||| | Sbjct: 230 aggaccgccagtggtctctcatgacgtccaagctggcggagatcaccaggtccaagggcg 289 Query: 267 agaggatgaa 276 |||||||||| Sbjct: 290 agaggatgaa 299 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 497 aatgtcaattcattcaagatgaatgttggggtcaacaa 534 ||||||||| | ||||||||||||||||| |||||||| Sbjct: 487 aatgtcaatgcgttcaagatgaatgttggagtcaacaa 524 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 377 ggcctcatgaacctggatcttaagatgaa 405 |||||||||||||||||||| |||||||| Sbjct: 373 ggcctcatgaacctggatctcaagatgaa 401
>gb|BT016764.1| Zea mays clone Contig597 mRNA sequence Length = 1573 Score = 79.8 bits (40), Expect = 9e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 197 aaggtggtggaggaccgccaatggtctctcatgacatcaaagctggctgagatcac 252 |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| Sbjct: 166 aaggtggtggaggaccgccagtggtcgctcatgacatccaagctggcagagatcac 221 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 398 aagatgaatgatctcaagatgaatgaggc 426 |||||||| |||||||||||||| ||||| Sbjct: 361 aagatgaacgatctcaagatgaacgaggc 389
>gb|AC131098.3| Homo sapiens BAC clone RP11-1226D22 from 4, complete sequence Length = 71827 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 487 aaacaatggtaatgtcaattcattcaa 513 |||||||||||| |||||||||||||| Sbjct: 10747 aaacaatggtaaagtcaattcattcaa 10773
>gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome 13, complete sequence Length = 178609 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcctc 89 |||||||||||||||||||||| Sbjct: 171613 tctcctctccttccccttcctc 171592
>emb|BX932566.1| Gallus gallus finished cDNA, clone ChEST635a2 Length = 703 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 ctccttccccttcctcgcagcg 95 |||||||||||||||||||||| Sbjct: 79 ctccttccccttcctcgcagcg 100
>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence Length = 165641 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcctc 89 |||||||||||||||||||||| Sbjct: 58134 tctcctctccttccccttcctc 58113
>gb|DQ087591.1| Thunnus thynnus haplotype Tt119 control region, partial sequence; mitochondrial Length = 785 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 200 attcaagatgaatgttggggt 180
>gb|AC160993.5| Mus musculus BAC clone RP23-159D11 from chromosome 16, complete sequence Length = 187536 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcctc 89 ||||||||||||||||||||| Sbjct: 45751 ctcctctccttccccttcctc 45731
>gb|AY699929.1| Thunnus thynnus thynnus haplotype 42 control region, complete sequence; mitochondrial Length = 865 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 200 attcaagatgaatgttggggt 180
>emb|CR956354.1| Wallaby DNA sequence from clone GRWB-143H14, complete sequence Length = 120769 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcct 88 ||||||||||||||||||||| Sbjct: 18732 tctcctctccttccccttcct 18752
>emb|BX323861.10| Zebrafish DNA sequence from clone CH211-209F23 in linkage group 2, complete sequence Length = 173663 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 cttccccttcctcgcagcgccctcc 101 ||||||||||||||||||| ||||| Sbjct: 141956 cttccccttcctcgcagcgtcctcc 141980
>gb|AC165369.3| Gallus gallus BAC clone CH261-58G18 from chromosome ul, complete sequence Length = 208903 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 tcatgacatcaaagctggctgagat 249 |||||||||||||||| |||||||| Sbjct: 187248 tcatgacatcaaagctagctgagat 187224
>gb|AF390433.1|AF390433 Thunnus thynnus haplotype 79 mitochondrial control region, complete sequence Length = 861 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 196 attcaagatgaatgttggggt 176
>gb|AY650684.1| Thunnus thynnus voucher USC tthy140 control region, partial sequence; mitochondrial Length = 332 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 169 attcaagatgaatgttggggt 149
>gb|AY650642.1| Thunnus thynnus voucher UdG tt993 control region, partial sequence; mitochondrial Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 196 attcaagatgaatgttggggt 176
>gb|AY650629.1| Thunnus thynnus voucher UdG tt923 control region, partial sequence; mitochondrial Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 196 attcaagatgaatgttggggt 176
>gb|AY650597.1| Thunnus thynnus voucher UdG tt773 control region, partial sequence; mitochondrial Length = 368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 196 attcaagatgaatgttggggt 176
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcctc 89 ||||||||||||||||||||| Sbjct: 13891094 ctcctctccttccccttcctc 13891074
>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031J07 Length = 172511 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcctc 89 ||||||||||||||||||||| Sbjct: 8314 ctcctctccttccccttcctc 8294
>dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1077E08 Length = 145275 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcctc 89 ||||||||||||||||||||| Sbjct: 145234 ctcctctccttccccttcctc 145214
>dbj|AB106301.1| Thunnus thynnus thynnus mitochondrial genes for tRNA-Thr, tRNA-Pro, D-loop, tRNA-Phe, 12S rRNA, partial and complete sequence, haplotype:Tth Hp23 Length = 1258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 307 attcaagatgaatgttggggt 287
>dbj|AB106285.1| Thunnus thynnus thynnus mitochondrial genes for tRNA-Thr, tRNA-Pro, D-loop, tRNA-Phe, 12S rRNA, partial and complete sequence, haplotype:Tth Hp3 Length = 1258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 attcaagatgaatgttggggt 528 ||||||||||||||||||||| Sbjct: 307 attcaagatgaatgttggggt 287
>emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chromosome 12, complete sequence Length = 183966 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcct 88 ||||||||||||||||||||| Sbjct: 146488 tctcctctccttccccttcct 146468
>gb|AC138388.3| Mus musculus BAC clone RP23-455J6 from 10, complete sequence Length = 164600 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 ggatgaacactgtccctgatg 314 ||||||||||||||||||||| Sbjct: 80055 ggatgaacactgtccctgatg 80075
>emb|Y13759.1|ENY13759 Emericella nidulans abfB gene Length = 3141 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 atgcaaggatgaacactgtcc 308 ||||||||||||||||||||| Sbjct: 379 atgcaaggatgaacactgtcc 399
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 tcatgacatcaaagctggctgagat 249 |||||||||||||||| |||||||| Sbjct: 43334 tcatgacatcaaagctagctgagat 43310
>gb|AC160456.8| Mus musculus chromosome 8, clone RP23-121F17, complete sequence Length = 221841 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 104766 ctcctctccttccccttcct 104747
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 catgacatcaaagctggctg 245 |||||||||||||||||||| Sbjct: 4820859 catgacatcaaagctggctg 4820840
>gb|AC111058.10| Mus musculus chromosome 7, clone RP24-562C11, complete sequence Length = 211691 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 126910 tctcctctccttccccttcc 126891
>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence Length = 181742 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 9118 tctcctctccttccccttcc 9137
>gb|AC005091.1| Homo sapiens BAC clone CTA-318C11 from 7, complete sequence Length = 110535 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 atgaatgaggctgccatgaa 435 |||||||||||||||||||| Sbjct: 64327 atgaatgaggctgccatgaa 64308
>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence Length = 275200 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 aacaaatatcccaataatca 549 |||||||||||||||||||| Sbjct: 114751 aacaaatatcccaataatca 114770
>gb|AC147336.2| Pan troglodytes BAC clone CH251-70I12 from Y, complete sequence Length = 194849 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 46724 tctcctctccttccccttcc 46705
>gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, complete sequence Length = 180132 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 138162 tctcctctccttccccttcc 138143
>ref|XM_448424.1| Candida glabrata CBS138, CAGL0K04565g partial mRNA Length = 1863 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 acaaagtcaaaggctgagag 270 |||||||||||||||||||| Sbjct: 427 acaaagtcaaaggctgagag 446
>gb|AC134475.3| Mus musculus BAC clone RP23-251K17 from chromosome 7, complete sequence Length = 172237 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcctctccttccccttcctc 89 |||||||||||||||||||| Sbjct: 131254 tcctctccttccccttcctc 131235
>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence Length = 156807 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 141250 tctcctctccttccccttcc 141269
>gb|AC158113.7| Mus musculus chromosome 7, clone RP23-227N6, complete sequence Length = 159400 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 126620 tctcctctccttccccttcc 126639
>emb|AL845433.4| Human DNA sequence from clone RP11-674N8 on chromosome X Contains a chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5) pseudogene, the 5' end of the NHS gene for Nance-Horan syndrome (congenital cataracts and dental anomalies) and two CpG islands, complete sequence Length = 200476 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 atggtctctcatgacatcaa 236 |||||||||||||||||||| Sbjct: 57525 atggtctctcatgacatcaa 57544
>emb|AL137787.11| Human DNA sequence from clone RP5-1070B1 on chromosome Xq22.1-23 Contains the 3' end of a novel gene, a novel gene (KIAA1817) and the 5' end of the PRPS1 for phosphoribosyl pyrophosphate synthetase 1 (PRSI) gene, complete sequence Length = 89446 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gaggctgccatgaagtaccc 441 |||||||||||||||||||| Sbjct: 13976 gaggctgccatgaagtaccc 13995
>emb|AL050331.11|HSDJ486I3 Human DNA sequence from clone RP3-486I3 on chromosome 6q22.1-22.3 Contains the 3' end of a novel gene, a novel gene, the gene for KIAA0721 (NAP (Nucleosome Assembly Protein) domain containing protein), a novel gene, an RPS5 (40S Ribosomal Protein S5) pseudogene, the TSPYL gene for TSPY-like (testis specific protein, Y-linked like), the 5' end of a novel gene, the 5' end of the SART gene for squamous cell carcinoma antigen recognised by T cell and two CpG islands, complete sequence Length = 118327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 18856 tctcctctccttccccttcc 18837
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence Length = 1302002 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 acaaagtcaaaggctgagag 270 |||||||||||||||||||| Sbjct: 433345 acaaagtcaaaggctgagag 433326
>dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, complete sequences Length = 129327 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 35880 tctcctctccttccccttcc 35899
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 16443079 tctcctctccttccccttcc 16443060
>gb|AC104018.3| Homo sapiens chromosome 8, clone RP11-354A14, complete sequence Length = 186256 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 106640 ctcctctccttccccttcct 106659
>gb|AC080145.8| Homo sapiens chromosome 15, clone CTD-2298D17, complete sequence Length = 115632 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 atgtgaagcaatgggataag 331 |||||||||||||||||||| Sbjct: 57760 atgtgaagcaatgggataag 57741
>gb|AC091045.3| Homo sapiens chromosome 15 clone RP11-111A22 map 15q14, complete sequence Length = 171947 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 67 gtctcctctccttccccttcctcgcagc 94 |||| |||||||||||||||||| |||| Sbjct: 115524 gtcttctctccttccccttcctcccagc 115497
>ref|XM_660957.1| Cryptosporidium hominis TU502 pacman protein (Chro.80265), partial mRNA Length = 2205 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 agtctcctctccttccccttcctc 89 |||||||| ||||||||||||||| Sbjct: 1927 agtctcctgtccttccccttcctc 1904
>gb|AC120137.16| Mus musculus chromosome 5, clone RP23-280O16, complete sequence Length = 181464 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcctctccttccccttcctc 89 |||||||||||||||||||| Sbjct: 131693 tcctctccttccccttcctc 131674
>gb|AC004985.2| Homo sapiens PAC clone RP5-1165K10 from 7, complete sequence Length = 159507 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 149902 tctcctctccttccccttcc 149921
>gb|AC108013.5| Homo sapiens BAC clone RP13-538M20 from 4, complete sequence Length = 118662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 51366 tctcctctccttccccttcc 51385
>gb|AC026423.9| Homo sapiens chromosome 16 clone CTD-2169M19, complete sequence Length = 116130 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tcctctccttccccttcctc 89 |||||||||||||||||||| Sbjct: 65941 tcctctccttccccttcctc 65960
>gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, complete sequence Length = 159925 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 57577 tctcctctccttccccttcc 57558
>gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y, complete sequence Length = 184977 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 37977 tctcctctccttccccttcc 37996
>gb|AF447398.1| Peanut clump virus Ni segment RNA-2 coat protein, P37, P47, P14, and P17 genes, complete cds Length = 4305 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gtctcctctccttccccttc 86 |||||||||||||||||||| Sbjct: 3083 gtctcctctccttccccttc 3064
>emb|AJ333860.1|HSA333860 Homo sapiens genomic sequence surrounding NotI site, clone NL6-LK6R Length = 820 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 108 ctcctctccttccccttcct 127
>dbj|AK063647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H12, full insert sequence Length = 588 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 259 ctcctctccttccccttcct 240
>emb|AL954673.5| Zebrafish DNA sequence from clone BUSM1-122B7 in linkage group 20, complete sequence Length = 84303 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 accaagaagacaacaagatg 361 |||||||||||||||||||| Sbjct: 33217 accaagaagacaacaagatg 33198
>emb|AL132642.4|CNS01DT7 Human chromosome 14 DNA sequence BAC R-131H24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 182643 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 159679 ctcctctccttccccttcct 159660
>emb|AL079302.7|CNS00M8S Human chromosome 14 DNA sequence BAC R-1089B7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctcctctccttccccttcct 88 |||||||||||||||||||| Sbjct: 11488 ctcctctccttccccttcct 11469
>emb|AL832032.2|HSM803339 Homo sapiens mRNA; cDNA DKFZp451P134 (from clone DKFZp451P134) Length = 6110 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 67 gtctcctctccttccccttcctcgcagc 94 |||| |||||||||||||||||| |||| Sbjct: 4119 gtcttctctccttccccttcctcccagc 4146
>emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chromosome 4, complete sequence Length = 192098 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tctcctctccttccccttcc 87 |||||||||||||||||||| Sbjct: 123197 tctcctctccttccccttcc 123216
>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete sequence Length = 189517 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcctctccttccccttcctc 89 |||||||||||||||||||| Sbjct: 29903 tcctctccttccccttcctc 29884
>emb|AL604025.15| Mouse DNA sequence from clone RP23-455K6 on chromosome 11, complete sequence Length = 151207 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 taatgtcaattcattcaagatgaa 519 |||||||| ||||||||||||||| Sbjct: 10943 taatgtcacttcattcaagatgaa 10966 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,779,462 Number of Sequences: 3902068 Number of extensions: 4779462 Number of successful extensions: 95927 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95651 Number of HSP's gapped (non-prelim): 276 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)