ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart33a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479232.1| Oryza sativa (japonica cultivar-group), mRNA 161 3e-36
2dbj|AK066723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 56 1e-04
7dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 46 0.12
8gb|AE017221.1| Thermus thermophilus HB27, complete genome 46 0.12
9gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome ... 44 0.49
10gb|AC118477.14| Mus musculus chromosome 1, clone RP24-178B14, co... 44 0.49
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.49
12gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, com... 42 1.9
13gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosom... 42 1.9
14gb|AC120548.15| Mus musculus chromosome 17, clone RP23-211H11, c... 42 1.9
15emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 42 1.9
16ref|XM_687476.1| PREDICTED: Danio rerio similar to centrosome-as... 42 1.9
17emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in ... 42 1.9
18gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome ... 40 7.6
19ref|XM_482548.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
20ref|NM_185121.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
21ref|XM_526039.1| PREDICTED: Pan troglodytes similar to striated ... 40 7.6
22gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.6
23gb|AY603755.1| Homo sapiens striated muscle preferentially expre... 40 7.6
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
25emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 7.6
26gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, com... 40 7.6
27gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's H... 40 7.6
28emb|AL132661.32|HSDJ345E4 Human DNA sequence from clone RP3-345E... 40 7.6
29emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.6
30emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.6
31gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.6
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.6
33dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.6
34dbj|AK128689.1| Homo sapiens cDNA FLJ46856 fis, clone UTERU30104... 40 7.6
35dbj|AK126500.1| Homo sapiens cDNA FLJ44536 fis, clone UTERU30049... 40 7.6
36dbj|AK097321.1| Homo sapiens cDNA FLJ40002 fis, clone STOMA2003646 40 7.6
37gb|AE011625.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.6
38gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, comple... 40 7.6
39gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 40 7.6
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
42gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromo... 40 7.6
43gb|AC053503.7| Homo sapiens BAC clone RP11-316O14 from 2, comple... 40 7.6
44gb|AC007183.4| Arabidopsis thaliana chromosome 1 BAC F9D18 seque... 40 7.6
45dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
46dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M... 40 7.6
47dbj|AK104819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
48dbj|AK066888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
49gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.6
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.6
51gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, comple... 40 7.6 
>ref|XM_479232.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score =  161 bits (81), Expect = 3e-36
 Identities = 315/393 (80%)
 Strand = Plus / Plus

                                                                       
Query: 149 atccatggctcggcccatgggatccagcggcttcgaggctgccctagccgtgtgccccgc 208
           |||||||||| |||||| ||||| |  |||||||||||| |||   ||||| ||||||||
Sbjct: 96  atccatggcttggcccacgggatgcctcggcttcgaggccgccgccgccgtctgccccgc 155

                                                                       
Query: 209 cgccgcccaggcctacttcaagtactgcggtattgtatccggatgcacaaatgcgaaccc 268
            |||  |||||| |||   ||||||| || ||||||||| |  |   |||| | |||| |
Sbjct: 156 ggccttccaggcgtaccagaagtactacgatattgtatcagcgttttcaaacgtgaacac 215

                                                                       
Query: 269 aagggaagggttggcggatctttcacgaactatagataatatggaaggaatgagggatgg 328
           | | ||||| ||||| || ||||||| |  |||||||   ||||||||| ||||||||| 
Sbjct: 216 acgagaaggattggctgagctttcacaagttatagatggcatggaaggattgagggatgc 275

                                                                       
Query: 329 aatatttggtgatattcacaagctcatgtcagttcttgagttcgatgatgtgagccaatt 388
            |||||| |||| || | |||||||||||||| |||||| || |||||||    || |||
Sbjct: 276 gatatttagtgacatccccaagctcatgtcagctcttgacttagatgatgctcaccgatt 335

                                                                       
Query: 389 taattccttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaatatcac 448
            | |  ||||||||||||||||||||||||||| || |||||||| |||||||| ||| |
Sbjct: 336 cagtatcttctatgattttgtcttcttcatttcccgagaaaatggccaaaagaacatctc 395

                                                                       
Query: 449 tgttcagaaggctcttgcagcatggaggatagttcttcttggaaggttccgattgcttga 508
           ||||||||  ||| | | |||||||||||| |||||   ||| |||||  | ||||||||
Sbjct: 396 tgttcagagagctgtgggagcatggaggatggttctaaatgggaggttttggttgcttga 455

                                            
Query: 509 ccggtggtgtaactttgttcagaagtaccaacg 541
           | ||||||||||||||||| |||||||||||||
Sbjct: 456 caggtggtgtaactttgttgagaagtaccaacg 488
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>dbj|AK066723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088A01, full
           insert sequence
          Length = 1386

 Score =  161 bits (81), Expect = 3e-36
 Identities = 315/393 (80%)
 Strand = Plus / Plus

                                                                       
Query: 149 atccatggctcggcccatgggatccagcggcttcgaggctgccctagccgtgtgccccgc 208
           |||||||||| |||||| ||||| |  |||||||||||| |||   ||||| ||||||||
Sbjct: 156 atccatggcttggcccacgggatgcctcggcttcgaggccgccgccgccgtctgccccgc 215

                                                                       
Query: 209 cgccgcccaggcctacttcaagtactgcggtattgtatccggatgcacaaatgcgaaccc 268
            |||  |||||| |||   ||||||| || ||||||||| |  |   |||| | |||| |
Sbjct: 216 ggccttccaggcgtaccagaagtactacgatattgtatcagcgttttcaaacgtgaacac 275

                                                                       
Query: 269 aagggaagggttggcggatctttcacgaactatagataatatggaaggaatgagggatgg 328
           | | ||||| ||||| || ||||||| |  |||||||   ||||||||| ||||||||| 
Sbjct: 276 acgagaaggattggctgagctttcacaagttatagatggcatggaaggattgagggatgc 335

                                                                       
Query: 329 aatatttggtgatattcacaagctcatgtcagttcttgagttcgatgatgtgagccaatt 388
            |||||| |||| || | |||||||||||||| |||||| || |||||||    || |||
Sbjct: 336 gatatttagtgacatccccaagctcatgtcagctcttgacttagatgatgctcaccgatt 395

                                                                       
Query: 389 taattccttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaatatcac 448
            | |  ||||||||||||||||||||||||||| || |||||||| |||||||| ||| |
Sbjct: 396 cagtatcttctatgattttgtcttcttcatttcccgagaaaatggccaaaagaacatctc 455

                                                                       
Query: 449 tgttcagaaggctcttgcagcatggaggatagttcttcttggaaggttccgattgcttga 508
           ||||||||  ||| | | |||||||||||| |||||   ||| |||||  | ||||||||
Sbjct: 456 tgttcagagagctgtgggagcatggaggatggttctaaatgggaggttttggttgcttga 515

                                            
Query: 509 ccggtggtgtaactttgttcagaagtaccaacg 541
           | ||||||||||||||||| |||||||||||||
Sbjct: 516 caggtggtgtaactttgttgagaagtaccaacg 548
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 395      cttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaa 442
                ||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 26113039 cttctatgattttgtcttcttcatttcccgagaaaatggccaaaagaa 26112992



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                            
Query: 467      agcatggaggatagttcttcttggaaggttccgattgcttgaccggtggtgtaactttgt 526
                |||||||||||| |||||   ||| |||||  | ||||||||| ||||||||||||||||
Sbjct: 26112865 agcatggaggatggttctaaatgggaggttttggttgcttgacaggtggtgtaactttgt 26112806

                 
Query: 527      t 527
                |
Sbjct: 26112805 t 26112805



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                            
Query: 149      atccatggctcggcccatgggatccagcggcttcgaggctgccctagccgtgtgccccgc 208
                |||||||||| |||||| ||||| |  |||||||||||| |||   ||||| ||||||||
Sbjct: 26114335 atccatggcttggcccacgggatgcctcggcttcgaggccgccgccgccgtctgccccgc 26114276
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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                              
Query: 395    cttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaa 442
              ||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 146601 cttctatgattttgtcttcttcatttcccgagaaaatggccaaaagaa 146554



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                          
Query: 467    agcatggaggatagttcttcttggaaggttccgattgcttgaccggtggtgtaactttgt 526
              |||||||||||| |||||   ||| |||||  | ||||||||| ||||||||||||||||
Sbjct: 146427 agcatggaggatggttctaaatgggaggttttggttgcttgacaggtggtgtaactttgt 146368

               
Query: 527    t 527
              |
Sbjct: 146367 t 146367



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                          
Query: 149    atccatggctcggcccatgggatccagcggcttcgaggctgccctagccgtgtgccccgc 208
              |||||||||| |||||| ||||| |  |||||||||||| |||   ||||| ||||||||
Sbjct: 147897 atccatggcttggcccacgggatgcctcggcttcgaggccgccgccgccgtctgccccgc 147838
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0519E12
          Length = 152448

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 395  cttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaa 442
            ||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 4897 cttctatgattttgtcttcttcatttcccgagaaaatggccaaaagaa 4850



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  agcatggaggatagttcttcttggaaggttccgattgcttgaccggtggtgtaactttgt 526
            |||||||||||| |||||   ||| |||||  | ||||||||| ||||||||||||||||
Sbjct: 4723 agcatggaggatggttctaaatgggaggttttggttgcttgacaggtggtgtaactttgt 4664

             
Query: 527  t 527
            |
Sbjct: 4663 t 4663



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 149  atccatggctcggcccatgggatccagcggcttcgaggctgccctagccgtgtgccccgc 208
            |||||||||| |||||| ||||| |  |||||||||||| |||   ||||| ||||||||
Sbjct: 6193 atccatggcttggcccacgggatgcctcggcttcgaggccgccgccgccgtctgccccgc 6134
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 396    ttctatgattttgtcttcttcatttctcgtgaaaatggacaaaagaatatca 447
              |||||||| ||||| |||||||| | |||||||||||| |||||||| ||||
Sbjct: 100587 ttctatgaatttgttttcttcatgtgtcgtgaaaatggtcaaaagaacatca 100638
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 195    gccgtgtgccccgccgccgcccaggcc 221
              |||||| ||||||||||||||||||||
Sbjct: 421717 gccgtgagccccgccgccgcccaggcc 421691
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 195   gccgtgtgccccgccgccgcccaggcc 221
             |||||| ||||||||||||||||||||
Sbjct: 71397 gccgtgagccccgccgccgcccaggcc 71371
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>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence
          Length = 213412

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 310    tggaaggaatgagggatggaatattt 335
              |||||||||||||||| |||||||||
Sbjct: 212152 tggaaggaatgagggaaggaatattt 212127
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>gb|AC118477.14| Mus musculus chromosome 1, clone RP24-178B14, complete sequence
          Length = 191518

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 310    tggaaggaatgagggatggaatattt 335
              |||||||||||||||| |||||||||
Sbjct: 132069 tggaaggaatgagggaaggaatattt 132094
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 206     cgccgccgcccaggcctacttc 227
               ||||||||||||||||||||||
Sbjct: 5879428 cgccgccgcccaggcctacttc 5879449
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>gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, complete sequence
          Length = 165525

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   gatagttcttcttggaaggtt 496
             |||||||||||||||||||||
Sbjct: 16468 gatagttcttcttggaaggtt 16488
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>gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosome 5, complete sequence
          Length = 167269

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 476    gatagttcttcttggaaggtt 496
              |||||||||||||||||||||
Sbjct: 108886 gatagttcttcttggaaggtt 108906
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>gb|AC120548.15| Mus musculus chromosome 17, clone RP23-211H11, complete sequence
          Length = 198829

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   tttaattccttctatgatttt 407
             |||||||||||||||||||||
Sbjct: 11423 tttaattccttctatgatttt 11403
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    gccgccgcccaggcctacttc 227
              |||||||||||||||||||||
Sbjct: 117170 gccgccgcccaggcctacttc 117190
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>ref|XM_687476.1| PREDICTED: Danio rerio similar to centrosome-associated protein 350
           (LOC564120), mRNA
          Length = 8789

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 230 gtactgcggtattgtatccgg 250
           |||||||||||||||||||||
Sbjct: 898 gtactgcggtattgtatccgg 878
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>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8, complete
              sequence
          Length = 217745

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 230    gtactgcggtattgtatccgg 250
              |||||||||||||||||||||
Sbjct: 124271 gtactgcggtattgtatccgg 124291
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>gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome 8, complete sequence
          Length = 212711

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   gaaaatggacaaaagaatat 445
             ||||||||||||||||||||
Sbjct: 82878 gaaaatggacaaaagaatat 82897
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>ref|XM_482548.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 104 cgactcctcggcggcgagcaccgg 127
           |||||| |||||||||||||||||
Sbjct: 78  cgactcgtcggcggcgagcaccgg 101
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>ref|NM_185121.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 gccgtgtgccccgccgccgcccag 218
           ||||||| ||||||||||||||||
Sbjct: 168 gccgtgtaccccgccgccgcccag 145
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>ref|XM_526039.1| PREDICTED: Pan troglodytes similar to striated muscle preferentially
            expressed protein (LOC470657), mRNA
          Length = 10911

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 195  gccgtgtgccccgccgccgcccag 218
            |||||| |||||||||||||||||
Sbjct: 3223 gccgtgagccccgccgccgcccag 3246
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     cgactcctcggcggcgagca 123
               ||||||||||||||||||||
Sbjct: 2109416 cgactcctcggcggcgagca 2109397
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>gb|AY603755.1| Homo sapiens striated muscle preferentially expressed protein mRNA,
            partial cds
          Length = 9282

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 195  gccgtgtgccccgccgccgcccag 218
            |||||| |||||||||||||||||
Sbjct: 1252 gccgtgagccccgccgccgcccag 1275
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 195      gccgtgtgccccgccgccgcccag 218
                ||||||| ||||||||||||||||
Sbjct: 34458904 gccgtgtaccccgccgccgcccag 34458927
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gccccgccgccgcccaggcc 221
             ||||||||||||||||||||
Sbjct: 26333 gccccgccgccgcccaggcc 26314
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>gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, complete sequence
          Length = 147837

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 314    aggaatgagggatggaatatttgg 337
              |||||||||||||||||| |||||
Sbjct: 100567 aggaatgagggatggaatctttgg 100590
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>gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 217309

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 404    ttttgtcttcttcatttctc 423
              ||||||||||||||||||||
Sbjct: 170208 ttttgtcttcttcatttctc 170227
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>emb|AL132661.32|HSDJ345E4 Human DNA sequence from clone RP3-345E4 on chromosome 6q26-27 Contains
             the 5' end of a gene for a novel protein and 2 CpG
             islands, complete sequence
          Length = 108865

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   attttgtcttcttcatttct 422
             ||||||||||||||||||||
Sbjct: 60340 attttgtcttcttcatttct 60359
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>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13
          Length = 346186

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cgactcctcggcggcgagca 123
             ||||||||||||||||||||
Sbjct: 33492 cgactcctcggcggcgagca 33473
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>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14
          Length = 291050

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    cgactcctcggcggcgagca 123
              ||||||||||||||||||||
Sbjct: 188404 cgactcctcggcggcgagca 188385
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    gccgccgcccaggcctacttcaag 230
              |||||||||||||||||| |||||
Sbjct: 665754 gccgccgcccaggcctacatcaag 665777



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    gccccgccgccgcccaggcc 221
              ||||||||||||||||||||
Sbjct: 622092 gccccgccgccgcccaggcc 622073
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      ggtggtcgactcctcggcgg 117
               ||||||||||||||||||||
Sbjct: 3859914 ggtggtcgactcctcggcgg 3859933
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     gccccgccgccgcccaggcc 221
               ||||||||||||||||||||
Sbjct: 4885407 gccccgccgccgcccaggcc 4885388
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>dbj|AK128689.1| Homo sapiens cDNA FLJ46856 fis, clone UTERU3010409, highly  similar
            to Aortic preferentially expressed protein 1
          Length = 5120

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 195  gccgtgtgccccgccgccgcccag 218
            |||||| |||||||||||||||||
Sbjct: 1637 gccgtgagccccgccgccgcccag 1660
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>dbj|AK126500.1| Homo sapiens cDNA FLJ44536 fis, clone UTERU3004992, highly  similar
            to Aortic preferentially expressed protein 1
          Length = 3874

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 195  gccgtgtgccccgccgccgcccag 218
            |||||| |||||||||||||||||
Sbjct: 1827 gccgtgagccccgccgccgcccag 1850
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>dbj|AK097321.1| Homo sapiens cDNA FLJ40002 fis, clone STOMA2003646
          Length = 2190

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 gccgtgtgccccgccgccgcccag 218
           |||||| |||||||||||||||||
Sbjct: 305 gccgtgagccccgccgccgcccag 282
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>gb|AE011625.1| Xanthomonas axonopodis pv. citri str. 306,  section 3 of 469 of the
            complete genome
          Length = 10597

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  gccccgccgccgcccaggcc 221
            ||||||||||||||||||||
Sbjct: 3872 gccccgccgccgcccaggcc 3853
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>gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, complete sequence
          Length = 208360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    tccttctatgattttgtctt 412
              ||||||||||||||||||||
Sbjct: 189792 tccttctatgattttgtctt 189773
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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   gccgtgtgccccgccgccgcccag 218
             ||||||| ||||||||||||||||
Sbjct: 67263 gccgtgtaccccgccgccgcccag 67240
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 104      cgactcctcggcggcgagcaccgg 127
                |||||| |||||||||||||||||
Sbjct: 21020364 cgactcgtcggcggcgagcaccgg 21020341
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 195      gccgtgtgccccgccgccgcccag 218
                ||||||| ||||||||||||||||
Sbjct: 34548976 gccgtgtaccccgccgccgcccag 34548999
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>gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromosome unknown, complete
             sequence
          Length = 186577

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   aggaatgagggatggaatatttgg 337
             |||||||||||||||||| |||||
Sbjct: 95556 aggaatgagggatggaatctttgg 95533
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>gb|AC053503.7| Homo sapiens BAC clone RP11-316O14 from 2, complete sequence
          Length = 183625

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    gccgtgtgccccgccgccgcccag 218
              |||||| |||||||||||||||||
Sbjct: 106601 gccgtgagccccgccgccgcccag 106624
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>gb|AC007183.4| Arabidopsis thaliana chromosome 1 BAC F9D18 sequence, complete sequence
          Length = 110000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ccggggttagggtttagggg 143
             ||||||||||||||||||||
Sbjct: 60092 ccggggttagggtttagggg 60111
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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0431A03
          Length = 149500

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   cgactcctcggcggcgagcaccgg 127
             |||||| |||||||||||||||||
Sbjct: 86539 cgactcgtcggcggcgagcaccgg 86516
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>dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M21, complete sequence
          Length = 154715

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  aggaatgagggatggaatatttgg 337
            |||||||||||||||||| |||||
Sbjct: 8357 aggaatgagggatggaatctttgg 8334
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>dbj|AK104819.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A10, full
           insert sequence
          Length = 1572

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 gccgtgtgccccgccgccgcccag 218
           ||||||| ||||||||||||||||
Sbjct: 193 gccgtgtaccccgccgccgcccag 170
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>dbj|AK066888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J18, full
           insert sequence
          Length = 1600

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 gccgtgtgccccgccgccgcccag 218
           ||||||| ||||||||||||||||
Sbjct: 194 gccgtgtaccccgccgccgcccag 171
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     gccccgccgccgcccaggcc 221
               ||||||||||||||||||||
Sbjct: 4888425 gccccgccgccgcccaggcc 4888406
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     gccccgccgccgcccaggcc 221
               ||||||||||||||||||||
Sbjct: 3673014 gccccgccgccgcccaggcc 3672995
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>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence
          Length = 158740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    gaaaatggacaaaagaatat 445
              ||||||||||||||||||||
Sbjct: 123665 gaaaatggacaaaagaatat 123684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,784,711
Number of Sequences: 3902068
Number of extensions: 4784711
Number of successful extensions: 96124
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95416
Number of HSP's gapped (non-prelim): 703
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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