Clone Name | bart33a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 357 bits (180), Expect = 3e-95 Identities = 288/324 (88%) Strand = Plus / Plus Query: 243 cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 302 ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 7985422 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 7985481 Query: 303 tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 362 | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 7985482 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 7985541 Query: 363 cgccttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaaga 422 |||| ||||||||||| ||||||||||| || || ||||| || || ||||| || ||| Sbjct: 7985542 cgccctccgtggtggcgtacaccaagggcggggagcggctggtcgggcagatcgccaagc 7985601 Query: 423 ggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgca 482 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct: 7985602 ggcaggccgtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgca 7985661 Query: 483 agatggctgaggtagatgacgaggccaagcaggtctcgtataacgttgtgcgtgatgaga 542 ||||||| ||||| || |||||||||||||||||||| || |||| || || || || | Sbjct: 7985662 agatggccgaggtcgacgacgaggccaagcaggtctcctaccacgtcgtccgcgacgaca 7985721 Query: 543 acggaaacgtcaagctcgactgcc 566 |||| ||||||||||||||||||| Sbjct: 7985722 acggcaacgtcaagctcgactgcc 7985745
>dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full insert sequence Length = 2462 Score = 357 bits (180), Expect = 3e-95 Identities = 288/324 (88%) Strand = Plus / Plus Query: 243 cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 302 ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 215 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 274 Query: 303 tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 362 | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 275 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 334 Query: 363 cgccttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaaga 422 |||| ||||||||||| ||||||||||| || || ||||| || || ||||| || ||| Sbjct: 335 cgccctccgtggtggcgtacaccaagggcggggagcggctggtcgggcagatcgccaagc 394 Query: 423 ggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgca 482 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct: 395 ggcaggccgtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgca 454 Query: 483 agatggctgaggtagatgacgaggccaagcaggtctcgtataacgttgtgcgtgatgaga 542 ||||||| ||||| || |||||||||||||||||||| || |||| || || || || | Sbjct: 455 agatggccgaggtcgacgacgaggccaagcaggtctcctaccacgtcgtccgcgacgaca 514 Query: 543 acggaaacgtcaagctcgactgcc 566 |||| ||||||||||||||||||| Sbjct: 515 acggcaacgtcaagctcgactgcc 538
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 357 bits (180), Expect = 3e-95 Identities = 288/324 (88%) Strand = Plus / Plus Query: 243 cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 302 ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 7985303 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 7985362 Query: 303 tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 362 | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 7985363 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 7985422 Query: 363 cgccttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaaga 422 |||| ||||||||||| ||||||||||| || || ||||| || || ||||| || ||| Sbjct: 7985423 cgccctccgtggtggcgtacaccaagggcggggagcggctggtcgggcagatcgccaagc 7985482 Query: 423 ggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgca 482 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct: 7985483 ggcaggccgtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgca 7985542 Query: 483 agatggctgaggtagatgacgaggccaagcaggtctcgtataacgttgtgcgtgatgaga 542 ||||||| ||||| || |||||||||||||||||||| || |||| || || || || | Sbjct: 7985543 agatggccgaggtcgacgacgaggccaagcaggtctcctaccacgtcgtccgcgacgaca 7985602 Query: 543 acggaaacgtcaagctcgactgcc 566 |||| ||||||||||||||||||| Sbjct: 7985603 acggcaacgtcaagctcgactgcc 7985626
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 357 bits (180), Expect = 3e-95 Identities = 288/324 (88%) Strand = Plus / Minus Query: 243 cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 302 ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 14748 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 14689 Query: 303 tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 362 | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 14688 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 14629 Query: 363 cgccttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaaga 422 |||| ||||||||||| ||||||||||| || || ||||| || || ||||| || ||| Sbjct: 14628 cgccctccgtggtggcgtacaccaagggcggggagcggctggtcgggcagatcgccaagc 14569 Query: 423 ggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgca 482 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct: 14568 ggcaggccgtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgca 14509 Query: 483 agatggctgaggtagatgacgaggccaagcaggtctcgtataacgttgtgcgtgatgaga 542 ||||||| ||||| || |||||||||||||||||||| || |||| || || || || | Sbjct: 14508 agatggccgaggtcgacgacgaggccaagcaggtctcctaccacgtcgtccgcgacgaca 14449 Query: 543 acggaaacgtcaagctcgactgcc 566 |||| ||||||||||||||||||| Sbjct: 14448 acggcaacgtcaagctcgactgcc 14425
>dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L16, full insert sequence Length = 2201 Score = 295 bits (149), Expect = 8e-77 Identities = 245/277 (88%) Strand = Plus / Plus Query: 290 accaactccgccgtcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgag 349 ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 7 accaactccgcggtggcggcgatggagggcgggaagccgacggtcatcaccaacgccgag 66 Query: 350 ggccagcggacgacgccttccgtggtggcttacaccaagggaggagaacggctagtgggc 409 | ||||||||||||||| ||||||||||| ||||||||||| || || ||||| || || Sbjct: 67 gaccagcggacgacgccctccgtggtggcgtacaccaagggcggggagcggctggtcggg 126 Query: 410 cagattgctaagaggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgc 469 ||||| || ||| |||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 127 cagatcgccaagcggcaggccgtcgtcaacccggagaacaccttcttctccgtcaagcgc 186 Query: 470 ttcattggacgcaagatggctgaggtagatgacgaggccaagcaggtctcgtataacgtt 529 ||||| || ||||||||||| ||||| || |||||||||||||||||||| || |||| Sbjct: 187 ttcatcggccgcaagatggccgaggtcgacgacgaggccaagcaggtctcctaccacgtc 246 Query: 530 gtgcgtgatgagaacggaaacgtcaagctcgactgcc 566 || || || || ||||| ||||||||||||||||||| Sbjct: 247 gtccgcgacgacaacggcaacgtcaagctcgactgcc 283
>gb|AC098572.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1234_D05, complete sequence Length = 107476 Score = 170 bits (86), Expect = 3e-39 Identities = 203/242 (83%) Strand = Plus / Plus Query: 246 tgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccgtcg 305 |||||||| |||||||||||||||| || |||||||| || || ||||||||||| || | Sbjct: 32623 tgcgggtggcgtgcgagaaggtggtcgggatcgacctcgggaccaccaactccgcggtgg 32682 Query: 306 cggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacgacgc 365 |||| ||||||||||| ||||||||| | ||||||||||||||||| || || |||| Sbjct: 32683 cggccatggagggcggcaagccgacgatcgtcaccaacgccgagggcgcccgcaccacgc 32742 Query: 366 cttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaagaggc 425 | || || || || ||||||||| || || ||||| ||||| ||||| || ||| | | Sbjct: 32743 cgtcggtcgtcgcctacaccaagtccggtgaccggctggtggggcagatcgccaagcgac 32802 Query: 426 aggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgcaaga 485 |||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 32803 aggcggtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgcaaga 32862 Query: 486 tg 487 || Sbjct: 32863 tg 32864
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 170 bits (86), Expect = 3e-39 Identities = 203/242 (83%) Strand = Plus / Plus Query: 246 tgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccgtcg 305 |||||||| |||||||||||||||| || |||||||| || || ||||||||||| || | Sbjct: 13488577 tgcgggtggcgtgcgagaaggtggtcgggatcgacctcgggaccaccaactccgcggtgg 13488636 Query: 306 cggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacgacgc 365 |||| ||||||||||| ||||||||| | ||||||||||||||||| || || |||| Sbjct: 13488637 cggccatggagggcggcaagccgacgatcgtcaccaacgccgagggcgcccgcaccacgc 13488696 Query: 366 cttccgtggtggcttacaccaagggaggagaacggctagtgggccagattgctaagaggc 425 | || || || || ||||||||| || || ||||| ||||| ||||| || ||| | | Sbjct: 13488697 cgtcggtcgtcgcctacaccaagtccggtgaccggctggtggggcagatcgccaagcgac 13488756 Query: 426 aggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgcaaga 485 |||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 13488757 aggcggtcgtcaacccggagaacaccttcttctccgtcaagcgcttcatcggccgcaaga 13488816 Query: 486 tg 487 || Sbjct: 13488817 tg 13488818 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cccctccgggccatcgccgcc 62 ||||||||||||||||||||| Sbjct: 6844023 cccctccgggccatcgccgcc 6844003
>gb|BT024111.1| Zea mays clone EL01N0516B01 mRNA sequence Length = 2060 Score = 133 bits (67), Expect = 7e-28 Identities = 190/231 (82%) Strand = Plus / Plus Query: 336 tcaccaacgccgagggccagcggacgacgccttccgtggtggcttacaccaagggaggag 395 ||||||||||||||||| ||| || || || ||||| ||||| ||||||| ||| | Sbjct: 9 tcaccaacgccgagggcgcgcgcacaactccctccgtagtggcgtacaccattacagggg 68 Query: 396 aacggctagtgggccagattgctaagaggcaggccgttgtcaacccggaaaacaccttct 455 | || || ||||| ||||| |||||| | ||||| || || ||||| || |||||||||| Sbjct: 69 agcgcctggtggggcagatcgctaagcgccaggcggtcgtgaaccccgagaacaccttct 128 Query: 456 tctccgtcaagcgcttcattggacgcaagatggctgaggtagatgacgaggccaagcagg 515 |||| |||||||||||||| || ||||||||| ||||||| || |||||||||||||||| Sbjct: 129 tctctgtcaagcgcttcatcggccgcaagatgtctgaggtcgacgacgaggccaagcagg 188 Query: 516 tctcgtataacgttgtgcgtgatgagaacggaaacgtcaagctcgactgcc 566 ||||||| |||||| || |||||||| |||||||| |||||||||| Sbjct: 189 tctcgtacggcgttgtcaaagacgagaacggcaacgtcaaactcgactgcc 239
>emb|AJ271605.2|DSA271605 Dunaliella salina mRNA for chloroplast-localised heat shock protein (hsp70B gene) Length = 2764 Score = 113 bits (57), Expect = 6e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 260 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 319 |||||||||||||| |||||| |||| || ||||||||||| || || ||||||||||| Sbjct: 201 gagaaggtggtgggcatcgacttgggaaccaccaactccgctgtggcagcgatggaggga 260 Query: 320 ggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttccgtggtggct 379 || |||||||| | ||||||||||| ||||| || || || || ||||||||||| Sbjct: 261 ggcaagccgaccatcatcaccaacgctgagggtagccgcaccaccccctccgtggtggcc 320 Query: 380 tacaccaagggaggagaacggctagtgggccagattgctaagaggcaggccgttgtcaac 439 | ||||||||| || || || || || || ||||| || ||| | || ||||| || ||| Sbjct: 321 ttcaccaagggcggtgaccgcctggttggacagatcgccaagcgccaagccgtggtgaac 380 Query: 440 ccggaaaacaccttcttctccgtcaagcgcttcattggacgcaag 484 || || ||||||||||||||||||||||| ||||| || |||||| Sbjct: 381 ccagagaacaccttcttctccgtcaagcgtttcatcggtcgcaag 425
>gb|AY072744.1| Dunaliella salina heat shock protein 70B (hsp70B) mRNA, complete cds Length = 2732 Score = 105 bits (53), Expect = 2e-19 Identities = 182/225 (80%) Strand = Plus / Plus Query: 260 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 319 ||||||||||| || |||||| |||| || ||||||||||| || || ||||||||||| Sbjct: 145 gagaaggtggttggcatcgacttgggaaccaccaactccgctgtggcagcgatggaggga 204 Query: 320 ggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttccgtggtggct 379 || ||||| ||| | ||| ||||||||||||| || || || || ||||||||||| Sbjct: 205 ggcaagcccacgatcatcgccaacgccgagggtagccgcaccaccccctccgtggtggcc 264 Query: 380 tacaccaagggaggagaacggctagtgggccagattgctaagaggcaggccgttgtcaac 439 | ||||||||| || || || || || || ||||| || ||| | || ||||| || ||| Sbjct: 265 ttcaccaagggcggtgaccgcctggttggacagatcgccaagcgccaagccgtggtgaac 324 Query: 440 ccggaaaacaccttcttctccgtcaagcgcttcattggacgcaag 484 || || ||||||||||||||||||||||| ||||| || |||||| Sbjct: 325 ccagagaacaccttcttctccgtcaagcgtttcatcggtcgcaag 369
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 310 gatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttc 369 ||||||||| || ||||| || |||||| | |||||||||||| || ||||||||||| Sbjct: 2489024 gatggagggtggcaagcccaccgtgatcgcgaacgccgagggcttccgcacgacgccttc 2488965 Query: 370 cgtggtggcttacac 384 |||||| |||||||| Sbjct: 2488964 cgtggttgcttacac 2488950
>emb|X69213.1|PSST70 P.sativum Psst70 gene for heat-shock protein Length = 4974 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 413 attgctaagaggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttc 472 ||||| ||| ||||||| ||||| || || || ||||| || |||||||||||| | || Sbjct: 1129 attgccaagcggcaggcggttgtgaatcccgagaacacgtttttctccgtcaagaggttt 1188 Query: 473 attggacgcaagatggctgaggtagatgacgaggccaagcaggtctc 519 |||||||| |||||| ||||||| || || ||| | ||||||||||| Sbjct: 1189 attggacggaagatgtctgaggttgacgaagagtcaaagcaggtctc 1235
>gb|L03299.1|PEA70HSP Pisum sativum chloroplast stromal 70 kDa heat shock protein (hsp70) mRNA, complete cds Length = 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 413 attgctaagaggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttc 472 ||||| ||| ||||||| ||||| || || || ||||| || |||||||||||| | || Sbjct: 400 attgccaagcggcaggcggttgtgaatcccgagaacacgtttttctccgtcaagaggttt 459 Query: 473 attggacgcaagatggctgaggtagatgacgaggccaagcaggtctc 519 |||||||| |||||| ||||||| || || ||| | ||||||||||| Sbjct: 460 attggacggaagatgtctgaggttgacgaagagtcaaagcaggtctc 506
>emb|X96502.1|CRHSP70B C.reinhardtii hsp70b gene Length = 5598 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 410 cagattgctaagaggcaggccgttgtcaacccggaaaacaccttcttctccgtcaagcgc 469 |||||||| ||| | ||||| || |||||||| || ||||| ||||||||||| |||||| Sbjct: 1985 cagattgccaagcgccaggctgtggtcaaccccgagaacactttcttctccgtaaagcgc 2044 Query: 470 ttcat 474 ||||| Sbjct: 2045 ttcat 2049 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 264 aggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggcggta 323 |||| ||||| ||||| |||||||| |||||||| || || || || |||||||| || | Sbjct: 1440 aggtcgtgggtatcgatctgggcacgaccaactcggctgtggctgccatggagggtggca 1499 Query: 324 agccgacggtgatcaccaacgccgagggc 352 ||||||| | ||||||||||| |||||| Sbjct: 1500 agccgaccatcatcaccaacgctgagggc 1528
>gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete sequence Length = 129388 Score = 52.0 bits (26), Expect = 0.002 Identities = 167/214 (78%) Strand = Plus / Plus Query: 282 tgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtgatcacca 341 |||| |||||||| ||||||||||| || ||||| || || || || || | ||||||| Sbjct: 26515 tgggtactaccaattccgccgtcgccgccatggaaggtggcaaacctaccatcatcacca 26574 Query: 342 acgccgagggccagcggacgacgccttccgtggtggcttacaccaagggaggagaacggc 401 ||||||| || ||||| || || || || || || |||||||||||| || || | | Sbjct: 26575 acgccgaaggtcagcgtaccactccctctgtcgttgcttacaccaagaacggtgatagac 26634 Query: 402 tagtgggccagattgctaagaggcaggccgttgtcaacccggaaaacaccttcttctccg 461 | || || |||||||| ||| | |||||||| || || || || |||||||||||||| | Sbjct: 26635 tcgtcggtcagattgccaagcgtcaggccgtcgttaatcccgagaacaccttcttctctg 26694 Query: 462 tcaagcgcttcattggacgcaagatggctgaggt 495 | ||| | |||||||| | |||||| ||||||| Sbjct: 26695 tgaagagattcattggtaggaagatgtctgaggt 26728
>gb|U92815.1|CLU92815 Citrullus lanatus heat shock protein 70 precursor mRNA, complete cds Length = 2430 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Plus Query: 260 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 319 ||||| || |||||||| || || || ||||| |||||||| || ||||| ||||| || Sbjct: 247 gagaaagttgtgggaattgatcttggaactactaactccgcagttgcggccatggaaggt 306 Query: 320 ggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttccgtggtggct 379 || ||||| || | | ||||||||||| ||| || | |||||||| || ||||||||| Sbjct: 307 gggaagccaactattgtaaccaacgccgaaggcaagagaacgacgccatcggtggtggct 366 Query: 380 tacac 384 ||||| Sbjct: 367 tacac 371
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Plus Query: 425 caggccgttgtcaacccggaaaacaccttcttctccgtcaagcgcttcattggacgcaag 484 ||||||||| ||||||| || ||||| |||| || |||||||||||||| || |||||| Sbjct: 4484647 caggccgttctcaaccccgagaacacgttctattcggtcaagcgcttcatcggccgcaag 4484706
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Minus Query: 269 gtgggaatcgacctgggcactaccaact 296 ||||| |||||||||||||||||||||| Sbjct: 3798968 gtgggcatcgacctgggcactaccaact 3798941
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 310 gatggagggcggtaagccgacggtgatcaccaacgccgagggc 352 ||||||||| |||||||| || || ||| |||||||||||||| Sbjct: 2215405 gatggagggtggtaagcccaccgttatcgccaacgccgagggc 2215363
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 268 ggtgggaatcgacctgggcactaccaactcc 298 |||||| |||||||||||||| ||||||||| Sbjct: 1064481 ggtgggcatcgacctgggcaccaccaactcc 1064511
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 269 gtgggaatcgacctgggcactaccaa 294 |||||||||||| ||||||||||||| Sbjct: 5209598 gtgggaatcgacttgggcactaccaa 5209573 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactcc 298 ||||||||||| |||||||||||| Sbjct: 894940 atcgacctggggactaccaactcc 894963
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 269 gtgggaatcgacctgggcactaccaa 294 ||||| |||||||||||||||||||| Sbjct: 1397489 gtgggtatcgacctgggcactaccaa 1397514 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 atcgacctgggcactaccaactcc 298 ||||||||||| |||||||||||| Sbjct: 4992600 atcgacctggggactaccaactcc 4992577
>emb|X77458.1|SCDNAJ S.coelicolor dnaK, grpE and dnaJ genes Length = 5611 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 334 |||||||||||||| || ||||||| |||| | |||||||||| |||| || || Sbjct: 1894 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 1953 Query: 335 atcaccaacgccgagggc 352 |||||||||||||||||| Sbjct: 1954 atcaccaacgccgagggc 1971
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Minus Query: 275 atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 334 |||||||||||||| || ||||||| |||| | |||||||||| |||| || || Sbjct: 134725 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 134666 Query: 335 atcaccaacgccgagggc 352 |||||||||||||||||| Sbjct: 134665 atcaccaacgccgagggc 134648
>gb|AC025678.7| Homo sapiens chromosome 15, clone RP11-602M11, complete sequence Length = 189533 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 cttctcctccgcccacctccttctcc 39 |||||||||| ||||||||||||||| Sbjct: 102870 cttctcctccccccacctccttctcc 102895
>gb|L46700.1|STMDNAK Streptomyces coelicolor DnaK (dnaK), GrpE (grpE), DnaJ (dnaJ), and heat shock protein (hspR) genes, complete cds Length = 4648 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 334 |||||||||||||| || ||||||| |||| | |||||||||| |||| || || Sbjct: 218 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 277 Query: 335 atcaccaacgccgagggc 352 |||||||||||||||||| Sbjct: 278 atcaccaacgccgagggc 295
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 gcccacctccttctccatcccctccg 49 ||||||| |||||||||||||||||| Sbjct: 18219997 gcccaccaccttctccatcccctccg 18220022
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.49 Identities = 64/78 (82%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 334 |||||||||||||| || ||||||| |||| | |||||||||| |||| || || Sbjct: 5479072 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 5479131 Query: 335 atcaccaacgccgagggc 352 |||||||||||||||||| Sbjct: 5479132 atcaccaacgccgagggc 5479149 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggcca 143 |||||||||||||||||||||| Sbjct: 405428 tcccaggtcagcgcgatggcca 405407 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggcca 143 |||||||||||||||||||||| Sbjct: 351862 tcccaggtcagcgcgatggcca 351841 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 269 gtgggaatcgacctgggcactaccaactc 297 ||||| |||||||||||||| |||||||| Sbjct: 8630212 gtgggcatcgacctgggcaccaccaactc 8630240
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 gcccacctccttctccatcccctccg 49 ||||||| |||||||||||||||||| Sbjct: 21210 gcccaccaccttctccatcccctccg 21235
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 gcccacctccttctccatcccctccg 49 ||||||| |||||||||||||||||| Sbjct: 143398 gcccaccaccttctccatcccctccg 143423
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 ggtcagcgcgatggccagcgcc 148 |||||||||||||||||||||| Sbjct: 4521105 ggtcagcgcgatggccagcgcc 4521126
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0074P11, complete sequence Length = 148753 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cccctccgggccatcgccgcc 62 ||||||||||||||||||||| Sbjct: 74977 cccctccgggccatcgccgcc 74957
>ref|XM_447319.1| Candida glabrata CBS138 hypothetical protein (CAGL0I01496g) partial mRNA Length = 1944 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 425 caggccgttgtcaacccggaaaacacctt 453 ||||||||||| |||||||| |||||||| Sbjct: 235 caggccgttgtgaacccggagaacacctt 263
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 425 caggccgttgtcaacccggaaaacacctt 453 ||||||||||| |||||||| |||||||| Sbjct: 120492 caggccgttgtgaacccggagaacacctt 120520
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 356 cggacgacgccttccgtggtggcttacaccaag 388 ||||| ||||| ||||| ||||||||||||||| Sbjct: 325190 cggaccacgccctccgtcgtggcttacaccaag 325158
>gb|DQ223723.1| Thermococcus sp. NA1 acylamino acid-releasing enzyme gene, complete cds Length = 15100 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 tgatgagaacggaaacgtcaa 555 ||||||||||||||||||||| Sbjct: 6741 tgatgagaacggaaacgtcaa 6761
>gb|L12237.1|MSG8318K Mycobacterium avium (clone Mavc83) DNA sequence encoding an 18 kDa protein Length = 610 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gcggcggccggcggtcatgcc 198 ||||||||||||||||||||| Sbjct: 254 gcggcggccggcggtcatgcc 274
>ref|XM_483577.1| Oryza sativa (japonica cultivar-group), mRNA Length = 510 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 337 ccacctccttctccttcccctccg 314
>ref|XM_469166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5616 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctcct 34 ||||||||||||||||||| |||| Sbjct: 1332 cctcttctcctccgcccacttcct 1309
>ref|NM_190356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 265 atggccagcgcctccccgtc 284
>ref|XM_473057.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 466 ccacctccttctccttcccctccg 443
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 tgcgggttgctcgtggcgggcggc 230 |||||||||| ||||||||||||| Sbjct: 433794 tgcgggttgcgcgtggcgggcggc 433817
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 atcgacctgggcactaccaactcc 298 ||||||||||| |||||||||||| Sbjct: 5077639 atcgacctggggactaccaactcc 5077616
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 atcgacctgggcactaccaactcc 298 ||||||||||| |||||||||||| Sbjct: 4797113 atcgacctggggactaccaactcc 4797090
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctcct 34 ||||||||||||||||||| |||| Sbjct: 25843176 cctcttctcctccgcccacttcct 25843153
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 cctcttctcctccgcccacctcct 34 ||||||||||||||||||| |||| Sbjct: 1720 cctcttctcctccgcccacttcct 1743
>gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genomic sequence, complete sequence Length = 44761 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctcct 34 ||||||||||||||||||| |||| Sbjct: 14119 cctcttctcctccgcccacttcct 14096
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 73214 ccacctccttctccttcccctccg 73237
>emb|CR655756.2|CNS0F4YA Tetraodon nigroviridis full-length cDNA Length = 368 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 266 gtggtgggaatcgacctgggcactaccaactc 297 ||||| ||||||||||||||||| ||| |||| Sbjct: 233 gtggttggaatcgacctgggcaccacctactc 264
>gb|AC087903.26| Mus musculus strain C57BL/6J clone rp23-4p7 map 3, complete sequence Length = 183094 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 40312 cctcttctcctcctcccccctccttctc 40285 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 32680 cctcttctcctcctcccccctccttctc 32653
>ref|NM_198366.1| Danio rerio eukaryotic translation initiation factor 4A, isoform 1A (eif4a1a), mRNA Length = 2390 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctccatcccctccgggccat 55 |||||||||||||||||||| Sbjct: 65 ctccatcccctccgggccat 46
>emb|CR925828.3| Zebrafish DNA sequence from clone DKEY-156K7 in linkage group 16, complete sequence Length = 188634 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ctccatcccctccgggccat 55 |||||||||||||||||||| Sbjct: 1429 ctccatcccctccgggccat 1448
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gccggcggcggccggcggtc 193 |||||||||||||||||||| Sbjct: 227738 gccggcggcggccggcggtc 227757
>gb|BC048899.1| Danio rerio eukaryotic translation initiation factor 4A, isoform 1A, mRNA (cDNA clone MGC:55961 IMAGE:3819402), complete cds Length = 2390 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctccatcccctccgggccat 55 |||||||||||||||||||| Sbjct: 65 ctccatcccctccgggccat 46
>gb|AY738621.1| Natronococcus occultus DnaK gene, partial cds Length = 1359 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 ccaacgccgagggccagcggacgacgcc 366 ||||||| |||||| ||||||||||||| Sbjct: 35 ccaacgcggagggcgagcggacgacgcc 62
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 gtgatcaccaacgccgaggg 351 |||||||||||||||||||| Sbjct: 3036302 gtgatcaccaacgccgaggg 3036321
>dbj|AK132201.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:3425403H08 product:nuclear receptor subfamily 2, group E, member 1, full insert sequence Length = 3242 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gagccggcggcggccggcgg 191 |||||||||||||||||||| Sbjct: 600 gagccggcggcggccggcgg 619
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 acggtgatcaccaacgccgagggc 352 ||||||||| |||||||||||||| Sbjct: 5197261 acggtgatcgccaacgccgagggc 5197284
>ref|XM_684934.1| PREDICTED: Danio rerio similar to Eukaryotic translation initiation factor 4A, isoform 1A, transcript variant 1 (LOC564228), mRNA Length = 2630 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctccatcccctccgggccat 55 |||||||||||||||||||| Sbjct: 69 ctccatcccctccgggccat 50
>ref|XM_704278.1| PREDICTED: Danio rerio similar to Eukaryotic translation initiation factor 4A, isoform 1A, transcript variant 2 (LOC564228), mRNA Length = 1009 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctccatcccctccgggccat 55 |||||||||||||||||||| Sbjct: 64 ctccatcccctccgggccat 45
>gb|AC158760.4| Mus musculus chromosome 5, clone RP23-319E24, complete sequence Length = 191682 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cctccttctccatcccctcc 48 |||||||||||||||||||| Sbjct: 78971 cctccttctccatcccctcc 78952
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 24952629 ccacctccttctccttcccctccg 24952652
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 12343249 atggccagcgcctccccgtc 12343230
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 27063799 ccacctccttctccttcccctccg 27063822
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctcct 34 ||||||||||||||||||| |||| Sbjct: 25934485 cctcttctcctccgcccacttcct 25934462
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 35028235 atggccagcgcctccccgtc 35028216 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 31905209 atggccagcgcctccccgtc 31905190
>gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, complete sequence Length = 117100 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cctccttctccatcccctcc 48 |||||||||||||||||||| Sbjct: 46741 cctccttctccatcccctcc 46760
>gb|AC158989.1| Mus musculus BAC clone RP23-399H20 from chromosome 3, complete sequence Length = 190372 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 81012 cctcttctcctcctcccccctccttctc 81039 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 73332 cctcttctcctcctcccccctccttctc 73359
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 91287 atggccagcgcctccccgtc 91268
>gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216841 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acctccttctccatcccctc 47 |||||||||||||||||||| Sbjct: 34393 acctccttctccatcccctc 34374
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 35385 atggccagcgcctccccgtc 35366
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 72463 atggccagcgcctccccgtc 72444
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 126803 atggccagcgcctccccgtc 126784
>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0599F09 Length = 157415 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 8833 atggccagcgcctccccgtc 8814
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 34886 ccacctccttctccttcccctccg 34909
>dbj|AK069435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024L22, full insert sequence Length = 1219 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 tgaggtagatgacgaggcca 509 |||||||||||||||||||| Sbjct: 901 tgaggtagatgacgaggcca 920
>gb|AF135163.1|AF135163 Pseudomonas syringae pv. glycinea DnaK protein (dnaK) gene, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactcc 298 ||||||||||| |||||||||||| Sbjct: 19 atcgacctggggactaccaactcc 42
>gb|AY752741.1| Mesorhizobium loti strain ATCC 33669 DnaK gene, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactcc 298 |||||||||||||| ||||||||| Sbjct: 19 atcgacctgggcacgaccaactcc 42
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccacctccttctccatcccctccg 49 |||||||||||||| ||||||||| Sbjct: 80892 ccacctccttctccttcccctccg 80915
>dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1250F11, complete sequence Length = 98657 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cctccttctccatcccctcc 48 |||||||||||||||||||| Sbjct: 25737 cctccttctccatcccctcc 25718
>gb|AF073320.1|AF073320 Streptomyces scabies strain ATCC33282 ORFtnp pseudogene, complete sequence; and plant pathogenicity factor (nec1) gene, complete cds Length = 1508 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 139 tcccaggtcagcgcgatggc 120
>gb|AF073319.1|AF073319 Streptomyces scabies strain 87.22 ORFtnp pseudogene, complete sequence; and plant pathogenicity factor (nec1) gene, complete cds Length = 1485 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 139 tcccaggtcagcgcgatggc 120
>gb|AF073318.1|AF073318 Streptomyces acidiscabies strain ATCC49003 ORFtnp pseudogene, complete sequence Length = 729 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 119 tcccaggtcagcgcgatggc 100
>gb|AF073316.1|AF073316 Streptomyces acidiscabies strain 84.104 ORFtnp pseudogene, complete sequence Length = 749 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 139 tcccaggtcagcgcgatggc 120
>gb|AF073315.1|AF073315 Streptomyces turgidiscabies strain Hi-C-13 ORFtnp pseudogene, complete sequence; and plant pathogenicity factor (nec1) gene, complete cds Length = 1508 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 139 tcccaggtcagcgcgatggc 120
>gb|AF073314.1|AF073314 Streptomyces turgidiscabies strain Car-8 ORFtnp pseudogene, complete sequence; and plant pathogenicity factor (nec1) gene, complete cds Length = 1488 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 119 tcccaggtcagcgcgatggc 100
>gb|AY707080.1| Streptomyces turgidiscabies pathogenicity island putative transposase, hypothetical protein, putative transposase (IS1629), and negrogenic protein (nec1) genes, putative transposase pseudogene, and putative resolvase/invertase gene, complete cds Length = 11000 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 5002 tcccaggtcagcgcgatggc 5021
>gb|AC111107.18| Mus musculus chromosome 5, clone RP23-195P3, complete sequence Length = 203785 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cctccttctccatcccctcc 48 |||||||||||||||||||| Sbjct: 45210 cctccttctccatcccctcc 45229
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aggtcagcgcgatggccagc 145 |||||||||||||||||||| Sbjct: 5957118 aggtcagcgcgatggccagc 5957137
>dbj|AP006183.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1169H7, complete sequence Length = 158699 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cctccttctccatcccctcc 48 |||||||||||||||||||| Sbjct: 149583 cctccttctccatcccctcc 149564
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 atcgacctgggcactaccaactcc 298 |||||||||||||| ||||||||| Sbjct: 1779303 atcgacctgggcaccaccaactcc 1779326
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ttgctcgtggcgggcggcca 232 |||||||||||||||||||| Sbjct: 27048 ttgctcgtggcgggcggcca 27067
>gb|AF031232.1|AF031232 Streptomyces scabies transposase pseudogene, partial sequence; plant pathogenicity factor (nec1) gene, complete cds; and unknown gene Length = 2406 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcccaggtcagcgcgatggc 141 |||||||||||||||||||| Sbjct: 291 tcccaggtcagcgcgatggc 272
>gb|AC150033.2| Mus musculus BAC clone RP23-449N19 from 3, complete sequence Length = 179293 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 125787 cctcttctcctcctcccccctccttctc 125760 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 cctcttctcctccgcccacctccttctc 38 ||||||||||||| ||| |||||||||| Sbjct: 118107 cctcttctcctcctcccccctccttctc 118080
>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete sequence Length = 223854 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cccacctccttctccatccc 44 |||||||||||||||||||| Sbjct: 103474 cccacctccttctccatccc 103455
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atggccagcgcctccccgtc 156 |||||||||||||||||||| Sbjct: 1936 atggccagcgcctccccgtc 1917 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,785,368 Number of Sequences: 3902068 Number of extensions: 3785368 Number of successful extensions: 88293 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85942 Number of HSP's gapped (non-prelim): 2347 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)