Clone Name | bart33a04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450329.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1835 Score = 299 bits (151), Expect = 5e-78 Identities = 291/337 (86%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 162 aagtggctgcgcaagctcacgtcggcgacggtgaacaaggccgtgatgagggacctcatc 221 ||||||||||||||||| |||||| ||| || |||| |||||| |||| ||||||||| Sbjct: 283 aagtggctgcgcaagctgacgtcgtcgagcgtcaacaccgccgtgctgagagacctcatc 342 Query: 222 gcgcggacgcccatgttgtggtacctcgccgagcgctcgggcaccatcctccgcccgcgc 281 ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||| Sbjct: 343 gcgcggacgcccatgctgtggtacctcggcgagcgctccggcaccatcctccggccgcgc 402 Query: 282 acccggcgcgtcgcgggcgccgaggcgctccacgcggtgcgcgccgtggccatcgggccg 341 ||||||| ||| |||| ||| || || |||||||||||||||||||||||||| ||| Sbjct: 403 tcccggcg---cgccggcgtcgacgctctgcacgcggtgcgcgccgtggccatcggcccg 459 Query: 342 ttccaccgcggcgaccggggcctccccttccccgacgacgccaagctcccgttcatgcgg 401 |||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| Sbjct: 460 ttccaccgtcgtgaccactggctccccttccccgacgacgccaagctgccgttcctgcgc 519 Query: 402 tacctgcaggagcagtgcgggctcgacgtcgacgcctacgtggcggcgctgtcgggagag 461 ||||||||||| |||||||| ||||||||||| |||||| |||||||| | | ||| Sbjct: 520 tacctgcaggaccagtgcggcctcgacgtcgaacactacgtcgcggcgctcgccgacgag 579 Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgacg 498 |||||||||||||||| ||||||||||||||||||| Sbjct: 580 agcgaccgcctccgcgatgagttcgccgacgacgacg 616
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 299 bits (151), Expect = 5e-78 Identities = 291/337 (86%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 162 aagtggctgcgcaagctcacgtcggcgacggtgaacaaggccgtgatgagggacctcatc 221 ||||||||||||||||| |||||| ||| || |||| |||||| |||| ||||||||| Sbjct: 4174017 aagtggctgcgcaagctgacgtcgtcgagcgtcaacaccgccgtgctgagagacctcatc 4174076 Query: 222 gcgcggacgcccatgttgtggtacctcgccgagcgctcgggcaccatcctccgcccgcgc 281 ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||| Sbjct: 4174077 gcgcggacgcccatgctgtggtacctcggcgagcgctccggcaccatcctccggccgcgc 4174136 Query: 282 acccggcgcgtcgcgggcgccgaggcgctccacgcggtgcgcgccgtggccatcgggccg 341 ||||||| ||| |||| ||| || || |||||||||||||||||||||||||| ||| Sbjct: 4174137 tcccggcg---cgccggcgtcgacgctctgcacgcggtgcgcgccgtggccatcggcccg 4174193 Query: 342 ttccaccgcggcgaccggggcctccccttccccgacgacgccaagctcccgttcatgcgg 401 |||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| Sbjct: 4174194 ttccaccgtcgtgaccactggctccccttccccgacgacgccaagctgccgttcctgcgc 4174253 Query: 402 tacctgcaggagcagtgcgggctcgacgtcgacgcctacgtggcggcgctgtcgggagag 461 ||||||||||| |||||||| ||||||||||| |||||| |||||||| | | ||| Sbjct: 4174254 tacctgcaggaccagtgcggcctcgacgtcgaacactacgtcgcggcgctcgccgacgag 4174313 Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgacg 498 |||||||||||||||| ||||||||||||||||||| Sbjct: 4174314 agcgaccgcctccgcgatgagttcgccgacgacgacg 4174350
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 299 bits (151), Expect = 5e-78 Identities = 291/337 (86%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 162 aagtggctgcgcaagctcacgtcggcgacggtgaacaaggccgtgatgagggacctcatc 221 ||||||||||||||||| |||||| ||| || |||| |||||| |||| ||||||||| Sbjct: 157498 aagtggctgcgcaagctgacgtcgtcgagcgtcaacaccgccgtgctgagagacctcatc 157557 Query: 222 gcgcggacgcccatgttgtggtacctcgccgagcgctcgggcaccatcctccgcccgcgc 281 ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||| Sbjct: 157558 gcgcggacgcccatgctgtggtacctcggcgagcgctccggcaccatcctccggccgcgc 157617 Query: 282 acccggcgcgtcgcgggcgccgaggcgctccacgcggtgcgcgccgtggccatcgggccg 341 ||||||| ||| |||| ||| || || |||||||||||||||||||||||||| ||| Sbjct: 157618 tcccggcg---cgccggcgtcgacgctctgcacgcggtgcgcgccgtggccatcggcccg 157674 Query: 342 ttccaccgcggcgaccggggcctccccttccccgacgacgccaagctcccgttcatgcgg 401 |||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| Sbjct: 157675 ttccaccgtcgtgaccactggctccccttccccgacgacgccaagctgccgttcctgcgc 157734 Query: 402 tacctgcaggagcagtgcgggctcgacgtcgacgcctacgtggcggcgctgtcgggagag 461 ||||||||||| |||||||| ||||||||||| |||||| |||||||| | | ||| Sbjct: 157735 tacctgcaggaccagtgcggcctcgacgtcgaacactacgtcgcggcgctcgccgacgag 157794 Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgacg 498 |||||||||||||||| ||||||||||||||||||| Sbjct: 157795 agcgaccgcctccgcgatgagttcgccgacgacgacg 157831
>dbj|AK101561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D17, full insert sequence Length = 1833 Score = 299 bits (151), Expect = 5e-78 Identities = 291/337 (86%), Gaps = 3/337 (0%) Strand = Plus / Plus Query: 162 aagtggctgcgcaagctcacgtcggcgacggtgaacaaggccgtgatgagggacctcatc 221 ||||||||||||||||| |||||| ||| || |||| |||||| |||| ||||||||| Sbjct: 281 aagtggctgcgcaagctgacgtcgtcgagcgtcaacaccgccgtgctgagagacctcatc 340 Query: 222 gcgcggacgcccatgttgtggtacctcgccgagcgctcgggcaccatcctccgcccgcgc 281 ||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||| Sbjct: 341 gcgcggacgcccatgctgtggtacctcggcgagcgctccggcaccatcctccggccgcgc 400 Query: 282 acccggcgcgtcgcgggcgccgaggcgctccacgcggtgcgcgccgtggccatcgggccg 341 ||||||| ||| |||| ||| || || |||||||||||||||||||||||||| ||| Sbjct: 401 tcccggcg---cgccggcgtcgacgctctgcacgcggtgcgcgccgtggccatcggcccg 457 Query: 342 ttccaccgcggcgaccggggcctccccttccccgacgacgccaagctcccgttcatgcgg 401 |||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| Sbjct: 458 ttccaccgtcgtgaccactggctccccttccccgacgacgccaagctgccgttcctgcgc 517 Query: 402 tacctgcaggagcagtgcgggctcgacgtcgacgcctacgtggcggcgctgtcgggagag 461 ||||||||||| |||||||| ||||||||||| |||||| |||||||| | | ||| Sbjct: 518 tacctgcaggaccagtgcggcctcgacgtcgaacactacgtcgcggcgctcgccgacgag 577 Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgacg 498 |||||||||||||||| ||||||||||||||||||| Sbjct: 578 agcgaccgcctccgcgatgagttcgccgacgacgacg 614
>dbj|AK106263.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F09, full insert sequence Length = 2025 Score = 283 bits (143), Expect = 3e-73 Identities = 289/337 (85%), Gaps = 3/337 (0%) Strand = Plus / Minus Query: 162 aagtggctgcgcaagctcacgtcggcgacggtgaacaaggccgtgatgagggacctcatc 221 ||||||||||||||||| |||||| ||| || |||| |||||| |||| ||||| ||| Sbjct: 1249 aagtggctgcgcaagctgacgtcgtcgagcgtcaacaccgccgtgctgagagaccttatc 1190 Query: 222 gcgcggacgcccatgttgtggtacctcgccgagcgctcgggcaccatcctccgcccgcgc 281 |||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||| Sbjct: 1189 ccgcggacgcccatgctgtggtacctcggcgagcgctccggcaccatcctccggccgcgc 1130 Query: 282 acccggcgcgtcgcgggcgccgaggcgctccacgcggtgcgcgccgtggccatcgggccg 341 ||||||| ||| |||| ||| || || |||||||||||||||||||||||||| ||| Sbjct: 1129 tcccggcg---cgccggcgtcgacgctctgcacgcggtgcgcgccgtggccatcggcccg 1073 Query: 342 ttccaccgcggcgaccggggcctccccttccccgacgacgccaagctcccgttcatgcgg 401 |||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| Sbjct: 1072 ttccaccgtcgtgaccactggctccccttccccgacgacgccaagctgccgttcctgcgc 1013 Query: 402 tacctgcaggagcagtgcgggctcgacgtcgacgcctacgtggcggcgctgtcgggagag 461 ||||||||||| |||||||| ||||||||||| |||||| |||||||| | | ||| Sbjct: 1012 tacctgcaggaccagtgcggcctcgacgtcgaacactacgtcgcggcgctcgccgacgag 953 Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgacg 498 |||||||||||||||| ||||||||||||||||||| Sbjct: 952 agcgaccgcctccgcgatgagttcgccgacgacgacg 916
>gb|AF118449.1|AF118449 Streptomyces granaticolor DNA-dependent RNA polymerase alpha subunit (rpoA) gene, complete cds Length = 1106 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 485 cgccgacgacgacgcggacgcggg 508 |||||||||||||||||||||||| Sbjct: 996 cgccgacgacgacgcggacgcggg 1019
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 462 cgcgaccgcctccgcgacgagttcgccgacgacgac 497 |||||| |||| |||| ||||||||||||||||||| Sbjct: 3487023 cgcgacagcctgcgcgccgagttcgccgacgacgac 3486988
>gb|AC147717.1| Gallus gallus BAC clone CH261-5M18 from chromosome unknown, complete sequence Length = 189841 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 367 ccttccccgacgacgccaagctc 389 ||||||||||||||||||||||| Sbjct: 153423 ccttccccgacgacgccaagctc 153401
>ref|XM_469612.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 gcgccgaggcgctccacgcggtgcg 322 ||||||||||||| ||||||||||| Sbjct: 1280 gcgccgaggcgctgcacgcggtgcg 1304
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 gcgccgaggcgctccacgcggtgcg 322 ||||||||||||| ||||||||||| Sbjct: 29545689 gcgccgaggcgctgcacgcggtgcg 29545713 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cgacgacgacgcggacgcgg 507 |||||||||||||||||||| Sbjct: 29047030 cgacgacgacgcggacgcgg 29047011 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 cgacgagttcgccgacgacgacgc 499 ||||||||||| |||||||||||| Sbjct: 26760107 cgacgagttcgacgacgacgacgc 26760084 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 17027435 cgccgacgacgacgcggacg 17027416 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcgtcgcgggcgccgaggcg 308 |||||||||||||||||||| Sbjct: 5507719 gcgtcgcgggcgccgaggcg 5507738
>ref|NM_057773.3| Drosophila melanogaster Minichromosome maintenance 2 CG7538-RA (Mcm2), mRNA Length = 3032 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ggcgctgctggacgacgagga 538 ||||||||||||||||||||| Sbjct: 495 ggcgctgctggacgacgagga 515
>gb|AY069702.1| Drosophila melanogaster LD47441 full length cDNA Length = 2853 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ggcgctgctggacgacgagga 538 ||||||||||||||||||||| Sbjct: 294 ggcgctgctggacgacgagga 314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 cgccgtcgacggcgaggccgg 157 ||||||||||||||||||||| Sbjct: 7222957 cgccgtcgacggcgaggccgg 7222977
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 gcgccgaggcgctccacgcggtgcg 322 ||||||||||||| ||||||||||| Sbjct: 29637111 gcgccgaggcgctgcacgcggtgcg 29637135 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cgacgacgacgcggacgcgg 507 |||||||||||||||||||| Sbjct: 29138452 cgacgacgacgcggacgcgg 29138433 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 cgacgagttcgccgacgacgacgc 499 ||||||||||| |||||||||||| Sbjct: 26851430 cgacgagttcgacgacgacgacgc 26851407 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 17021004 cgccgacgacgacgcggacg 17020985 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcgtcgcgggcgccgaggcg 308 |||||||||||||||||||| Sbjct: 5506934 gcgtcgcgggcgccgaggcg 5506953
>gb|AC008094.5|AC008094 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR45A07, complete sequence Length = 170498 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ggcgctgctggacgacgagga 538 ||||||||||||||||||||| Sbjct: 144165 ggcgctgctggacgacgagga 144185
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 cgcgggcgccgaggcgctccacgcg 317 |||||||||||||||||||| |||| Sbjct: 2205595 cgcgggcgccgaggcgctcctcgcg 2205619 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 caaggcgctgctggacgacgagga 538 ||||| |||||||||||||||||| Sbjct: 4995444 caaggtgctgctggacgacgagga 4995467 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 gacgacgacgcggacgcggg 508 |||||||||||||||||||| Sbjct: 595204 gacgacgacgcggacgcggg 595223
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 gcgccgaggcgctccacgcggtgcg 322 ||||||||||||| ||||||||||| Sbjct: 68319 gcgccgaggcgctgcacgcggtgcg 68343
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 cgccgtcgacggcgaggccgg 157 ||||||||||||||||||||| Sbjct: 100368 cgccgtcgacggcgaggccgg 100388
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 cgccgtcgacggcgaggccgg 157 ||||||||||||||||||||| Sbjct: 57961 cgccgtcgacggcgaggccgg 57981
>gb|AY821553.1| Streptomyces clavuligerus putative RNA helicase gene, partial cds; BldG and putative anti-sigma factor genes, complete cds; and putative pyrophosphate synthase gene, partial cds Length = 2525 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 504 gcgggggtggacaaggcgctgctggacga 532 |||||||||||| ||||| |||||||||| Sbjct: 1466 gcgggggtggacgaggcggtgctggacga 1494
>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete sequence Length = 244757 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 ggcgctgctggacgacgagga 538 ||||||||||||||||||||| Sbjct: 66169 ggcgctgctggacgacgagga 66189
>emb|AJ744850.1| Streptomyces ribosidificus ribostamycin biosynthesis gene cluster, strain NRRL B-11466 Length = 43190 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 tccaccgcggcgaccggggcc 363 ||||||||||||||||||||| Sbjct: 38947 tccaccgcggcgaccggggcc 38967
>gb|L42762.1|DROMCM2R Drosophila melanogaster DNA replication licensing factor (MCM2) mRNA, complete cds Length = 2774 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 ggcgctgctggacgacgagga 538 ||||||||||||||||||||| Sbjct: 2488 ggcgctgctggacgacgagga 2468
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gcgcgtcgcgggcgccgagg 306 |||||||||||||||||||| Sbjct: 96227 gcgcgtcgcgggcgccgagg 96208
>ref|XM_523631.1| PREDICTED: Pan troglodytes similar to keratin 25D; type I inner root sheath specific keratin 25 irs4 (LOC468240), mRNA Length = 2577 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ccgggcggaagtggctgcgc 173 |||||||||||||||||||| Sbjct: 2091 ccgggcggaagtggctgcgc 2072
>ref|XM_473910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1020 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 cgctgctggacgacgaggag 539 |||||||||||||||||||| Sbjct: 71 cgctgctggacgacgaggag 90
>ref|NM_001031501.1| Gallus gallus elongation factor Tu GTP binding domain containing 2 (EFTUD2), mRNA Length = 3457 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 2298 ggtggacaaggcgctgctgg 2317
>ref|XM_464087.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1527 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ccacgcggtgcgcgccgtgg 330 |||||||||||||||||||| Sbjct: 189 ccacgcggtgcgcgccgtgg 208
>ref|NM_189918.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 453 cgccgacgacgacgcggacg 472
>ref|XM_468683.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 498 cgccgacgacgacgcggacg 517
>ref|NM_184874.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 cgacgagttcgccgacgacgacgc 499 ||||||||||| |||||||||||| Sbjct: 981 cgacgagttcgacgacgacgacgc 1004
>gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003G23, complete sequence Length = 135931 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 cgacgagttcgccgacgacgacgc 499 ||||||||||| |||||||||||| Sbjct: 74105 cgacgagttcgacgacgacgacgc 74128
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 cgacgacgacgcggacgcgg 507 |||||||||||||||||||| Sbjct: 92261 cgacgacgacgcggacgcgg 92280
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tcgcgggcgccgaggcgctc 311 |||||||||||||||||||| Sbjct: 2328625 tcgcgggcgccgaggcgctc 2328644
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 ctccgcgacgagttcgccgacgac 494 |||||||||||||||| ||||||| Sbjct: 1307984 ctccgcgacgagttcgacgacgac 1307961
>ref|XM_367026.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03102.4) partial mRNA Length = 1602 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gcgggctcgacgtcgacgcc 437 |||||||||||||||||||| Sbjct: 319 gcgggctcgacgtcgacgcc 300
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 cgagttcgccgacgacgacg 498 |||||||||||||||||||| Sbjct: 15533 cgagttcgccgacgacgacg 15514
>ref|XM_611908.2| PREDICTED: Bos taurus similar to mutS homolog 6, transcript variant 1 (LOC540526), mRNA Length = 5546 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 accggggcctccccttcccc 374 |||||||||||||||||||| Sbjct: 112 accggggcctccccttcccc 131
>ref|XM_584545.2| PREDICTED: Bos taurus similar to neutrophil cytosolic factor 4 (40kD) isoform 1 (LOC507859), mRNA Length = 1090 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ctccgcccgcgcacccggcg 289 |||||||||||||||||||| Sbjct: 346 ctccgcccgcgcacccggcg 365
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tcgcgggcgccgaggcgctc 311 |||||||||||||||||||| Sbjct: 1175232 tcgcgggcgccgaggcgctc 1175213
>gb|BC113230.1| Bos taurus neutrophil cytosolic factor 4, 40kDa, mRNA (cDNA clone MGC:138034 IMAGE:8080458), complete cds Length = 1324 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ctccgcccgcgcacccggcg 289 |||||||||||||||||||| Sbjct: 554 ctccgcccgcgcacccggcg 573
>ref|XR_002939.1| PREDICTED: Mus musculus similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b (LOC670341), mRNA Length = 1485 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 caaggcgctgctggacgacgagga 538 ||||| |||||||||||||||||| Sbjct: 1215 caaggagctgctggacgacgagga 1238
>ref|XR_005117.1| PREDICTED: Mus musculus similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b (LOC675705), mRNA Length = 1485 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 caaggcgctgctggacgacgagga 538 ||||| |||||||||||||||||| Sbjct: 1215 caaggagctgctggacgacgagga 1238
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete sequence Length = 157662 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 58181 cgccgacgacgacgcggacg 58162
>emb|CR733419.2|CNS0GSOU Tetraodon nigroviridis full-length cDNA Length = 1482 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 505 ggtggacaaggcgctgctgg 524
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 cgctgctggacgacgaggag 539 |||||||||||||||||||| Sbjct: 70300 cgctgctggacgacgaggag 70319
>emb|CR730699.1|CNS0GQR4 Tetraodon nigroviridis full-length cDNA Length = 1476 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 494 ggtggacaaggcgctgctgg 513
>emb|CR727820.2|CNS0GOJ6 Tetraodon nigroviridis full-length cDNA Length = 1476 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 495 ggtggacaaggcgctgctgg 514
>ref|XM_504329.1| Yarrowia lipolytica CLIB122, YALI0E23925g predicted mRNA Length = 1068 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 caaggcgctgctggacgacg 534 |||||||||||||||||||| Sbjct: 585 caaggcgctgctggacgacg 604
>gb|AF411137.1| Bison bison NADPH oxidase cytosolic protein p40phox mRNA, complete cds Length = 1020 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ctccgcccgcgcacccggcg 289 |||||||||||||||||||| Sbjct: 448 ctccgcccgcgcacccggcg 467
>gb|AF443792.1| Bison bison NADPH oxidase component p40phox variant mRNA, complete cds Length = 1286 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ctccgcccgcgcacccggcg 289 |||||||||||||||||||| Sbjct: 448 ctccgcccgcgcacccggcg 467
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tcgcgggcgccgaggcgctc 311 |||||||||||||||||||| Sbjct: 1056716 tcgcgggcgccgaggcgctc 1056697
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cgctgctggacgacgaggag 539 |||||||||||||||||||| Sbjct: 47493 cgctgctggacgacgaggag 47474
>emb|AJ851526.1| Gallus gallus mRNA for hypothetical protein, clone 4m11 Length = 3457 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 2298 ggtggacaaggcgctgctgg 2317
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ gene, spiK gene, spiL gene and spiZ gene Length = 48000 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cgggcgccgaggcgctccacgcgg 318 |||||||||||||||||| ||||| Sbjct: 11287 cgggcgccgaggcgctccgcgcgg 11310
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence Length = 153126 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcgtcgcgggcgccgaggcg 308 |||||||||||||||||||| Sbjct: 51250 gcgtcgcgggcgccgaggcg 51269
>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcgtcgcgggcgccgaggcg 308 |||||||||||||||||||| Sbjct: 104313 gcgtcgcgggcgccgaggcg 104332
>gb|AE012394.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 302 of 460 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ggcgacggtgaacaaggccg 204 |||||||||||||||||||| Sbjct: 6935 ggcgacggtgaacaaggccg 6916
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ggcgacggtgaacaaggccg 204 |||||||||||||||||||| Sbjct: 1579973 ggcgacggtgaacaaggccg 1579992
>gb|BC102447.1| Bos taurus similar to CG8253-PA, mRNA (cDNA clone MGC:127299 IMAGE:7947162), complete cds Length = 1297 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 gcggcgaccggggcctccccttcc 372 |||||||||||||| ||||||||| Sbjct: 94 gcggcgaccggggcgtccccttcc 71
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cgctgctggacgacgaggag 539 |||||||||||||||||||| Sbjct: 31469810 cgctgctggacgacgaggag 31469791
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ccacgcggtgcgcgccgtgg 330 |||||||||||||||||||| Sbjct: 2125471 ccacgcggtgcgcgccgtgg 2125490
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 39821539 cgccgacgacgacgcggacg 39821520
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ggcgcgtcgcgggcgccgaggcgc 309 ||||||||||||| |||||||||| Sbjct: 1943472 ggcgcgtcgcgggagccgaggcgc 1943495
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 2247 cgccgacgacgacgcggacg 2228
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 172438 cgccgacgacgacgcggacg 172419
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ccgacgacgacgcggacgcg 506 |||||||||||||||||||| Sbjct: 3989240 ccgacgacgacgcggacgcg 3989259 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gtcgcgggcgccgaggcgct 310 |||||||||||||||||||| Sbjct: 1605703 gtcgcgggcgccgaggcgct 1605684
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ccacgcggtgcgcgccgtgg 330 |||||||||||||||||||| Sbjct: 40164 ccacgcggtgcgcgccgtgg 40183
>dbj|AK121266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D18, full insert sequence Length = 2121 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ccacgcggtgcgcgccgtgg 330 |||||||||||||||||||| Sbjct: 476 ccacgcggtgcgcgccgtgg 495
>dbj|AK110828.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H11, full insert sequence Length = 1662 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 cgccgacgacgacgcggacg 504 |||||||||||||||||||| Sbjct: 177 cgccgacgacgacgcggacg 196
>dbj|AK064665.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B07, full insert sequence Length = 1424 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 cgacgagttcgccgacgacgacgc 499 ||||||||||| |||||||||||| Sbjct: 950 cgacgagttcgacgacgacgacgc 973
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cgctgctggacgacgaggag 539 |||||||||||||||||||| Sbjct: 89097 cgctgctggacgacgaggag 89078
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 cgccgtcgacggcgaggccgggcg 160 ||||| |||||||||||||||||| Sbjct: 2859877 cgccgacgacggcgaggccgggcg 2859854
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggacaaggcgctgctgg 528 |||||||||||||||||||| Sbjct: 2853021 ggtggacaaggcgctgctgg 2853040
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 agctcacgtcggcgacggtgaaca 198 |||||||||||||| ||||||||| Sbjct: 90867 agctcacgtcggcgtcggtgaaca 90890
>emb|CR293526.28| Mouse DNA sequence from clone RP23-9K14 on chromosome X, complete sequence Length = 211297 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 caaggcgctgctggacgacgagga 538 ||||| |||||||||||||||||| Sbjct: 66194 caaggagctgctggacgacgagga 66171
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 caaggcgctgctggacgacg 534 |||||||||||||||||||| Sbjct: 2837866 caaggcgctgctggacgacg 2837885
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 gcgaccgcctccgcgacgag 482 |||||||||||||||||||| Sbjct: 2228024 gcgaccgcctccgcgacgag 2228005
>ref|NM_001035091.1| Bos taurus similar to CG8253-PA (MGC127299), mRNA Length = 1297 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 gcggcgaccggggcctccccttcc 372 |||||||||||||| ||||||||| Sbjct: 94 gcggcgaccggggcgtccccttcc 71
>dbj|AB017357.1| Ipomoea batatas mRNA for L-Galactono-1,4-lactone dehydrogenase, complete cds Length = 2023 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 tccccttccccgacgacgccaagc 387 |||||||||||| ||||||||||| Sbjct: 230 tccccttccccgccgacgccaagc 253 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,071,802 Number of Sequences: 3902068 Number of extensions: 3071802 Number of successful extensions: 76019 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71078 Number of HSP's gapped (non-prelim): 4925 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)