Clone Information

BLAST Search Result

Clone Name	bart32h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C...	80	5e-15
2	PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Pro...	75	1e-13
3	STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein...	47	4e-05
4	STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein...	47	4e-05
5	STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein...	45	1e-04
6	UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin f...	44	4e-04
7	UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4	37	0.037
8	UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin f...	35	0.11
9	TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-der...	32	0.18
10	TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic li...	34	0.24
11	RNF37_MOUSE (Q925F4) RING finger protein 37 (Ubiquitin-conjugati...	34	0.24
12	NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)	34	0.31
13	RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugati...	33	0.54
14	NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)	33	0.70
15	TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)	33	0.70
16	COABC_SYNY3 (P73881) Coenzyme A biosynthesis bifunctional protei...	32	0.92
17	VNUA_PRVKA (P33485) Probable nuclear antigen	32	1.2
18	TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger pro...	32	1.6
19	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	32	1.6
20	VE2_HPV05 (P06921) Regulatory protein E2	31	2.0
21	INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)	31	2.7
22	TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulator...	31	2.7
23	TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-inte...	30	3.5
24	YR901_MIMIV (Q5UQZ7) Putative ankyrin repeat protein R901	30	3.5
25	A33_PLEWA (Q02084) Zinc-binding protein A33	30	3.5
26	YR845_MIMIV (Q5UP14) Putative ankyrin repeat protein R845	30	3.5
27	G3O23_WHEAT (Q3I409) Gibberellin 3-beta-dioxygenase 2-3 (EC 1.14...	30	3.5
28	CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2...	30	4.5
29	BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finge...	30	4.5
30	POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP123...	30	4.5
31	CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein...	30	4.5
32	TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (R...	30	4.5
33	TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47	30	5.9
34	SWC3_YEAST (P31376) SWR1-complex protein 3	30	5.9
35	TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-inte...	30	5.9
36	PHNA_PSEAE (P09785) Anthranilate synthase component 1 (EC 4.1.3....	30	5.9
37	TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger prot...	30	5.9
38	TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger pr...	30	5.9
39	ACHB_HUMAN (P11230) Acetylcholine receptor protein, beta subunit...	29	7.8
40	ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiest...	29	7.8
41	TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31	29	7.8

>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
 Frame = +2

Query: 170 VEVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPT 349
           + +P  F CPIS+E+M+DPV +S+G TY+R  IE+W+   GH  CP T+Q++  +    T
Sbjct: 271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWI-ASGHHTCPTTQQKMSTS--ALT 327

Query: 350 PNHTLRRLIQGWCAVHAVE---RFPTPRAPIDA 439
           PN+ LR LI  WC  + +E   R   P  P  A
Sbjct: 328 PNYVLRSLISQWCETNGMEPPKRSTQPNKPTPA 360

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>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 35/77 (45%), Positives = 52/77 (67%)
 Frame = +2

Query: 176 VPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPN 355
           +P YF CPIS+E+M+DPV +S+G TY+R SI++W+   GH  CP +++ L  A    TPN
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLHAGL--TPN 304

Query: 356 HTLRRLIQGWCAVHAVE 406
           + L+ LI  WC  + +E
Sbjct: 305 YVLKSLIALWCESNGIE 321

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>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP) (CLL-associated antigen KW-8)
           (Antigen NY-C
          Length = 303

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +2

Query: 77  ACVHS*IDKYIYRVRTRCGYDQEVMEGLPSQVE-------VPSYFLCPISMEIMRDPVTL 235
           AC+ +  DKY+             M+ L SQV+       +P Y    IS E+MR+P   
Sbjct: 198 ACIEAKHDKYMAD-----------MDELFSQVDEKRKKRDIPDYLCGKISFELMREPCIT 246

Query: 236 SSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRLIQGW 385
            SGITYDR+ IE  +   GH + P+T+  L     +  PN  ++ +I  +
Sbjct: 247 PSGITYDRKDIEEHLQRVGHFD-PVTRSPL--TQEQLIPNLAMKEVIDAF 293

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>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP)
          Length = 304

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +2

Query: 77  ACVHS*IDKYIYRVRTRCGYDQEVMEGLPSQVE-------VPSYFLCPISMEIMRDPVTL 235
           AC+ +  DKY+             M+ L SQV+       +P Y    IS E+MR+P   
Sbjct: 199 ACIEAKHDKYMAD-----------MDELFSQVDEKRKKRDIPDYLCGKISFELMREPCIT 247

Query: 236 SSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRLIQGW 385
            SGITYDR+ IE  +   GH + P+T+  L     +  PN  ++ +I  +
Sbjct: 248 PSGITYDRKDIEEHLQRVGHFD-PVTRSPL--TQEQLIPNLAMKEVIDAF 294

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>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1)
          Length = 314

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +2

Query: 173 EVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTP 352
           ++P Y    IS E+MR+P    SGITYDR+ IE  +   GH + P+T+  L     +  P
Sbjct: 237 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD-PVTRSPL--TQDQLIP 293

Query: 353 NHTLRRLIQGW 385
           N  ++ +I  +
Sbjct: 294 NLAMKEVIDAF 304

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>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion|
            degradation protein 2) (UB fusion protein 2)
          Length = 1010

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +2

Query: 173  EVPSYFLCPISMEIMRDPVTL-SSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPT 349
            ++P YFL P+   IM+DPV L  SGI+ DR +I+  + +D     P  +  L   D   T
Sbjct: 930  DIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATD--PFNRTPLTLDD--VT 985

Query: 350  PNHTLRRLI 376
            PN TLR  I
Sbjct: 986  PNDTLREEI 994

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>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4|
          Length = 980

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 26/71 (36%), Positives = 35/71 (49%)
 Frame = +2

Query: 173  EVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTP 352
            +VP  F  PI   IM DPV L SG   DR  IER + +  +   P  +  L  +  E +P
Sbjct: 905  DVPEEFKDPIMDAIMVDPVKLPSGHVMDRAVIERHLLSTPNN--PFNRAPL--SHNELSP 960

Query: 353  NHTLRRLIQGW 385
            +  L+  IQ W
Sbjct: 961  DSELKAKIQEW 971

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>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion|
            degradation protein 2) (UB fusion protein 2)
          Length = 961

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 173  EVPSYFLCPISMEIMRDPVTL-SSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPT 349
            +VP  FL P+   IM+DPV L +S +  DR +I+  + +D     P  +  L   D   T
Sbjct: 880  DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTD--PFNRMPLKLED--VT 935

Query: 350  PNHTLRRLI 376
            PN  LR+ I
Sbjct: 936  PNEELRQKI 944

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>TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-derived|
           apoptosis-inducing RBCC protein) (MAIR protein) (Nc8
           protein) (Hemopoeitic lineage switch protein 5)
          Length = 501

 Score = 32.0 bits (71), Expect(2) = 0.18
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 191 LCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRR 370
           LC +  +  RD VTL  G  + R  +           CP+ K++  A   E   NHTL  
Sbjct: 20  LCAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCPVCKER--AVPGELRTNHTLNN 77

Query: 371 LIQ 379
           L++
Sbjct: 78  LVE 80



 Score = 21.6 bits (44), Expect(2) = 0.18
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +1

Query: 391 GAR--GREVPHPARSHR 435
           GAR  GR  P P R+HR
Sbjct: 89  GARWTGRRSPRPCRAHR 105

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>TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic lineage switch|
           protein 5)
          Length = 493

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 191 LCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRR 370
           LC +  +  RD VTL  G  + R  + R         CP+ K +   AD     NHTL  
Sbjct: 20  LCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLR--TNHTLNN 77

Query: 371 LIQ 379
           L++
Sbjct: 78  LVE 80

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>RNF37_MOUSE (Q925F4) RING finger protein 37 (Ubiquitin-conjugating enzyme|
           7-interacting protein 5) (UbcM4-interacting protein 5)
           (U-box domain-containing protein 5)
          Length = 539

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +2

Query: 173 EVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAA---DRE 343
           +VP  FL PI++EIM  P+ L SG   D+ ++E+   ++       +    G A     +
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQSQ 317

Query: 344 PTPNHTLRRLIQGWCAVHAV 403
           P P+ +L+  I  +   H++
Sbjct: 318 PLPHPSLKARIDRFLLQHSI 337

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>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)|
          Length = 610

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRL 373
           CP+ +E+ +DPV ++ G  + R  I++         CP  K+ +   DR+ T N  L  L
Sbjct: 146 CPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESI--TDRKYTINRVLANL 203

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>RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugating enzyme|
           7-interacting protein 5) (U-box domain-containing
           protein 5)
          Length = 541

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 173 EVPSYFLCPISMEIMRDPVTLSSGITYDRESIER 274
           +VP  FL PI++EIM  P+ L SG   D+ ++E+
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEK 291

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>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)|
          Length = 609

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRL 373
           CP+ +E+ +DPV ++ G  + R  I++         CP  ++ +   DR+ T N  L  L
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESI--TDRKYTINRVLANL 202

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>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)|
          Length = 467

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIER-WVFTDGHGECPMTKQQLGAADREPTPNHTLRR 370
           C I ++   DPV    G  + RE I R W   +G   CP  ++   +A R   PN  L +
Sbjct: 16  CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECREL--SAQRNLRPNRPLAK 73

Query: 371 LI-------------QGWCAVH 397
           +              QG CA H
Sbjct: 74  MAEMARRLHPPSPVPQGVCAAH 95

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>COABC_SYNY3 (P73881) Coenzyme A biosynthesis bifunctional protein coaBC|
           (DNA/pantothenate metabolism flavoprotein) [Includes:
           Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)
           (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC
           6.3.2.5) (Phosp
          Length = 402

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 31/97 (31%), Positives = 41/97 (42%)
 Frame = -2

Query: 532 ALGDDVRELPEGRHQQVVAPPGRVHDGFHARRIDGSARGGEPLDRVHRAPALDESAERVV 353
           A+  ++++L   R   ++AP G    G  A    G  R  EP   +HR  AL        
Sbjct: 133 AVQRNLQQLLGDRRYHLLAPNG----GLLACDRRGVGRLAEPAQIMHRLQAL-------- 180

Query: 352 GRGLPVGGAELLLGHRALSMAVGEHPALDAFPVVGDP 242
              L  GG E L G R L  A G    LDA   +G+P
Sbjct: 181 ---LFTGGQEDLRGKRILITAGGTQEYLDAVRFIGNP 214

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
 Frame = -2

Query: 433 DGSARGGEPLDRVHRAPALDESAERVVGRGLPVGGAEL-----------LLGHRALSMAV 287
           DG  RG EP       PA        VGR +P GGA +           L GH   ++  
Sbjct: 528 DGPQRGAEP-------PA--------VGRAVPEGGARVKVRVPEPERGALAGHVLAAVHG 572

Query: 286 GEHPALDAFPVVGD----PGRERHRVPHDLHGDRAQEVGRNLHLRRQPLH 149
           GEH          D    PG   HRV H +    AQ +G  +      LH
Sbjct: 573 GEHALAVGARRQRDRGPGPGAGAHRVAHVVLAAEAQRLGPGVQAGEGGLH 622

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>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)|
          Length = 500

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 173 EVPSYFLCPISMEIMRDPVTLSSGITYDRESIER-WVFTDGHGECPMTKQQLGAADREPT 349
           ++     CPI ++  +DPV++  G  + R  + R W    G   CP  +    +A     
Sbjct: 5   DIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHP--SAPAALR 62

Query: 350 PNHTLRRLIQ 379
           PN  L RL +
Sbjct: 63  PNWALARLTE 72

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = +3

Query: 189  SCARSPWRSCGTL*RSRPGSPTTGKASSAGCSP 287
            S A SPW S  T   S P SPT G + SAG SP
Sbjct: 1503 SPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSP 1535

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>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 31/109 (28%), Positives = 44/109 (40%)
 Frame = -3

Query: 543 RLQSLSATMSASSLRDATSRSWPRLAASTMVSTRAASMGARGVGNLSTACTAHQPWMSRR 364
           R +S S + S S  +  T+RS  R  ++++  TRA +  +R  G   T C        RR
Sbjct: 271 RHRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSRSRGRSPTTC--------RR 322

Query: 363 SVWLGVGSRSAAPSCCLVIGHSPWPSVNTQRSMLSRS*VIPDESVTGSR 217
                   RS +PS           S  TQRS  +R+         GSR
Sbjct: 323 GGGRSPRRRSRSPSTS--------SSCTTQRSQRARAESSTTRGARGSR 363

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>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1910

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/58 (37%), Positives = 26/58 (44%)
 Frame = -2

Query: 550 AAPVAIALGDDVRELPEGRHQQVVAPPGRVHDGFHARRIDGSARGGEPLDRVHRAPAL 377
           AA   I++ DD R  PE RH    A   R     H+R I  S R G      HR+P L
Sbjct: 162 AAYERISVRDDARSAPENRHIDEPAVYRRDEYDAHSREIQPSYRRG-----AHRSPRL 214

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>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of|
           interleukin 2 receptor)
          Length = 496

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESI----ERWVFTDGHGECPMTK 316
           CPI +E++++PV+     ++ R  I    E    TDG G CP+ +
Sbjct: 15  CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 59

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>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
 Frame = +2

Query: 152 EGLPSQVEVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHG--------ECP 307
           E L    E+     C I +E  R+PV++  G ++ R  I R     G G         CP
Sbjct: 15  EALALAAELQGEATCSICLEFFREPVSVECGHSFCRACIMRCWERPGAGTGTATRTLPCP 74

Query: 308 MTKQQLGAADREPTPNHTLRRLIQGWCAVHAVERFPTP 421
           +   Q     REP     LR   Q    V  + RF  P
Sbjct: 75  LPCPQC----REPARPSQLRPNRQLAAVVSLLRRFSLP 108

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>YR901_MIMIV (Q5UQZ7) Putative ankyrin repeat protein R901|
          Length = 361

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = +2

Query: 206 MEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLG-AADREPTPNHTLRRLIQG 382
           +E+++  V+L++ I  D +   RW   +GH E  + K  +G  A+     ++ +R     
Sbjct: 182 LEVVKYLVSLNANIRADNDYAVRWASQNGHLE--IVKYLVGQGANIRANDDYAVR----- 234

Query: 383 WCAVH----AVERFPTPRAPIDAARVETIVDAARRGHDLLVASL-RELADIVAESDC 538
           W +++     V+   +  A I A     +  A+R GH  +V  L    ADI  E++C
Sbjct: 235 WASINGHLEVVKYLVSQDADIRALDNSAVKCASRNGHLKVVEYLVSSGADITVENNC 291

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>A33_PLEWA (Q02084) Zinc-binding protein A33|
          Length = 624

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRL 373
           CP+   + ++PV L  G  + +  I++   +     CP  K+ L   +R+ T N  L  L
Sbjct: 162 CPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVL--TERKYTTNRVLANL 219

Query: 374 IQ 379
           ++
Sbjct: 220 VK 221

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>YR845_MIMIV (Q5UP14) Putative ankyrin repeat protein R845|
          Length = 224

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
 Frame = +2

Query: 206 MEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRLIQGW 385
           +EI+   VTL + I  D +S  RW   +GH +        G AD     +++LR   +  
Sbjct: 89  LEIVEYLVTLGADIRIDNDSAVRWASKNGHIKTVEFLVAKG-ADIRAKNDYSLRHSSKHG 147

Query: 386 CAVHAVERFPTPRAPIDAARVETIVDAARRGHDLLVASLREL-ADIVAESDC 538
             +  VE      A + A     I  A+ +GH  +V  L E  AD  A++DC
Sbjct: 148 -HIKMVEYLVAQGADVRADNDYAIKWASGKGHLEVVKYLVEKGADFRADNDC 198

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>G3O23_WHEAT (Q3I409) Gibberellin 3-beta-dioxygenase 2-3 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 2-3) (Gibberellin
           3-oxidase 2-3)
          Length = 369

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = -2

Query: 436 IDGSARGGEPLDRVHRAPALDESAERVVGRGLPVGGAELLLGH 308
           +DGS  GGEP D V      D  A   VG      GA LL+GH
Sbjct: 37  VDGSGAGGEP-DAVPVVDMRDPFAAEAVGLAAQDWGAFLLVGH 78

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>CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2|
           (Cullin-associated and neddylation-dissociated protein
           2) (p120 CAND2) (TBP-interacting protein TIP120B)
           (TBP-interacting protein of 120 kDa B) (TBP-interacting
           protein b)
          Length = 1273

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 389 AVHAVERFPTPRAPIDAARVETIV----DAARRGHDLLVASLRELADIVAESDCN 541
           A H V+R P PRAP   A + T++       R+    L A L  L  +V E  CN
Sbjct: 253 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLMPLV-EEFCN 306

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>BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finger protein 47)|
          Length = 450

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 143 EVMEGLPSQVEVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQ 322
           E ++    Q+ V S F C    +I+ +P TL+ G ++ R  +  W  +    ECP  +++
Sbjct: 18  EPLKSTGPQISV-SEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREK 76

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>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2601

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 546  RRLQSLSATMSASSLRDATSRSWPRLAASTMVSTRAASMGARGVGNLSTACTAHQ 382
            RR  ++SA   ASS    + RS P +        RAAS GAR V +  +  T H+
Sbjct: 1841 RRAPAVSAASLASSAHSRSVRSAPAM--------RAASAGARSVRSAQSGSTGHR 1887

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>CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein 2|
           (Cullin-associated and neddylation-dissociated protein
           2) (p120 CAND2) (TBP-interacting protein TIP120B)
           (TBP-interacting protein of 120 kDa B)
          Length = 1235

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 389 AVHAVERFPTPRAPIDAARVETIV----DAARRGHDLLVASLRELADIVAESDCN 541
           A H V+R P PRAP   A + T++       R+    L A L  L  +V E  CN
Sbjct: 215 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMV-EEFCN 268

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>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger|
           protein 92) (BIA1 protein)
          Length = 468

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIER-WVFTDGHGECPMTKQQLGAADREPTPNHTLRR 370
           C I ++   DPV    G  + RE I R W   +G   CP  ++   +  R   PN  L +
Sbjct: 16  CAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECREL--SPQRNLRPNRPLAK 73

Query: 371 LIQGWCAVHAVERFPTPRAP 430
           + +    +H     P    P
Sbjct: 74  MAEMARRLHPPSPVPQGVCP 93

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>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = +2

Query: 188 FLCPISMEIMRDPVTLSS---------GITYDRESIERWVFTDGHGECPMTKQQLGAADR 340
           F CPI +E +R+PVTL           G  +   S      + G   CP+ ++       
Sbjct: 7   FSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEPF-PDGL 65

Query: 341 EPTPNHTLRRLIQ 379
           +   NHTL  L+Q
Sbjct: 66  QLRKNHTLSELLQ 78

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>SWC3_YEAST (P31376) SWR1-complex protein 3|
          Length = 625

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 98  DKYIYRVRTRCGYDQEVMEGLPSQVEVPSYFLCPISMEIMRDPVTLSSGITYDR--ESIE 271
           D+Y  R +       E++ GLP+ VE+P+Y     +  +       +SG+ YD    S  
Sbjct: 56  DEYASRAKLATNRPFEIVAGLPASVELPNY-----NSSLTHPQSIKNSGVLYDSLVSSRR 110

Query: 272 RWV 280
            WV
Sbjct: 111 TWV 113

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>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting|
           protein) (RING finger protein 90)
          Length = 511

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 152 EGLPSQVEVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGA 331
           E L    E+     C I +E+ R+PV++  G ++ R  I R     G G        +GA
Sbjct: 15  EALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAG-------SVGA 67

Query: 332 ADREP 346
           A R P
Sbjct: 68  ATRAP 72

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>PHNA_PSEAE (P09785) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 530

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 23/131 (17%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRESIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRRL 373
           CP  +  +RD  TL      +    + W    G       ++ LG       P      L
Sbjct: 92  CPAQVTCLRDGDTLHWRFPQEESHADEWRRLHGLSSLEALRRVLGTLGDAEGPV-----L 146

Query: 374 IQGWCAVHAVERFPTPRAPIDAAR---------VETIVDA---ARR-----------GHD 484
           + G  +    E+F    AP + AR          E ++D    ARR           GHD
Sbjct: 147 LGGLFSFDLAEQFEPLPAPAEPARHCPDYLFLVPELLLDIDHLARRTSLQAFVHDPAGHD 206

Query: 485 LLVASLRELAD 517
            L ASLR+ AD
Sbjct: 207 RLAASLRQCAD 217

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>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +2

Query: 194 CPISMEIMRDPVTLSSGITYDRE-SIERWVFTDGHGECPMTKQQLGAADREPTPNHTLRR 370
           C I ++ +RDPVT+  G  + R  + +    + G   CP+ K        +P     +R 
Sbjct: 16  CSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCK--------KPFTKENIRP 67

Query: 371 LIQGWCAVHAVERF--PTPRAPIDAAR 445
           + Q    V  +ER    T R P + AR
Sbjct: 68  VWQLASLVENIERLKVDTGRQPGEVAR 94

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>TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger protein 9)|
           (Hematopoietic RING finger 1)
          Length = 489

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +2

Query: 149 MEGLPSQVEVPSYFLCPISMEIMRDPVTLSSGITYDRESIERWVFTDGHG-----ECPMT 313
           M   PS   +     CPI    +R+PVT+  G  + R  + R+    G        CP+ 
Sbjct: 1   MASAPSVTSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLC 60

Query: 314 KQ 319
           K+
Sbjct: 61  KE 62

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>ACHB_HUMAN (P11230) Acetylcholine receptor protein, beta subunit precursor|
          Length = 501

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = -2

Query: 313 GHRALSMAVGEHPALDAFPVVGDPGRERHRVPHDLHGDRA---QEVGRNLHLRRQPLHYF 143
           GH+ + +  G       + ++  P R   + P D  G R    QEV   L +RR+PL Y 
Sbjct: 191 GHQEIHIHEGTFIENGQWEIIHKPSR-LIQPPGDPRGGREGQRQEVIFYLIIRRKPLFYL 249

Query: 142 LVVSAPC----THSVYIFVYLAMYTCMKLGEALY 53
           + V APC      ++++F YL      K+G +++
Sbjct: 250 VNVIAPCILITLLAIFVF-YLPPDAGEKMGLSIF 282

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>ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP|
           3) (Phosphodiesterase I/nucleotide pyrophosphatase 3)
           (Phosphodiesterase I beta) (PD-Ibeta) (CD203c antigen)
           [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1);
           Nucleotide p
          Length = 875

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 244 PGRERHRVPHDLHGDRAQEVGRNLHLRRQPLHY 146
           P    H +PHD     ++E+ RNL  R+   H+
Sbjct: 404 PRIRAHNIPHDFFSFNSEEIVRNLSCRKPDQHF 436

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>TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31|
          Length = 425

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 191 LCPISMEIMRDPVTLSSGITYDRESIERWVFTD-GHGECPMTKQQLGAADREPTPNHTLR 367
           +CPI ++I++ PVT+  G  +  + I +   T  G  +CP+ K  +         N  LR
Sbjct: 15  ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV--RKNAIRFNSLLR 72

Query: 368 RLIQGWCAVHAVE 406
            L++   A+ A E
Sbjct: 73  NLVEKIQALQASE 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,716,087
Number of Sequences: 219361
Number of extensions: 1565345
Number of successful extensions: 5599
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 5453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5594
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result