ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 289 bits (146), Expect = 5e-75 Identities = 262/298 (87%), Gaps = 2/298 (0%) Strand = Plus / Plus Query: 169 ggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgt 228 ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||| || Sbjct: 36 ggtggaggtgctgtcctacttcgtgtgcccgatctcgctggagatcatgcgggacccggt 95 Query: 229 gacgctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttcaccga 288 |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 96 gacgctgtcgacggggatcacctacgaccgggagagcatcgagcggtgggtgttcaccga 155 Query: 289 cggccatggagagtgcccgatgaccaagcagcagctcggcgcc-gccgaccgggagccca 347 |||||| || ||||||||| |||||||||||| ||| |||||| || ||||||||||||| Sbjct: 156 cggccacggcgagtgcccggtgaccaagcagcggct-ggcgccggcggaccgggagccca 214 Query: 348 cgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgaga 407 |||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct: 215 cgcccaaccacacgctccgccgcctcatacaggggtggtgcgccgtccacgccgtcgagc 274 Query: 408 ggttccccaccccgcgcgctcccatcgatgcggcgcgcgtggaaaccatcgtggacgc 465 | ||||||||||||||| | ||| |||| || || ||||| | ||||||||||||| Sbjct: 275 gcttccccaccccgcgcccccccgtcgacgccgcccgcgtcgccgccatcgtggacgc 332 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 503 agggagctcgcggacatcgtcgccgagagcgattgcaaccggcgctgcg 551 ||||||||||| |||||||| ||||||||||| |||||||||| |||| Sbjct: 388 agggagctcgccgacatcgttgccgagagcgaccgcaaccggcggtgcg 436
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 289 bits (146), Expect = 5e-75 Identities = 262/298 (87%), Gaps = 2/298 (0%) Strand = Plus / Minus Query: 169 ggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgt 228 ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||| || Sbjct: 54791 ggtggaggtgctgtcctacttcgtgtgcccgatctcgctggagatcatgcgggacccggt 54732 Query: 229 gacgctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttcaccga 288 |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 54731 gacgctgtcgacggggatcacctacgaccgggagagcatcgagcggtgggtgttcaccga 54672 Query: 289 cggccatggagagtgcccgatgaccaagcagcagctcggcgcc-gccgaccgggagccca 347 |||||| || ||||||||| |||||||||||| ||| |||||| || ||||||||||||| Sbjct: 54671 cggccacggcgagtgcccggtgaccaagcagcggct-ggcgccggcggaccgggagccca 54613 Query: 348 cgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgaga 407 |||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct: 54612 cgcccaaccacacgctccgccgcctcatacaggggtggtgcgccgtccacgccgtcgagc 54553 Query: 408 ggttccccaccccgcgcgctcccatcgatgcggcgcgcgtggaaaccatcgtggacgc 465 | ||||||||||||||| | ||| |||| || || ||||| | ||||||||||||| Sbjct: 54552 gcttccccaccccgcgcccccccgtcgacgccgcccgcgtcgccgccatcgtggacgc 54495 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 503 agggagctcgcggacatcgtcgccgagagcgattgcaaccggcgctgcg 551 ||||||||||| |||||||| ||||||||||| |||||||||| |||| Sbjct: 54439 agggagctcgccgacatcgttgccgagagcgaccgcaaccggcggtgcg 54391
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 289 bits (146), Expect = 5e-75 Identities = 262/298 (87%), Gaps = 2/298 (0%) Strand = Plus / Minus Query: 169 ggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgt 228 ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||| || Sbjct: 20620357 ggtggaggtgctgtcctacttcgtgtgcccgatctcgctggagatcatgcgggacccggt 20620298 Query: 229 gacgctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttcaccga 288 |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 20620297 gacgctgtcgacggggatcacctacgaccgggagagcatcgagcggtgggtgttcaccga 20620238 Query: 289 cggccatggagagtgcccgatgaccaagcagcagctcggcgcc-gccgaccgggagccca 347 |||||| || ||||||||| |||||||||||| ||| |||||| || ||||||||||||| Sbjct: 20620237 cggccacggcgagtgcccggtgaccaagcagcggct-ggcgccggcggaccgggagccca 20620179 Query: 348 cgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgaga 407 |||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct: 20620178 cgcccaaccacacgctccgccgcctcatacaggggtggtgcgccgtccacgccgtcgagc 20620119 Query: 408 ggttccccaccccgcgcgctcccatcgatgcggcgcgcgtggaaaccatcgtggacgc 465 | ||||||||||||||| | ||| |||| || || ||||| | ||||||||||||| Sbjct: 20620118 gcttccccaccccgcgcccccccgtcgacgccgcccgcgtcgccgccatcgtggacgc 20620061 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 168 aggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctg 227 |||||||||| |||||||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct: 35091129 aggtggaggtgccgtcctacttcgtgtgccccatctcgctgcagatcatgcgcgacccgg 35091070 Query: 228 tgacgctctcgtccgggatcacctacgaccgggaaagcatcgagcg 273 |||||||| | |||| |||||||||||||| || |||||||||| Sbjct: 35091069 tgacgctccccaccggcatcacctacgaccgcgacggcatcgagcg 35091024 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 347 acgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgag 406 ||||||||||| ||||| || ||||||||||||| |||||||| | |||||| || ||| Sbjct: 17127176 acgcccaaccaaacgctgcggcgactcatccaggcgtggtgcgctgcgcacgccgttgag 17127235 Query: 407 aggttccccaccccgcgc 424 | ||||||||||||||| Sbjct: 17127236 cgattccccaccccgcgc 17127253 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 503 agggagctcgcggacatcgtcgccgagagcgattgcaaccggcgctgcg 551 ||||||||||| |||||||| ||||||||||| |||||||||| |||| Sbjct: 20620005 agggagctcgccgacatcgttgccgagagcgaccgcaaccggcggtgcg 20619957 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 344 cccacgcccaaccacacgctccgccgactcatccag 379 ||||||||||||||||| || ||||| ||||||||| Sbjct: 35090962 cccacgcccaaccacaccctgcgccgcctcatccag 35090927
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 6e-19 Identities = 97/112 (86%) Strand = Plus / Minus Query: 172 ggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgac 231 |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 20002452 ggaggtgccgtcctacttcctgtgcccgatctcgctggagatcatgagggacccggtgac 20002393 Query: 232 gctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttc 283 ||| || | |||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 20002392 gctggcgacggggatcacctacgaccggagcagcatcgagcggtggatgttc 20002341 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 338 cgggagcccacgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcac 397 |||||| | ||||||||||||||||| || || |||||||||| |||||||| | |||| Sbjct: 20002271 cgggaggcgacgcccaaccacacgctgcggcggctcatccaggcgtggtgcgccgcgcac 20002212 Query: 398 gcggtcgagaggttccccaccccgcgc 424 || |||||||||||||||||||||||| Sbjct: 20002211 gccgtcgagaggttccccaccccgcgc 20002185 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcg 389 ||||||||||| |||||||| |||||||||| |||||||| Sbjct: 20608779 cccaaccacaccctccgccgcctcatccaggactggtgcg 20608740 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 179 ccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccc 225 |||||||||||| |||||||||||| | |||| | ||||||||||| Sbjct: 35358852 ccgtcctacttcgtgtgcccgatcttgaaggaggtgatgcgggaccc 35358898 Score = 44.1 bits (22), Expect = 0.48 Identities = 61/74 (82%) Strand = Plus / Minus Query: 188 ttcttgtgcccgatctccatggagatcatgcgggaccctgtgacgctctcgtccgggatc 247 ||||||||||||||||| |||| || ||| ||||||| |||||| || | |||||| Sbjct: 30825884 ttcttgtgcccgatctcgctggacatgatgagggaccccgtgacggcgccgacggggatc 30825825 Query: 248 acctacgaccggga 261 || ||||||||||| Sbjct: 30825824 acgtacgaccggga 30825811 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 tgcccgatctccatggagatcatg 217 |||||||||||||||||| ||||| Sbjct: 28370616 tgcccgatctccatggagctcatg 28370639
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 103 bits (52), Expect = 6e-19 Identities = 97/112 (86%) Strand = Plus / Minus Query: 172 ggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgac 231 |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 106573 ggaggtgccgtcctacttcctgtgcccgatctcgctggagatcatgagggacccggtgac 106514 Query: 232 gctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttc 283 ||| || | |||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 106513 gctggcgacggggatcacctacgaccggagcagcatcgagcggtggatgttc 106462 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 338 cgggagcccacgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcac 397 |||||| | ||||||||||||||||| || || |||||||||| |||||||| | |||| Sbjct: 106392 cgggaggcgacgcccaaccacacgctgcggcggctcatccaggcgtggtgcgccgcgcac 106333 Query: 398 gcggtcgagaggttccccaccccgcgc 424 || |||||||||||||||||||||||| Sbjct: 106332 gccgtcgagaggttccccaccccgcgc 106306
>dbj|AK108494.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G06, full insert sequence Length = 1643 Score = 103 bits (52), Expect = 6e-19 Identities = 97/112 (86%) Strand = Plus / Plus Query: 172 ggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgac 231 |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 119 ggaggtgccgtcctacttcctgtgcccgatctcgctggagatcatgagggacccggtgac 178 Query: 232 gctctcgtccgggatcacctacgaccgggaaagcatcgagcgctgggtgttc 283 ||| || | |||||||||||||||||| ||||||||||| ||| ||||| Sbjct: 179 gctggcgacggggatcacctacgaccggagcagcatcgagcggtggatgttc 230 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 338 cgggagcccacgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcac 397 |||||| | ||||||||||||||||| || || |||||||||| |||||||| | |||| Sbjct: 300 cgggaggcgacgcccaaccacacgctgcggcggctcatccaggcgtggtgcgccgcgcac 359 Query: 398 gcggtcgagaggttccccaccccgcgc 424 || |||||||||||||||||||||||| Sbjct: 360 gccgtcgagaggttccccaccccgcgc 386
>ref|XM_474426.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1242 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 168 aggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctg 227 |||||||||| |||||||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct: 29 aggtggaggtgccgtcctacttcgtgtgccccatctcgctgcagatcatgcgcgacccgg 88 Query: 228 tgacgctctcgtccgggatcacctacgaccgggaaagcatcgagcg 273 |||||||| | |||| |||||||||||||| || |||||||||| Sbjct: 89 tgacgctccccaccggcatcacctacgaccgcgacggcatcgagcg 134 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 344 cccacgcccaaccacacgctccgccgactcatccag 379 ||||||||||||||||| || ||||| ||||||||| Sbjct: 196 cccacgcccaaccacaccctgcgccgcctcatccag 231
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 168 aggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctg 227 |||||||||| |||||||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct: 27632 aggtggaggtgccgtcctacttcgtgtgccccatctcgctgcagatcatgcgcgacccgg 27573 Query: 228 tgacgctctcgtccgggatcacctacgaccgggaaagcatcgagcg 273 |||||||| | |||| |||||||||||||| || |||||||||| Sbjct: 27572 tgacgctccccaccggcatcacctacgaccgcgacggcatcgagcg 27527 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 344 cccacgcccaaccacacgctccgccgactcatccag 379 ||||||||||||||||| || ||||| ||||||||| Sbjct: 27465 cccacgcccaaccacaccctgcgccgcctcatccag 27430
>dbj|AK108418.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H10, full insert sequence Length = 1590 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 168 aggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctg 227 |||||||||| |||||||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct: 172 aggtggaggtgccgtcctacttcgtgtgccccatctcgctgcagatcatgcgcgacccgg 231 Query: 228 tgacgctctcgtccgggatcacctacgaccgggaaagcatcgagcg 273 |||||||| | |||| |||||||||||||| || |||||||||| Sbjct: 232 tgacgctccccaccggcatcacctacgaccgcgacggcatcgagcg 277 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 344 cccacgcccaaccacacgctccgccgactcatccag 379 ||||||||||||||||| || ||||| ||||||||| Sbjct: 339 cccacgcccaaccacaccctgcgccgcctcatccag 374
>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete sequence Length = 112897 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 168 aggtggaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctg 227 |||||||||| |||||||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct: 46224 aggtggaggtgccgtcctacttcgtgtgccccatctcgctgcagatcatgcgcgacccgg 46165 Query: 228 tgacgctctcgtccgggatcacctacgaccgggaaagcatcgagcg 273 |||||||| | |||| |||||||||||||| || |||||||||| Sbjct: 46164 tgacgctccccaccggcatcacctacgaccgcgacggcatcgagcg 46119 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 344 cccacgcccaaccacacgctccgccgactcatccag 379 ||||||||||||||||| || ||||| ||||||||| Sbjct: 46057 cccacgcccaaccacaccctgcgccgcctcatccag 46022
>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19, complete sequence Length = 169559 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 347 acgcccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgag 406 ||||||||||| ||||| || ||||||||||||| |||||||| | |||||| || ||| Sbjct: 71473 acgcccaaccaaacgctgcggcgactcatccaggcgtggtgcgctgcgcacgccgttgag 71532 Query: 407 aggttccccaccccgcgc 424 | ||||||||||||||| Sbjct: 71533 cgattccccaccccgcgc 71550
>ref|XM_466137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1272 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcg 389 ||||||||||| |||||||| |||||||||| |||||||| Sbjct: 238 cccaaccacaccctccgccgcctcatccaggactggtgcg 277
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21 Length = 137959 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcg 389 ||||||||||| |||||||| |||||||||| |||||||| Sbjct: 104337 cccaaccacaccctccgccgcctcatccaggactggtgcg 104298
>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0040I22 Length = 134273 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcg 389 ||||||||||| |||||||| |||||||||| |||||||| Sbjct: 5634 cccaaccacaccctccgccgcctcatccaggactggtgcg 5595
>ref|XM_468461.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2682 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 179 ccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccc 225 |||||||||||| |||||||||||| | |||| | ||||||||||| Sbjct: 2425 ccgtcctacttcgtgtgcccgatcttgaaggaggtgatgcgggaccc 2471
>ref|NM_190741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Plus Query: 173 gaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgacg 232 ||||| |||||||||||| | ||||||||||| || || ||||||| ||||| || ||| Sbjct: 193 gaggtgccgtcctacttcgtctgcccgatctcgctgcagctcatgcgcgaccccgtcacg 252 Query: 233 ctc 235 ||| Sbjct: 253 ctc 255 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 340 ggagcccacgcccaaccacacgctccgccgactcatccag 379 ||||| ||||||||||||||| || ||||| || |||||| Sbjct: 360 ggagctcacgcccaaccacaccctgcgccgcctgatccag 399
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 173 gaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgacg 232 ||||| |||||||||||| | ||||||||||| || || ||||||| ||||| || ||| Sbjct: 37458725 gaggtgccgtcctacttcgtctgcccgatctcgctgcagctcatgcgcgaccccgtcacg 37458666 Query: 233 ctc 235 ||| Sbjct: 37458665 ctc 37458663 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 340 ggagcccacgcccaaccacacgctccgccgactcatccag 379 ||||| ||||||||||||||| || ||||| || |||||| Sbjct: 37458558 ggagctcacgcccaaccacaccctgcgccgcctgatccag 37458519
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 173 gaggttccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccctgtgacg 232 ||||| |||||||||||| | ||||||||||| || || ||||||| ||||| || ||| Sbjct: 53262 gaggtgccgtcctacttcgtctgcccgatctcgctgcagctcatgcgcgaccccgtcacg 53203 Query: 233 ctc 235 ||| Sbjct: 53202 ctc 53200 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 340 ggagcccacgcccaaccacacgctccgccgactcatccag 379 ||||| ||||||||||||||| || ||||| || |||||| Sbjct: 53095 ggagctcacgcccaaccacaccctgcgccgcctgatccag 53056
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 179 ccgtcctacttcttgtgcccgatctccatggagatcatgcgggaccc 225 |||||||||||| |||||||||||| | |||| | ||||||||||| Sbjct: 19400 ccgtcctacttcgtgtgcccgatcttgaaggaggtgatgcgggaccc 19446
>ref|XM_467686.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 44.1 bits (22), Expect = 0.48 Identities = 61/74 (82%) Strand = Plus / Plus Query: 188 ttcttgtgcccgatctccatggagatcatgcgggaccctgtgacgctctcgtccgggatc 247 ||||||||||||||||| |||| || ||| ||||||| |||||| || | |||||| Sbjct: 127 ttcttgtgcccgatctcgctggacatgatgagggaccccgtgacggcgccgacggggatc 186 Query: 248 acctacgaccggga 261 || ||||||||||| Sbjct: 187 acgtacgaccggga 200
>ref|XM_472061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4584 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 347 acgcccaaccacacgctccgccgactcatccagg 380 ||||||||||| ||||| || ||||||||||||| Sbjct: 91 acgcccaaccaaacgctgcggcgactcatccagg 124
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 192 tgtgcccgatctccatggagatcatgcgggaccc 225 ||||||||||| |||||||| | ||||||||||| Sbjct: 10256161 tgtgcccgatcaccatggaggtgatgcgggaccc 10256128
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 agcagcagctcggcgccgccga 336 |||||||||||||||||||||| Sbjct: 4181855 agcagcagctcggcgccgccga 4181876
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 44.1 bits (22), Expect = 0.48 Identities = 61/74 (82%) Strand = Plus / Minus Query: 188 ttcttgtgcccgatctccatggagatcatgcgggaccctgtgacgctctcgtccgggatc 247 ||||||||||||||||| |||| || ||| ||||||| |||||| || | |||||| Sbjct: 9461 ttcttgtgcccgatctcgctggacatgatgagggaccccgtgacggcgccgacggggatc 9402 Query: 248 acctacgaccggga 261 || ||||||||||| Sbjct: 9401 acgtacgaccggga 9388
>dbj|AK099846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109F13, full insert sequence Length = 2864 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 192 tgtgcccgatctccatggagatcatgcgggaccc 225 ||||||||||| |||||||| | ||||||||||| Sbjct: 208 tgtgcccgatcaccatggaggtgatgcgggaccc 241
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 192 tgtgcccgatctccatggagatcatgcgggaccc 225 ||||||||||| |||||||| | ||||||||||| Sbjct: 10256043 tgtgcccgatcaccatggaggtgatgcgggaccc 10256010
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 192 tgtgcccgatctccatggagatcatgcgggaccc 225 ||||||||||| |||||||| | ||||||||||| Sbjct: 19080 tgtgcccgatcaccatggaggtgatgcgggaccc 19047
>dbj|BS000676.1| Pan troglodytes chromosome Y clone:PTFY-037C19, complete sequences Length = 38921 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 atagctagatagacaaatatatata 111 |||| |||||||||||||||||||| Sbjct: 32326 atagatagatagacaaatatatata 32302
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 catgcatgtgtacatagctag 94 ||||||||||||||||||||| Sbjct: 26839810 catgcatgtgtacatagctag 26839830
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 catgcatgtgtacatagctag 94 ||||||||||||||||||||| Sbjct: 183152 catgcatgtgtacatagctag 183172
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 catgcatgtgtacatagctag 94 ||||||||||||||||||||| Sbjct: 102600 catgcatgtgtacatagctag 102620
>ref|NM_115105.3| Arabidopsis thaliana ubiquitin-protein ligase AT3G52450 mRNA, complete cds Length = 1645 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 224 acctacgaccgagaaagcatcgag 247
>gb|BT020203.1| Arabidopsis thaliana At3g52450 mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 91 acctacgaccgagaaagcatcgag 114
>ref|XM_467235.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1490 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 tgcccgatctccatggagatcatg 217 |||||||||||||||||| ||||| Sbjct: 72 tgcccgatctccatggagctcatg 95
>gb|L07608.1|HS5ORILYT Murine cytomegalovirus lytic origin of replication DNA sequence Length = 4081 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 gggagctcgcggacatcgtcgccg 527 ||||||||||||||||||| |||| Sbjct: 92 gggagctcgcggacatcgtggccg 69
>gb|BT015763.1| Arabidopsis thaliana At3g52450 mRNA, complete cds Length = 1650 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 188 acctacgaccgagaaagcatcgag 211
>gb|AC145805.2| Xenopus tropicalis clone CH216-85O8, complete sequence Length = 166207 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tagatagacaaatatatata 111 |||||||||||||||||||| Sbjct: 13983 tagatagacaaatatatata 13964
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 cagcagctcggcgccgccgaccgg 340 |||||||||| ||||||||||||| Sbjct: 3494621 cagcagctcgacgccgccgaccgg 3494644
>emb|CR854911.13| Zebrafish DNA sequence from clone DKEY-46O18 in linkage group 9, complete sequence Length = 233574 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 tacatagctagatagacaaatata 107 ||||||| |||||||||||||||| Sbjct: 37750 tacatagatagatagacaaatata 37773
>emb|X67021.1|MCVMDBP Murine cytomegalovirus genes for major binding protein and ICP18.5 protein Length = 8238 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 gggagctcgcggacatcgtcgccg 527 ||||||||||||||||||| |||| Sbjct: 1394 gggagctcgcggacatcgtggccg 1417
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 gctcgcggacatcgtcgccg 527 |||||||||||||||||||| Sbjct: 1805146 gctcgcggacatcgtcgccg 1805127
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 gacatcgtcgccgagagcga 534 |||||||||||||||||||| Sbjct: 273160 gacatcgtcgccgagagcga 273179
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6 Length = 93443 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 24357 acctacgaccgagaaagcatcgag 24334
>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9, complete sequence Length = 210830 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 tacatagctagatagacaaatata 107 ||||||| |||||||||||||||| Sbjct: 26207 tacatagatagatagacaaatata 26184
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 tcgagcgctgggtgttcaccgacg 290 ||||||||||||||| |||||||| Sbjct: 1006390 tcgagcgctgggtgtacaccgacg 1006367
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgagagg 409 |||||||||||||| || || ||||||||| ||||||| |||||| ||||| || Sbjct: 116157 cccaaccacacgctacggcgggtcatccaggcagggtgcgccacgcacgccttcgagcgg 116216 Query: 410 ttccccaccccg 421 |||||||||||| Sbjct: 116217 ttccccaccccg 116228
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgagagg 409 |||||||||||||| || || ||||||||| ||||||| |||||| ||||| || Sbjct: 20681149 cccaaccacacgctacggcgggtcatccaggcagggtgcgccacgcacgccttcgagcgg 20681208 Query: 410 ttccccaccccg 421 |||||||||||| Sbjct: 20681209 ttccccaccccg 20681220
>emb|BX825026.1|CNS0A6TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1634 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 215 acctacgaccgagaaagcatcgag 238
>emb|BX823733.1|CNS0A6I8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZE01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1618 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 acctacgaccgggaaagcatcgag 271 ||||||||||| |||||||||||| Sbjct: 198 acctacgaccgagaaagcatcgag 221
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 tgcccgatctccatggagatcatg 217 |||||||||||||||||| ||||| Sbjct: 162373 tgcccgatctccatggagctcatg 162396
>dbj|AK110831.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A04, full insert sequence Length = 1489 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 tgcccgatctccatggagatcatg 217 |||||||||||||||||| ||||| Sbjct: 72 tgcccgatctccatggagctcatg 95
>emb|BX649408.3| Zebrafish DNA sequence from clone DKEYP-18C4 in linkage group 4, complete sequence Length = 96612 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tagatagacaaatatatata 111 |||||||||||||||||||| Sbjct: 92280 tagatagacaaatatatata 92261
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 gggagctcgcggacatcgtcgccg 527 ||||||||||||||||||| |||| Sbjct: 91821 gggagctcgcggacatcgtggccg 91798
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 350 cccaaccacacgctccgccgactcatccagggctggtgcgcggtgcacgcggtcgagagg 409 |||||||||||||| || || ||||||||| ||||||| |||||| ||||| || Sbjct: 20991384 cccaaccacacgctacggcgggtcatccaggcagggtgcgccacgcacgccttcgagcgg 20991443 Query: 410 ttccccaccccg 421 |||||||||||| Sbjct: 20991444 ttccccaccccg 20991455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,157,167 Number of Sequences: 3902068 Number of extensions: 4157167 Number of successful extensions: 79561 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78617 Number of HSP's gapped (non-prelim): 938 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
