Clone Name | bart32h02 |
---|---|
Clone Library Name | barley_pub |
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 119 bits (299), Expect = 5e-27 Identities = 58/132 (43%), Positives = 83/132 (62%) Frame = +3 Query: 183 TPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGG 362 T ++ + LL +S++NP F P+ +P +IV P + + + V C R IR+RSGG Sbjct: 48 TDTNSDYFKLLHASMQNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGG 107 Query: 363 HDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIGKASSVLGF 542 H YEGLSY + F ++D+ +L + +D + TAWV+SGA LGELYYAI +++ LGF Sbjct: 108 HSYEGLSYTA--DTPFVIVDMMNLNRISIDVLSETAWVESGATLGELYYAIAQSTDTLGF 165 Query: 543 PGGLCPTVGVGG 578 G CPTVG GG Sbjct: 166 TAGWCPTVGSGG 177
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 119 bits (298), Expect = 6e-27 Identities = 67/148 (45%), Positives = 89/148 (60%), Gaps = 2/148 (1%) Frame = +3 Query: 141 LSCLSAS-IPRQLVFTPSSPS-FTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAV 314 LSCL+ + + VF+ S S F L SI+NP F +P I+ P + + + Sbjct: 28 LSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTI 87 Query: 315 LCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQL 494 C R+ IR+RSGGH YEGLSY S F ++DL +L V +D ++ TAWV+SG+ L Sbjct: 88 RCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVESGSTL 145 Query: 495 GELYYAIGKASSVLGFPGGLCPTVGVGG 578 GELYYAI ++SS LGF G CPTVG GG Sbjct: 146 GELYYAITESSSKLGFTAGWCPTVGTGG 173
>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)| Length = 458 Score = 41.6 bits (96), Expect = 0.002 Identities = 33/106 (31%), Positives = 46/106 (43%) Frame = +3 Query: 261 RPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRS 440 RP I +A V +V +GL I VRSGGH+ G + + VLDL + S Sbjct: 37 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN----DGGIVLDLRLMNS 92 Query: 441 VRVDAQAATAWVDSGAQLGELYYAIGKASSVLGFPGGLCPTVGVGG 578 + +D + A + G G+L K L G+ P VG G Sbjct: 93 IHIDTAGSRARIGGGVISGDLVKEAAKFG--LAAVTGMHPKVGFCG 136
>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)| Length = 447 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/77 (31%), Positives = 37/77 (48%) Frame = +3 Query: 261 RPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRS 440 RP Y+V + V AAV + V + GH SV A+ +++ + Sbjct: 29 RPAYVVEAADEQEVAAAVRLAAEQKRPVGVMATGHG------PSVSADDAVLVNTRRMEG 82 Query: 441 VRVDAQAATAWVDSGAQ 491 V VDA ATAW+++GA+ Sbjct: 83 VSVDAARATAWIEAGAR 99
>MPAG4_DACGL (P82946) Major pollen allergen Dac g 4 (Fragments)| Length = 55 Score = 37.0 bits (84), Expect = 0.041 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +3 Query: 456 QAATAWVDSGAQLGELYYAI 515 QA TAWVDSGAQLGEL Y + Sbjct: 23 QARTAWVDSGAQLGELSYGV 42
>ESR1_SPAAU (Q9PVZ9) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 579 Score = 34.7 bits (78), Expect = 0.20 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G SD L L + LVF PSSP +P ++ + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPHLSPFMQPANHH---YLETTSTPIYS 99 Query: 276 VTPTNASHVQAAVLCG 323 V P++ V CG Sbjct: 100 V-PSSQHSVSREDQCG 114
>ESR1_ORENI (Q9YH33) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 585 Score = 33.5 bits (75), Expect = 0.45 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 33.5 bits (75), Expect = 0.45 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>MURC_DEIRA (Q9RWN9) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 482 Score = 32.7 bits (73), Expect = 0.77 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 14/110 (12%) Frame = +3 Query: 288 NASHVQAAVLCGRRSGLRIRVRSGGHDY-------EGLSYRSVRAEAFAVLDLSSLRSVR 446 NA+ V +AV R++G R+RV H Y L+ + A+ VLD+++ Sbjct: 359 NATKVASAVQAARQTGRRVRVVFQPHRYLRTQQSWPRLADALMDADEVLVLDIAAASETP 418 Query: 447 VDAQAATAWVDSGAQLG--ELYYAIGKASSVLGF-----PGGLCPTVGVG 575 ++ AT D Q G ++Y +A+ V PG + T+G G Sbjct: 419 IEGVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQPGDIIVTMGAG 468
>YEK3_SCHPO (O36015) Putative ribosomal RNA methyltransferase C4F10.03c (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) Length = 285 Score = 31.6 bits (70), Expect = 1.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 234 PKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSG 335 P F P +PL ++ PTNA + + CG G Sbjct: 210 PSNFQPDLTKPLCVIDPTNAHEIAPFIACGDLDG 243
>ESR1_PAGMA (O42132) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 581 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY- 272 Y++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPRLSPFMHPPTHH---YLETTSTPVYR 99 Query: 273 IVTPTNASHVQAAVLCG 323 P++ V CG Sbjct: 100 SSVPSSQQSVSREDQCG 116
>ALL5_APIGR (P81943) Allergen Api g 5 (Fragments)| Length = 86 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +3 Query: 429 SLRSVRVDAQAATAWVDSGAQLGELYYAI 515 +L++V D A TA V +GA LGE+YY I Sbjct: 24 NLKAVIADPVAKTAVVQAGATLGEVYYXI 52
>GGLO_BOVIN (Q3ZC33) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 30.8 bits (68), Expect = 2.9 Identities = 21/98 (21%), Positives = 40/98 (40%) Frame = +3 Query: 282 PTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQA 461 PT+ V+ + R+ R++V GGH ++ + F + R ++VD + Sbjct: 26 PTSVEEVREVLALARQQNKRVKVVGGGHSPSDIAC----TDGFMIHMGKMNRVLKVDTEK 81 Query: 462 ATAWVDSGAQLGELYYAIGKASSVLGFPGGLCPTVGVG 575 V++G L +L+ + K L G + G Sbjct: 82 KQVTVEAGILLADLHPQLDKHGLALSNLGAVSDVTAGG 119
>VIT2_FUNHE (Q98893) Vitellogenin-2 precursor (Vitellogenin II) (VTG II)| [Contains: Lipovitellin-1 (LV1); Phosvitin (PV); Lipovitellin-2 (LV2)] Length = 1687 Score = 30.4 bits (67), Expect = 3.8 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Frame = +3 Query: 153 SASIPRQLVFTPSSPS-FTP--LLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVL-- 317 +AS+ Q +P P F P LLKS I TPS Y V N+ +QA+VL Sbjct: 812 AASVEVQATISPPLPEDFHPAHLLKSDISMKASVTPSVSLHTYGVMGVNSPFIQASVLSR 871 Query: 318 ------CGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLD 422 ++ R+ + G Y+ L V+ A A L+ Sbjct: 872 AKDHAALPKKMEARLDIVKGYFSYQFLPVEGVKTIASARLE 912
>MIAA_MYCTU (P65352) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 314 Score = 30.4 bits (67), Expect = 3.8 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 14/101 (13%) Frame = +3 Query: 258 VRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHD----YEGLSY----------RSV 395 +RPL I+ PT A Q A+ R G R+ V D Y G+ R + Sbjct: 1 MRPLAIIGPTGAGKSQLALDVAARLGARVSVEIVNADAMQLYRGMDIGTAKLPVSERRGI 60 Query: 396 RAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIG 518 VLD++ +V +AA A +++ A G + +G Sbjct: 61 PHHQLDVLDVTETATVARYQRAAAADIEAIAARGAVPVVVG 101
>MIAA_MYCBO (P65353) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 314 Score = 30.4 bits (67), Expect = 3.8 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 14/101 (13%) Frame = +3 Query: 258 VRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHD----YEGLSY----------RSV 395 +RPL I+ PT A Q A+ R G R+ V D Y G+ R + Sbjct: 1 MRPLAIIGPTGAGKSQLALDVAARLGARVSVEIVNADAMQLYRGMDIGTAKLPVSERRGI 60 Query: 396 RAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIG 518 VLD++ +V +AA A +++ A G + +G Sbjct: 61 PHHQLDVLDVTETATVARYQRAAAADIEAIAARGAVPVVVG 101
>ESR1_ORYLA (P50241) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 620 Score = 30.4 bits (67), Expect = 3.8 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G S+ L L + LVF PSSP +P + + + +T P+Y Sbjct: 88 YSAPLETNGPPSEGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVYR 144 Query: 276 VTPTNASHVQAAVLCGRR 329 + AS CG R Sbjct: 145 SSHQGASREDQ---CGSR 159
>GGLO_PIG (Q8HXW0) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/98 (20%), Positives = 40/98 (40%) Frame = +3 Query: 282 PTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQA 461 PT+ ++ + R+ R++V GGH ++ + F + R ++VD + Sbjct: 26 PTSVEEIREVLALARQQNKRVKVVGGGHSPSDIAC----TDGFMIHMGKMNRVLKVDMEK 81 Query: 462 ATAWVDSGAQLGELYYAIGKASSVLGFPGGLCPTVGVG 575 V++G L +L+ + K L G + G Sbjct: 82 KQVTVEAGILLADLHPQLDKHGLALSNLGAVSDVTAGG 119
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.0 bits (66), Expect = 5.0 Identities = 35/145 (24%), Positives = 55/145 (37%) Frame = +3 Query: 99 ASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIV 278 AS +S SS A S L++S SS + + L SSI + + ST Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161 Query: 279 TPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQ 458 + TN++ S L S L+ S+ + A SSL S + Sbjct: 162 SSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAA-SN 220 Query: 459 AATAWVDSGAQLGELYYAIGKASSV 533 +AT+ + + L A +SS+ Sbjct: 221 SATSSSLASSSLNSTTSATATSSSI 245
>GGLO_MOUSE (P58710) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/99 (23%), Positives = 43/99 (43%) Frame = +3 Query: 282 PTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQA 461 PT+ V+ + R+ +++V GGH ++ + F + R ++VD + Sbjct: 26 PTSVGEVREVLALARQQNKKVKVVGGGHSPSDIAC----TDGFMIHMGKMNRVLQVDKEK 81 Query: 462 ATAWVDSGAQLGELYYAIGKASSVLGFPGGLCPTVGVGG 578 V++G L +L+ + K L G + V VGG Sbjct: 82 KQVTVEAGILLTDLHPQLDKHGLALSNLGAV-SDVTVGG 119
>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor| (Polymorphic membrane protein I) Length = 878 Score = 29.3 bits (64), Expect = 8.5 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = +3 Query: 132 DAFLSCLSASIPRQLVFTP----SSPSFTPL---LKSSIRNPKFFTPSTVRPLYIVTPTN 290 DA LS L A L F P SS +PL L++S+ +P TP+T PL I T N Sbjct: 336 DAILSSLEARNGDILFFDPIVQESSSKESPLPSSLQASVTSP---TPATASPLVIQTSAN 392 Query: 291 AS 296 S Sbjct: 393 RS 394
>E2AK3_MOUSE (Q9Z2B5) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1114 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = -3 Query: 572 DADGRAQAAGEPEHAAGLPDRIIELAELGSGVHPRGRRL 456 DA+ AAGEPE A PD +EL PRGR L Sbjct: 70 DAEALPAAAGEPESRATEPDDDVEL-------RPRGRSL 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,116,640 Number of Sequences: 219361 Number of extensions: 908036 Number of successful extensions: 3665 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3320 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3575 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)