Clone Name | bart32g04 |
---|---|
Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 132 bits (333), Expect = 5e-31 Identities = 70/150 (46%), Positives = 93/150 (62%), Gaps = 4/150 (2%) Frame = +2 Query: 122 SRGALSQRARAPIVE-TPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQAN 298 S A + AP++ TP PAPAP +V L ELLS+AGP+ FL+YL T VI+TFQ+QAN Sbjct: 19 SASAKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQAN 78 Query: 299 DTKQGITVFAPQDSAFAALNETVLSNLTADQLRSLMLHHAMPRYYQXXXXXXXXXXXPVS 478 +T++GIT+F P+D AF A LSNLT DQL+ L+L HA+P YY PVS Sbjct: 79 NTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVS 138 Query: 479 MFA---YKVNVTYAAGTIGVVSGWATAKLA 559 FA Y + T +GT+ + S W K++ Sbjct: 139 TFAGGQYSLKFTDVSGTVRIDSLWTRTKVS 168
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 53.5 bits (127), Expect = 4e-07 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +2 Query: 179 APAPRHVELAELLSLAGPYG--KFLEYLTKTDVIKTFQSQANDTKQGITVFAPQDSAFAA 352 APAP ++ + L G F L + VIKTF+S ++G+TVFAP D AF A Sbjct: 180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKA 236 Query: 353 LNETVLSNLTADQLRSLMLHHAMPRY 430 L+NLT ++ SL+ +HA+ Y Sbjct: 237 RGVPDLTNLTQAEVVSLLEYHALAEY 262
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/93 (37%), Positives = 50/93 (53%) Frame = +2 Query: 152 APIVETPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQGITVFAP 331 AP V T PAP+ + LL AG F L + V+KT++S ++G+TVFAP Sbjct: 174 APGVLT-APAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAP 228 Query: 332 QDSAFAALNETVLSNLTADQLRSLMLHHAMPRY 430 D AF A L+ LT ++ SL+ +HA+ Y Sbjct: 229 SDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +2 Query: 8 RSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPTPAPA 187 R R +S A+P T S + + G +++ E+P+PAP Sbjct: 395 RRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPK 454 Query: 188 PRHVELAE 211 PR VEL+E Sbjct: 455 PRKVELSE 462
>PSF2_MOUSE (Q9D600) DNA replication complex GINS protein PSF2| Length = 185 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = +2 Query: 164 ETPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQ-----GITVFA 328 ET TP P+P ++E+ +LL + + K D I+T DT+ F Sbjct: 82 ETFTPVPSPHYMEITKLL-----LNHASDNIPKADTIRTLIKDLWDTRMAKLRVSADSFV 136 Query: 329 PQDSAFAALNETVLSNLTA 385 Q A A L+ L +++ Sbjct: 137 RQQEAHAKLDNLTLMEISS 155
>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional| corepressor Corl1) Length = 964 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Frame = -3 Query: 231 GPARESSSASSTWRGAGA--------GVGVSTIGARALWDSAPRESARQSNALTRAAALS 76 GP SS + T GAG G G G W P +A+ + A+ AAA + Sbjct: 420 GPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479 Query: 75 SI 70 ++ Sbjct: 480 TV 481
>RS3_ACHAX (P41117) 30S ribosomal protein S3| Length = 257 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 241 VPGVPHQDRRDQDVSEPGQRHQAGHHRVRASRLGVRRPQRDRAVQ 375 +PG H++ R + S H G + R SR G RR Q D A + Sbjct: 212 LPGQSHEELRKERQSSASSNHGGG--KRRPSRKGPRRSQEDAATE 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,005,754 Number of Sequences: 219361 Number of extensions: 936325 Number of successful extensions: 4562 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4541 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)