ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 pre... 132 5e-31
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 54 4e-07
3FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 49 7e-06
4SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 30 4.6
5PSF2_MOUSE (Q9D600) DNA replication complex GINS protein PSF2 29 7.9
6LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcript... 29 7.9
7RS3_ACHAX (P41117) 30S ribosomal protein S3 29 7.9

>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score =  132 bits (333), Expect = 5e-31
 Identities = 70/150 (46%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
 Frame = +2

Query: 122 SRGALSQRARAPIVE-TPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQAN 298
           S  A +    AP++  TP PAPAP +V L ELLS+AGP+  FL+YL  T VI+TFQ+QAN
Sbjct: 19  SASAKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQAN 78

Query: 299 DTKQGITVFAPQDSAFAALNETVLSNLTADQLRSLMLHHAMPRYYQXXXXXXXXXXXPVS 478
           +T++GIT+F P+D AF A     LSNLT DQL+ L+L HA+P YY            PVS
Sbjct: 79  NTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVS 138

Query: 479 MFA---YKVNVTYAAGTIGVVSGWATAKLA 559
            FA   Y +  T  +GT+ + S W   K++
Sbjct: 139 TFAGGQYSLKFTDVSGTVRIDSLWTRTKVS 168



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +2

Query: 179 APAPRHVELAELLSLAGPYG--KFLEYLTKTDVIKTFQSQANDTKQGITVFAPQDSAFAA 352
           APAP    ++ +  L    G   F   L  + VIKTF+S     ++G+TVFAP D AF A
Sbjct: 180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKA 236

Query: 353 LNETVLSNLTADQLRSLMLHHAMPRY 430
                L+NLT  ++ SL+ +HA+  Y
Sbjct: 237 RGVPDLTNLTQAEVVSLLEYHALAEY 262



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 35/93 (37%), Positives = 50/93 (53%)
 Frame = +2

Query: 152 APIVETPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQGITVFAP 331
           AP V T  PAP+     +  LL  AG    F   L  + V+KT++S     ++G+TVFAP
Sbjct: 174 APGVLT-APAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAP 228

Query: 332 QDSAFAALNETVLSNLTADQLRSLMLHHAMPRY 430
            D AF A     L+ LT  ++ SL+ +HA+  Y
Sbjct: 229 SDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 8   RSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPTPAPA 187
           R  R +S A+P   T  S    +               + G +++       E+P+PAP 
Sbjct: 395 RRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPK 454

Query: 188 PRHVELAE 211
           PR VEL+E
Sbjct: 455 PRKVELSE 462



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>PSF2_MOUSE (Q9D600) DNA replication complex GINS protein PSF2|
          Length = 185

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = +2

Query: 164 ETPTPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQ-----GITVFA 328
           ET TP P+P ++E+ +LL          + + K D I+T      DT+          F 
Sbjct: 82  ETFTPVPSPHYMEITKLL-----LNHASDNIPKADTIRTLIKDLWDTRMAKLRVSADSFV 136

Query: 329 PQDSAFAALNETVLSNLTA 385
            Q  A A L+   L  +++
Sbjct: 137 RQQEAHAKLDNLTLMEISS 155



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>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -3

Query: 231 GPARESSSASSTWRGAGA--------GVGVSTIGARALWDSAPRESARQSNALTRAAALS 76
           GP   SS  + T  GAG         G G    G    W   P  +A+ + A+  AAA +
Sbjct: 420 GPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479

Query: 75  SI 70
           ++
Sbjct: 480 TV 481



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>RS3_ACHAX (P41117) 30S ribosomal protein S3|
          Length = 257

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 241 VPGVPHQDRRDQDVSEPGQRHQAGHHRVRASRLGVRRPQRDRAVQ 375
           +PG  H++ R +  S     H  G  + R SR G RR Q D A +
Sbjct: 212 LPGQSHEELRKERQSSASSNHGGG--KRRPSRKGPRRSQEDAATE 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,005,754
Number of Sequences: 219361
Number of extensions: 936325
Number of successful extensions: 4562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4541
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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