ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32g02 |
|---|---|
| Clone Library Name | barley_pub |
>TALA_POVMA (P03073) Large T antigen| Length = 785 Score = 33.9 bits (76), Expect = 0.32 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 18/102 (17%) Frame = +3 Query: 222 CSYDDF-AAPSEPKRPDPVDKDFHESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKY--- 389 CS F A P + R DP DF S G + +Y ++ V S EKC + Y Sbjct: 270 CSQSSFNATPPKKAREDPAPSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLYDTI 329 Query: 390 --------------ADNLLRSLEGITSRLSQLEIYCYKLERS 473 +L L R+S ++ YC KL RS Sbjct: 330 GKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVKNYCSKLCRS 371
>ATF4_MOUSE (Q06507) Cyclic AMP-dependent transcription factor ATF-4| (C/EBP-related ATF) (C/ATF) (TAXREB67 homolog) Length = 349 Score = 28.1 bits (61), Expect(2) = 0.65 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 23 INPSFFLLSPHLQPKSTALPSPSLPLQASFPSRPKP*PWD 142 ++P +L SP P ++ P +LP P+P P+D Sbjct: 222 MSPESYLGSPQHSPSTSRAPPDNLPSPGGSRGSPRPKPYD 261 Score = 23.5 bits (49), Expect(2) = 0.65 Identities = 13/76 (17%), Positives = 34/76 (44%) Frame = +3 Query: 261 RPDPVDKDFHESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGITSRLSQ 440 + + +DK + + A Y Q A+++ L+ K ++K + L + + + Sbjct: 272 KTEKLDKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQY 331 Query: 441 LEIYCYKLERSIGELR 488 L+ ++ ++ G+ R Sbjct: 332 LKDLIEEVRKARGQKR 347
>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)| Length = 539 Score = 32.7 bits (73), Expect = 0.71 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 15/94 (15%) Frame = +3 Query: 318 KVYEQDSYAKEDVLSAVEKCMKKYAD----------NLLRSLEGITSRLSQLEIYCYKLE 467 K E D D LS E +K+ D +L + EG+ S++SQL+ +L Sbjct: 256 KKVESDLKDNRDKLSETETRLKETQDLVTKREKSISDLENAKEGLESQISQLQRKIQELL 315 Query: 468 RSIGELRADV-----LRDETDLRLKSLEKHLHEV 554 I EL ++ LR +++L+ K LE + E+ Sbjct: 316 AKIEELEEELENERKLRQKSELQRKELESRIEEL 349
>TALA_POVMC (P12905) Large T antigen| Length = 777 Score = 32.3 bits (72), Expect = 0.92 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +3 Query: 222 CSYDDF-AAPSEPKRPDPVDKDFHESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKY 389 CS F A P + R DP DF S G + +Y ++ V S EKC + Y Sbjct: 265 CSQSSFNATPPKKAREDPAPSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLY 321
>TALA_POVM3 (P03074) Large T antigen| Length = 782 Score = 32.3 bits (72), Expect = 0.92 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +3 Query: 222 CSYDDF-AAPSEPKRPDPVDKDFHESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKY 389 CS F A P + R DP DF S G + +Y ++ V S EKC + Y Sbjct: 270 CSQSSFNATPPKKAREDPAPSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLY 326
>K1H1_MOUSE (Q61765) Keratin, type I cuticular Ha1 (Hair keratin, type I Ha1)| (HKA-1) Length = 416 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 369 EKCMKKYADNLLRSLEG-ITSRLSQLEIYCYKLERSIGELRADVLRDETDLRL 524 + CM+ +N L E +S+LSQ++ +E +GE+RAD+ R + ++ Sbjct: 289 QHCMRNSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQV 341
>CCA_LISMO (Q8Y5Z8) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 393 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%) Frame = +3 Query: 225 SYDDFAAPSEPKRPDPVDKDFHESRFGRPAVKVYE----QDSYA-----KEDVLSAVEKC 377 +Y+DF PSE K +++D F A+ + E D ++ K + AV K Sbjct: 88 TYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFALHDPFSGQEAIKNKAIKAVGKA 147 Query: 378 MKKYADNLLRSLEGITSRLSQLE 446 +++ ++ LR + G+ LSQL+ Sbjct: 148 SERFHEDALRMMRGVRF-LSQLD 169
>DZIP1_MOUSE (Q8BMD2) Zinc finger protein DZIP1 (DAZ-interacting protein 1| homolog) Length = 852 Score = 31.2 bits (69), Expect = 2.1 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 13/99 (13%) Frame = +3 Query: 288 HESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGI-----------TSRL 434 H RF K YE +ED L ++ ++ + LL +E + TS+ Sbjct: 248 HAVRFS----KDYEMQKSKEEDFLKLFDRWKEEEKEKLLEEMEKVKGMFMREFKELTSKN 303 Query: 435 SQLEIYCYKLERSIGELRADV--LRDETDLRLKSLEKHL 545 S LE ++++S ++++++ LRD T+LR E HL Sbjct: 304 SALEYQLLEIQKSNIQIKSNIGTLRDVTELR----EDHL 338
>VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein VPS8| Length = 1274 Score = 30.4 bits (67), Expect = 3.5 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Frame = +3 Query: 246 PSEPKRPDPVDKDFHESRFGRPAVKVYEQDSYAKE--DVLSAVEKCMKKYADNLLRSLEG 419 PS +R D +K E+ G K Q E +++S+V ++ D +L ++ Sbjct: 1091 PSHDERKDLCNKLLQEAFLGLVRSKSSSQKDSGGEFWEIMSSV----LEHQDVILMKVQD 1146 Query: 420 ITSRLSQLEIYCYKLERSIGELRADVLRDETDLRLKSLEKHLHE 551 + L + YKLERS+ EL ++ D + ++ K L E Sbjct: 1147 LKQLLLNV-FNTYKLERSLSELIQKIIEDSSQDLVQQYRKFLSE 1189
>P85B_RAT (Q63788) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 722 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/80 (23%), Positives = 37/80 (46%) Frame = +3 Query: 291 ESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGITSRLSQLEIYCYKLER 470 E + R A++ + + E+ EKC K+Y + R EG + ++ + +L+ Sbjct: 467 ELQMKRTAIEAFNETILIFEEQGQTQEKCSKEYLERFRR--EGNEKEMQRILLNSERLKS 524 Query: 471 SIGELRADVLRDETDLRLKS 530 I E+ + E DLR ++ Sbjct: 525 RIAEIHESRTKLEQDLRAQA 544
>P85B_MOUSE (O08908) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 722 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/80 (23%), Positives = 37/80 (46%) Frame = +3 Query: 291 ESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGITSRLSQLEIYCYKLER 470 E + R A++ + + E+ EKC K+Y + R EG + ++ + +L+ Sbjct: 467 ELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRR--EGNEKEMQRILLNSERLKS 524 Query: 471 SIGELRADVLRDETDLRLKS 530 I E+ + E DLR ++ Sbjct: 525 RIAEIHESRTKLEQDLRAQA 544
>RPOB_BORPA (Q7W2G9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +3 Query: 390 ADNLLRSLEGITSRLSQ---LEIYCYKLERSIGELRADVLRDETDLRLKSLEKHLHEVH 557 AD +L L G+ SR++ LE++ + +G AD+LRDE + KS+ +L +V+ Sbjct: 1121 ADIVLNPL-GVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVY 1178
>RPOB_BORBR (Q7WRD9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +3 Query: 390 ADNLLRSLEGITSRLSQ---LEIYCYKLERSIGELRADVLRDETDLRLKSLEKHLHEVH 557 AD +L L G+ SR++ LE++ + +G AD+LRDE + KS+ +L +V+ Sbjct: 1121 ADIVLNPL-GVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVY 1178
>P55G_MOUSE (Q64143) Phosphatidylinositol 3-kinase regulatory gamma subunit| (PI3-kinase p85-gamma subunit) (PtdIns-3-kinase p85-gamma) (p55PIK) Length = 461 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/82 (24%), Positives = 39/82 (47%) Frame = +3 Query: 291 ESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGITSRLSQLEIYCYKLER 470 E + R A++ + + E+ E+ K Y + R EG + ++ + KL+ Sbjct: 208 EIQMKRTAIEAFNETIKIFEEQCHTQEQHSKDYIERFRR--EGNEKEIERIMMNYDKLKS 265 Query: 471 SIGELRADVLRDETDLRLKSLE 536 +GE+ LR E DL+ ++L+ Sbjct: 266 RLGEIHDSKLRLEQDLKKQALD 287
>P55G_HUMAN (Q92569) Phosphatidylinositol 3-kinase regulatory gamma subunit| (PI3-kinase p85-gamma subunit) (PtdIns-3-kinase p85-gamma) (p55PIK) Length = 461 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/82 (23%), Positives = 40/82 (48%) Frame = +3 Query: 291 ESRFGRPAVKVYEQDSYAKEDVLSAVEKCMKKYADNLLRSLEGITSRLSQLEIYCYKLER 470 E + R A++ + + E+ E+ K+Y + R EG + ++ + KL+ Sbjct: 208 EIQMKRTAIEAFNETIKIFEEQCHTQEQHSKEYIERFRR--EGNEKEIERIMMNYDKLKS 265 Query: 471 SIGELRADVLRDETDLRLKSLE 536 +GE+ +R E DL+ ++L+ Sbjct: 266 RLGEIHDSKMRLEQDLKKQALD 287
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 29.6 bits (65), Expect = 6.0 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Frame = +3 Query: 198 DFGTDDVLCSYDDFAAPSEPKRPDPVDKDFHESRFGRPAVKVYEQDSYAKEDVLSAVEKC 377 D D+ S DD A +E K D D+ + R + + S E+ AV K Sbjct: 410 DDSDDEGSDSSDDEPAAAEQKAMDIQDRSNADLVALRRTIYLTLMSSMDPEE---AVHKL 466 Query: 378 MKKYADNLLRSLEG-----ITSRLSQLEIYCYKLERSIGELRADVLRDETDLRLKSLEKH 542 MK NL + LEG + +Q Y K +IGE A + R TDL KS E + Sbjct: 467 MKI---NLPQGLEGELPSLVVESCAQERTYS-KFYGAIGERLAKINRLWTDLFEKSFEHY 522 Query: 543 LHEVH 557 +H Sbjct: 523 YTSIH 527
>CN039_HUMAN (Q8N1H7) Protein C14orf39| Length = 587 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Frame = +3 Query: 324 YEQDSYAKEDVLSAVEKCMKKYADN---LLRSLEGITSRLSQLEIYCYKLERSIGELR-- 488 YEQD KE+++ + KC + +N + R E I + +++ YC E R Sbjct: 20 YEQDISTKEEMIQRINKCCEDIKENKVTICRIHETINATDEEIDHYCKHSEEIKDNCRNW 79 Query: 489 ---ADVLRDETD 515 DV R D Sbjct: 80 KPTCDVFRKHED 91
>RPOB_BORPE (Q7W0R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1370 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = +3 Query: 390 ADNLLRSLEGITSRLSQ---LEIYCYKLERSIGELRADVLRDETDLRLKSLEKHLHEVH 557 AD +L L G+ SR++ LE++ + +G AD+LRDE + KS+ +L +V+ Sbjct: 1113 ADIVLNPL-GVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVY 1170
>UVRB_PSEF5 (Q4KF19) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 671 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +3 Query: 393 DNLLRSLEGITSRLSQLEIYCYKLERSIGELRADVLRDE-TDLRLKSL 533 +N LRS IT R+ QLE Y+L R + A +RDE T LR + L Sbjct: 622 ENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQMRDEITKLRERLL 669 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,596,044 Number of Sequences: 219361 Number of extensions: 930468 Number of successful extensions: 3718 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3600 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3714 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
