>SPOP_MOUSE (Q6ZWS8) Speckle-type POZ protein (PDX-1 C-terminal-interacting|
           factor 1) (PCIF1)
          Length = 374

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
 Frame = +3

Query: 153 ETVNGSHRFVIQGYSLAKGMGVGKHIASETFTVGG---YQWAIYFYPDGKNPEDNSAYVS 323
           + V  S+ + I  +S  +   +G+ I S TF+ G     +W +   P G + E++  Y+S
Sbjct: 28  KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLS 85

Query: 324 VFIALAS-EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFF 500
           +++ L S   ++VRA F+ ++ +  G+          +++ES       +G  WG+K+F 
Sbjct: 86  LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 137

Query: 501 RRTAL--ETSDFLKDDCLKI 554
           RR  L  E +  L DD L +
Sbjct: 138 RRDFLLDEANGLLPDDKLTL 157

>SPOP_HUMAN (O43791) Speckle-type POZ protein|
          Length = 374

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
 Frame = +3

Query: 153 ETVNGSHRFVIQGYSLAKGMGVGKHIASETFTVGG---YQWAIYFYPDGKNPEDNSAYVS 323
           + V  S+ + I  +S  +   +G+ I S TF+ G     +W +   P G + E++  Y+S
Sbjct: 28  KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLS 85

Query: 324 VFIALAS-EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFF 500
           +++ L S   ++VRA F+ ++ +  G+          +++ES       +G  WG+K+F 
Sbjct: 86  LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 137

Query: 501 RRTAL--ETSDFLKDDCLKI 554
           RR  L  E +  L DD L +
Sbjct: 138 RRDFLLDEANGLLPDDKLTL 157

>YNV5_CAEEL (P34568) Hypothetical protein T16H12.5|
          Length = 451

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
 Frame = +3

Query: 153 ETVNGSHRFVIQGYSLAKGMGVGKHIASETFTVG---GYQWAIYFYPDGKNPEDNSAYVS 323
           + V  ++ + I  +S  +   +G+ + S TF+ G     +W +   P G + E++  Y+S
Sbjct: 92  KVVKFNYMWTINNFSFCREE-MGEVLKSSTFSAGCNDKLKWCLRINPKGLD-EESRDYLS 149

Query: 324 VFIALAS-EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFF 500
           +++ L     ++VRA F+ ++ +   +          +++ES       +G  WG+K+F 
Sbjct: 150 LYLLLVQCNKSEVRAKFKFSILNAKREET--------KAMESQRAYRFVQGKDWGFKKFI 201

Query: 501 RRTAL--ETSDFLKDDCLKI 554
           RR  L  E +  L  D L I
Sbjct: 202 RRDFLLDEANGLLPGDRLSI 221

>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
 Frame = +3

Query: 168 SHRFVIQGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAS- 344
           S  FV++ +S  +       + S    V G  W +  YPDG N      Y+SVF+ L++ 
Sbjct: 278 SATFVLENFSTLRQRA--DPVYSPPLQVSGLCWRLKVYPDG-NGVVRGYYLSVFLELSAG 334

Query: 345 --EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTALE 518
             E +      E+  Q  +   K+ I   F    E G          WGY RFFR   L 
Sbjct: 335 LPETSKYEYRVEMVHQSCNDPTKNIIRE-FASDFEVG--------ECWGYNRFFRLDLLA 385

Query: 519 TSDFL 533
              +L
Sbjct: 386 NEGYL 390

>TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37|
          Length = 961

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
 Frame = +3

Query: 168 SHRFVIQGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAS- 344
           S  FV++ +S  +       + S    V G  W +  YPDG N      Y+SVF+ L++ 
Sbjct: 278 SATFVLENFSTLRQRA--DPVYSPPLQVSGLCWRLKVYPDG-NGVVRGYYLSVFLELSAG 334

Query: 345 --EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTALE 518
             E +      E+  Q  +   K+ I   F    E G          WGY RFFR   L 
Sbjct: 335 LPETSKYEYRVEMVHQSCNDPTKNIIRE-FASDFEVG--------ECWGYNRFFRLDLLA 385

Query: 519 TSDFL 533
              +L
Sbjct: 386 NEGYL 390

>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2|
          Length = 364

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
 Frame = +3

Query: 171 HRFVIQGYSLAKGMGVGKHIASETFTVGGYQ---WAIYFYPDGKNPEDNSAYVSVFIALA 341
           + + I  +S   G G+ + I S  F++   +   W +  +P+G + E++  Y+SV++ L 
Sbjct: 22  YEWTISNFSFCMG-GIRRKIKSPVFSLEANEEVAWCLRVHPNGFD-EESKDYLSVYLVLV 79

Query: 342 S-EGTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTAL 515
           +     VRA FE  +++  G+        + +SL    +  K     WG+ +F  R +L
Sbjct: 80  NCPKRQVRAKFEFWIKNSQGE-----KYQYTQSLNVHSFQRKQN---WGFSKFILRDSL 130

>VIPR1_MOUSE (P97751) Vasoactive intestinal polypeptide receptor 1 precursor|
           (VIP-R-1) (VPAC1) (Pituitary adenylate
           cyclase-activating polypeptide type II receptor) (PACAP
           type II receptor) (PACAP-R-2)
          Length = 459

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 GWASGSTSRARPSPWGDTSGLSTSTQTGRTPRITP 312
           GW+S S       PWG ++G+S STQ     R++P
Sbjct: 415 GWSSKSQH-----PWGGSNGVSCSTQVSMLTRVSP 444

>TDPZ1_MOUSE (Q717B3) TD and POZ domain-containing protein 1 (MAPP family|
           protein 2)
          Length = 365

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = +3

Query: 171 HRFVIQGYSLAKGMGVGKHIASETFTVGGYQ---WAIYFYPDGKNPEDNSAYVSVFIALA 341
           +++ I  +S   G G+ + I S  F+    +   W +  YP G + E    Y+SV++ L 
Sbjct: 22  YKWTISNFSFCMG-GIQRRITSPVFSSEENKEVAWCLRVYPKGADKESKD-YLSVYLVLL 79

Query: 342 SE-GTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTAL 515
           S   + V A F+  + +  G+   K  S            L Y  S  G+K+F  R  L
Sbjct: 80  SHLQSPVWAKFKFWIINSQGEKYQKTKSPIVECF------LTYEQS--GFKKFLPRDLL 130

>TDPZ3_MOUSE (Q717B4) TD and POZ domain-containing protein 3|
          Length = 365

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
 Frame = +3

Query: 171 HRFVIQGYSLAKGMGVGKHIASETFTVGGYQ---WAIYFYPDGKNPEDNSAYVSVFIALA 341
           + + I  +S   G    K I S  F++   +   W +  YP+G + E++  Y+SV++ L 
Sbjct: 22  YNWTISNFSFCMGAHQ-KSITSPVFSLEASKEVAWCLRLYPNGVD-EESKDYLSVYLELL 79

Query: 342 SE-GTDVRALFELTLQDQSGKGKHKIHSHFDRSLESGPYTLKYRGSMWGYKRFFRRTALE 518
           S   + + A FE  + +  G+       +  R + +    L+Y     G+K+F  R  L 
Sbjct: 80  SALESPILAKFEFWIINSQGE------KYQSRKISNVQCFLQYEHR--GFKKFLLRGLLL 131

Query: 519 TSD--FLKDD----CLKI 554
           +    FL +D    C K+
Sbjct: 132 SHQNWFLPEDQFTICCKV 149

>CO8B_HUMAN (P07358) Complement component C8 beta chain precursor (Complement|
           component 8 beta subunit)
          Length = 591

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
 Frame = +3

Query: 246 TVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLQDQSGKGKHKIHS- 422
           T G Y++ +  Y    + E N        +  S G  +  +FEL +  QS +GKH I   
Sbjct: 223 TQGKYEFILKEYESYSDFERNVTEKMASKSGFSFGFKIPGIFELGISSQSDRGKHYIRRT 282

Query: 423 -----------HFDRSLESGPYTLKYRGSMWGYK 491
                      H    LE   Y LK R  M  Y+
Sbjct: 283 KRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYE 316

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = -2

Query: 507 FAERTVCNPTW------SLGT*GCKAQTRASDRSGSGSCACPCRSGP 385
           +AE  +C  T+      S G     AQ+ A +R G G+  C CR  P
Sbjct: 142 YAEEQLCGHTFDGRAETSEGQGSTVAQSEAQNRGGQGNSQCQCREHP 188

>TRUB_ZYMMO (Q5NQ30) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 26/76 (34%), Positives = 37/76 (48%)
 Frame = +3

Query: 231 ASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLQDQSGKGKH 410
           A ET TV G    I+        +D S   + FIA  S+GT +R+L     +D + K   
Sbjct: 147 AGETVTVKGRDITIHEL----TLDDFSPDQATFIAKVSKGTYIRSL----ARDIAHKLNC 198

Query: 411 KIHSHFDRSLESGPYT 458
             H  + R L+SGP+T
Sbjct: 199 YGHVSYLRRLKSGPFT 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,313,096
Number of Sequences: 219361
Number of extensions: 1262934
Number of successful extensions: 4395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4391
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)