ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1275 Score = 607 bits (306), Expect = e-170 Identities = 414/450 (92%) Strand = Plus / Plus Query: 107 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 166 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 69 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 128 Query: 167 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 226 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 129 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 188 Query: 227 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 286 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 189 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 248 Query: 287 cgggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 346 |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 249 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 308 Query: 347 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 406 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 309 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 368 Query: 407 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagta 466 ||||||| |||||||||||||||| ||||| |||||||| || || |||||||||||||| Sbjct: 369 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccatacaccctcaagta 428 Query: 467 ccgaggctccatgtggggttacaaacggttctttcggcgaactgctcttgaaacatcgga 526 ||| ||||||||||||||||||||| |||||||||||||||| |||||||| || ||||| Sbjct: 429 ccgcggctccatgtggggttacaaaaggttctttcggcgaaccgctcttgagacgtcgga 488 Query: 527 ctttcttaaagatgattgtttgaagataaa 556 |||| | ||||||||||| ||||||||||| Sbjct: 489 ctttttgaaagatgattgcttgaagataaa 518 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 36 atggacgacgacgccggtgacgcctcgccgccgccgg 72 ||||||||||||||||| ||||||||||||||||||| Sbjct: 1 atggacgacgacgccggcgacgcctcgccgccgccgg 37
>dbj|AK120608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F13, full insert sequence Length = 1663 Score = 599 bits (302), Expect = e-168 Identities = 413/450 (91%) Strand = Plus / Plus Query: 107 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 166 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 167 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 226 Query: 167 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 226 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 227 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 286 Query: 227 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 286 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 287 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 346 Query: 287 cgggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 346 |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 347 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 406 Query: 347 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 406 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 407 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 466 Query: 407 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagta 466 ||||||| |||||||||||||||| ||||| ||||||| || || |||||||||||||| Sbjct: 467 gcacaaggtccactcccacttcgaccgctccatcgagtccggcccatacaccctcaagta 526 Query: 467 ccgaggctccatgtggggttacaaacggttctttcggcgaactgctcttgaaacatcgga 526 ||| ||||||||||||||||||||| |||||||||||||||| |||||||| || ||||| Sbjct: 527 ccgcggctccatgtggggttacaaaaggttctttcggcgaaccgctcttgagacgtcgga 586 Query: 527 ctttcttaaagatgattgtttgaagataaa 556 |||| | ||||||||||| ||||||||||| Sbjct: 587 ctttttgaaagatgattgcttgaagataaa 616 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 32 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 72 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 95 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 135
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 515 bits (260), Expect = e-143 Identities = 347/376 (92%) Strand = Plus / Minus Query: 107 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 166 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 3646390 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 3646331 Query: 167 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 226 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 3646330 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 3646271 Query: 227 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 286 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 3646270 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 3646211 Query: 287 cgggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 346 |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 3646210 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 3646151 Query: 347 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 406 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 3646150 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 3646091 Query: 407 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagta 466 ||||||| |||||||||||||||| ||||| |||||||| || || |||||||||||||| Sbjct: 3646090 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccatacaccctcaagta 3646031 Query: 467 ccgaggctccatgtgg 482 ||| |||||||||||| Sbjct: 3646030 ccgcggctccatgtgg 3646015 Score = 129 bits (65), Expect = 1e-26 Identities = 218/269 (81%) Strand = Plus / Plus Query: 201 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 260 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 27492185 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 27492244 Query: 261 cagtgggctatctacttctacccagacgggaagaaccccgaggataactccgcctacgtt 320 | ||||| |||||||||||||| |||||||||| |||||||||| | |||||||||| Sbjct: 27492245 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 27492304 Query: 321 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 380 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 27492305 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 27492364 Query: 381 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 440 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 27492365 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 27492424 Query: 441 gagtctgggccttacaccctcaagtaccg 469 ||| ||||| || |||||||||||||| Sbjct: 27492425 gagggcgggccatataccctcaagtaccg 27492453 Score = 129 bits (65), Expect = 1e-26 Identities = 203/249 (81%) Strand = Plus / Minus Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 84527 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 84468 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 84467 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 84408 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 84407 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 84348 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 |||||||||||||||| || || ||| || | || || ||||||||||||||||||||| Sbjct: 84347 gtccactcccacttcgaccgatccctccaggccggaccctacaccctcaagtaccgaggc 84288 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 84287 tccatgtgg 84279 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 ||||||||||| |||||||||||||||| |||||||| || ||||||||| | ||||||| Sbjct: 3645019 ggggttacaaaaggttctttcggcgaaccgctcttgagacgtcggactttttgaaagatg 3644960 Query: 541 attgtttgaagataaa 556 |||| ||||||||||| Sbjct: 3644959 attgcttgaagataaa 3644944 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 32 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 72 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3646462 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 3646422
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 515 bits (260), Expect = e-143 Identities = 347/376 (92%) Strand = Plus / Minus Query: 107 gtcgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacgg 166 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 115707 gtcgcgggacatggcggcgtcgccgaccagctcccgctccgtgacggagacggtgaacgg 115648 Query: 167 ctcccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagca 226 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 115647 ctcccaccgcttcgtgatccagggctactcgctcgccaaggggatgggcgtcgggaagca 115588 Query: 227 catcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccaga 286 |||||| |||||||||||| |||| || || ||||||||||| ||||||||||||| || Sbjct: 115587 catcgccagcgagaccttctccgtcggcggctaccagtgggcggtctacttctaccccga 115528 Query: 287 cgggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccga 346 |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 115527 cgggaagaaccccgaggacaactccgcctacgtctccgtcttcatcgccctcgcctccga 115468 Query: 347 gggcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaa 406 |||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| Sbjct: 115467 gggcaccgacgtccgcgccctcttcgagctcacgctgctcgaccagagcggcaagggcaa 115408 Query: 407 gcacaagatccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagta 466 ||||||| |||||||||||||||| ||||| |||||||| || || |||||||||||||| Sbjct: 115407 gcacaaggtccactcccacttcgaccgctccctcgagtccggcccatacaccctcaagta 115348 Query: 467 ccgaggctccatgtgg 482 ||| |||||||||||| Sbjct: 115347 ccgcggctccatgtgg 115332 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 ||||||||||| |||||||||||||||| |||||||| || ||||||||| | ||||||| Sbjct: 114336 ggggttacaaaaggttctttcggcgaaccgctcttgagacgtcggactttttgaaagatg 114277 Query: 541 attgtttgaagataaa 556 |||| ||||||||||| Sbjct: 114276 attgcttgaagataaa 114261 Score = 73.8 bits (37), Expect = 5e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 32 tcccatggacgacgacgccggtgacgcctcgccgccgccgg 72 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 115779 tcccatggacgacgacgccggcgacgcctcgccgccgccgg 115739
>dbj|AK068848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164G10, full insert sequence Length = 1650 Score = 474 bits (239), Expect = e-130 Identities = 392/443 (88%) Strand = Plus / Plus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 160 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 219 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 220 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 279 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 280 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 339 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 340 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 399 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 400 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 459 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 460 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 519 Query: 474 tccatgtggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttctt 533 |||||||||||||| ||| ||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 520 tccatgtggggttataaaaggttctttcggcggactgctcttgagacatcggattttctt 579 Query: 534 aaagatgattgtttgaagataaa 556 ||||| ||||| || |||||||| Sbjct: 580 aaagacgattgcttaaagataaa 602
>dbj|AK100829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123B19, full insert sequence Length = 1545 Score = 466 bits (235), Expect = e-128 Identities = 392/443 (88%), Gaps = 1/443 (0%) Strand = Plus / Plus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 209 gacatcgcggcgtcgccgacgagctcgcg-tcggtgacgcagacggtgaacgggtcgcac 267 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 268 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 327 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 328 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 387 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 388 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 447 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 448 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 507 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 508 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 567 Query: 474 tccatgtggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttctt 533 |||||||||||||| ||| ||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 568 tccatgtggggttataaaaggttctttcggcggactgctcttgagacatcggattttctt 627 Query: 534 aaagatgattgtttgaagataaa 556 ||||| ||||| || |||||||| Sbjct: 628 aaagacgattgcttaaagataaa 650
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 424 bits (214), Expect = e-115 Identities = 334/374 (89%) Strand = Plus / Minus Query: 109 cgcgcgacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggct 168 |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct: 45278 cgcgcgacatggtggcgtccccgaccagctcgcgctctgtgacgcagacggtgaacgggt 45219 Query: 169 cccaccgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcaca 228 |||||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||||||| Sbjct: 45218 cccaccacttcgtgatccagggctactcgctcgctaagggcatgggcgtggggaagcaca 45159 Query: 229 tcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacg 288 |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||| |||| Sbjct: 45158 tcgccagcgagacattcaccgtgggcggttaccagtgggcgatctacttctaccccgacg 45099 Query: 289 ggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagg 348 |||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| | Sbjct: 45098 ggaagaaccccgaggacaactccacctacgtctccgtcttcatcgcgctcgcgtccgacg 45039 Query: 349 gcactgacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagc 408 |||| ||||| ||||| ||||| ||||||||| | | ||||||||||| |||||||||| Sbjct: 45038 gcaccgacgtgcgcgcgctcttcgagctcacgctcctcgaccagagcggaaagggcaagc 44979 Query: 409 acaagatccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtacc 468 | ||| | ||||| |||||||| ||||| || ||||| ||||| |||||||||||||||| Sbjct: 44978 ataaggtgcactcgcacttcgaccgctccctagagtccgggccgtacaccctcaagtacc 44919 Query: 469 gaggctccatgtgg 482 | || ||||||||| Sbjct: 44918 gcggatccatgtgg 44905 Score = 79.8 bits (40), Expect = 9e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 |||| |||||| ||||||||||||| ||||||||||| ||| || ||||||||||||| Sbjct: 43584 ggggctacaaaaggttctttcggcgtactgctcttgagcaatcagattttcttaaagatg 43525 Query: 541 attgtttgaagataaa 556 |||| ||||||||||| Sbjct: 43524 attgcttgaagataaa 43509
>ref|XM_469951.1| Oryza sativa (japonica cultivar-group), mRNA Length = 566 Score = 391 bits (197), Expect = e-105 Identities = 326/369 (88%) Strand = Plus / Plus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 195 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 254 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 255 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 314 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 315 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 374 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 375 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 434 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 435 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 494 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 495 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 554 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 555 tccatgtgg 563
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 391 bits (197), Expect = e-105 Identities = 326/369 (88%) Strand = Plus / Minus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 89715 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 89656 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 89655 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 89596 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 89595 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 89536 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 89535 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 89476 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 89475 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 89416 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 89415 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 89356 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 89355 tccatgtgg 89347 Score = 228 bits (115), Expect = 2e-56 Identities = 298/359 (83%) Strand = Plus / Minus Query: 124 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 183 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 87938 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 87879 Query: 184 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 243 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 87878 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 87819 Query: 244 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgagg 303 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 87818 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 87759 Query: 304 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 363 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 87758 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 87699 Query: 364 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 423 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 87698 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 87639 Query: 424 acttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggctccatgtgg 482 | ||||| ||||| || |||||| | || |||||||||||| | || |||||||||||| Sbjct: 87638 agttcgaccgctcccttgagtctagcccctacaccctcaagaatcgcggctccatgtgg 87580 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 ||||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||| | Sbjct: 86520 ggggttataaaaggttctttcggcggactgctcttgagacatcggattttcttaaagacg 86461 Query: 541 attgtttgaagataaa 556 |||| || |||||||| Sbjct: 86460 attgcttaaagataaa 86445
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 391 bits (197), Expect = e-105 Identities = 326/369 (88%) Strand = Plus / Plus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 32654192 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 32654251 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 32654252 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 32654311 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 32654312 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 32654371 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 32654372 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 32654431 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 32654432 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 32654491 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 32654492 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 32654551 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 32654552 tccatgtgg 32654560 Score = 228 bits (115), Expect = 2e-56 Identities = 298/359 (83%) Strand = Plus / Plus Query: 124 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 183 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 32655969 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 32656028 Query: 184 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 243 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 32656029 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 32656088 Query: 244 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgagg 303 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 32656089 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 32656148 Query: 304 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 363 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 32656149 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 32656208 Query: 364 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 423 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 32656209 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 32656268 Query: 424 acttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggctccatgtgg 482 | ||||| ||||| || |||||| | || |||||||||||| | || |||||||||||| Sbjct: 32656269 agttcgaccgctcccttgagtctagcccctacaccctcaagaatcgcggctccatgtgg 32656327 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 ||||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||| | Sbjct: 32657387 ggggttataaaaggttctttcggcggactgctcttgagacatcggattttcttaaagacg 32657446 Query: 541 attgtttgaagataaa 556 |||| || |||||||| Sbjct: 32657447 attgcttaaagataaa 32657462
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 391 bits (197), Expect = e-105 Identities = 326/369 (88%) Strand = Plus / Plus Query: 114 gacatggcggcgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccac 173 ||||| |||||||| ||||| |||||||| || |||||| ||||||||||||| || ||| Sbjct: 32744702 gacatcgcggcgtcgccgacgagctcgcggtcggtgacgcagacggtgaacgggtcgcac 32744761 Query: 174 cgcttcgtgatccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcg 233 | |||||||||||||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct: 32744762 aggttcgtgatccaggggtactcgctggcgaaggggatgggggtggggaagcacatcgcg 32744821 Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 |||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct: 32744822 agcgagacgttcacggtgggagggtaccagtgggcgatctacttctaccccgacgggaag 32744881 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 32744882 aaccccgaggacaactccgcctacgtctccgtcttcatcgcgctcgcctccgagggcacc 32744941 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||||||||||||| |||||||||| Sbjct: 32744942 gacgtccgcgccctcttcgagctcaccctcctcgaccagagcggcaaggccaagcacaag 32745001 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 | |||||||||||||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct: 32745002 gtgcactcccacttcgaccgctccctcgagtccggcccctacaccctcaagtatcgcggc 32745061 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 32745062 tccatgtgg 32745070 Score = 228 bits (115), Expect = 2e-56 Identities = 298/359 (83%) Strand = Plus / Plus Query: 124 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 183 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 32746479 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 32746538 Query: 184 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 243 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 32746539 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 32746598 Query: 244 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgagg 303 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 32746599 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 32746658 Query: 304 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 363 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 32746659 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 32746718 Query: 364 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 423 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 32746719 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 32746778 Query: 424 acttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggctccatgtgg 482 | ||||| ||||| || |||||| | || |||||||||||| | || |||||||||||| Sbjct: 32746779 agttcgaccgctcccttgagtctagcccctacaccctcaagaatcgcggctccatgtgg 32746837 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 481 ggggttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatg 540 ||||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||| | Sbjct: 32747897 ggggttataaaaggttctttcggcggactgctcttgagacatcggattttcttaaagacg 32747956 Query: 541 attgtttgaagataaa 556 |||| || |||||||| Sbjct: 32747957 attgcttaaagataaa 32747972
>ref|XM_469952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 311 bits (157), Expect = 1e-81 Identities = 364/433 (84%) Strand = Plus / Plus Query: 124 cgtccccgaccagctcgcgctccgtgacggagacggtgaacggctcccaccgcttcgtga 183 |||| ||||| ||||| || || |||| | ||||||||||||| || ||| ||||||| Sbjct: 101 cgtcaccgacgagctcacggtcggtgatgcagacggtgaacgggtcgcacatgttcgtga 160 Query: 184 tccagggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagacct 243 ||||||||||||| | || ||||||||||| | |||||| |||||||||||||||| | Sbjct: 161 tccagggctactcgttggcgaaggggatggggattgggaagtacatcgcgagcgagacgt 220 Query: 244 tcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgagg 303 |||| ||||| || | ||||||||| ||||||||||| || |||||||||||||| |||| Sbjct: 221 tcacggtgggagggtgccagtgggcgatctacttctatcctgacgggaagaaccctgagg 280 Query: 304 ataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcg 363 | |||||||||||| | ||||||||||| |||||| ||||| |||| |||||||||| Sbjct: 281 acaactccgcctacatctccgtcttcattgcgctcatctccgacggcatcgacgtccgcg 340 Query: 364 ctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactccc 423 ||||| ||||||| | | | |||||||||||||||| |||||||||| ||||||| Sbjct: 341 tcctcttcgagctcaagctcctcgaccagagcggcaaggccaagcacaaggggcactccc 400 Query: 424 acttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggctccatgtggg 483 | ||||| ||||| || |||||| | || |||||||||||| | || ||||||||||||| Sbjct: 401 agttcgaccgctcccttgagtctagcccctacaccctcaagaatcgcggctccatgtggg 460 Query: 484 gttacaaacggttctttcggcgaactgctcttgaaacatcggactttcttaaagatgatt 543 |||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 461 gttataaaaggttctttcggcggactgctcttgagacatcggattttcttaaagacgatt 520 Query: 544 gtttgaagataaa 556 | || |||||||| Sbjct: 521 gcttaaagataaa 533
>ref|XM_479385.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1768 Score = 141 bits (71), Expect = 3e-30 Identities = 242/299 (80%) Strand = Plus / Plus Query: 201 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 260 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 491 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 550 Query: 261 cagtgggctatctacttctacccagacgggaagaaccccgaggataactccgcctacgtt 320 | ||||| |||||||||||||| |||||||||| |||||||||| | |||||||||| Sbjct: 551 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 610 Query: 321 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 380 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 611 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 670 Query: 381 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 440 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 671 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 730 Query: 441 gagtctgggccttacaccctcaagtaccgaggctccatgtggggttacaaacggttctt 499 ||| ||||| || |||||||||||||| || ||||||||||||||| || ||||| Sbjct: 731 gagggcgggccatataccctcaagtaccgggggagcatgtggggttacaagcgtttctt 789
>dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full insert sequence Length = 1768 Score = 141 bits (71), Expect = 3e-30 Identities = 242/299 (80%) Strand = Plus / Plus Query: 201 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 260 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 491 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 550 Query: 261 cagtgggctatctacttctacccagacgggaagaaccccgaggataactccgcctacgtt 320 | ||||| |||||||||||||| |||||||||| |||||||||| | |||||||||| Sbjct: 551 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 610 Query: 321 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 380 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 611 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 670 Query: 381 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 440 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 671 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 730 Query: 441 gagtctgggccttacaccctcaagtaccgaggctccatgtggggttacaaacggttctt 499 ||| ||||| || |||||||||||||| || ||||||||||||||| || ||||| Sbjct: 731 gagggcgggccatataccctcaagtaccgggggagcatgtggggttacaagcgtttctt 789
>ref|XM_476350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 137 bits (69), Expect = 4e-29 Identities = 210/257 (81%) Strand = Plus / Plus Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 359 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 418 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 419 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 478 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 479 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 538 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 |||||||||||||||| || || ||| || | || || ||||||||||||||||||||| Sbjct: 539 gtccactcccacttcgaccgatccctccaggccggaccctacaccctcaagtaccgaggc 598 Query: 474 tccatgtggggttacaa 490 ||||||||||| ||||| Sbjct: 599 tccatgtggggctacaa 615
>dbj|AK069837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F07, full insert sequence Length = 1712 Score = 137 bits (69), Expect = 4e-29 Identities = 210/257 (81%) Strand = Plus / Plus Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 358 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 417 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 418 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 477 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 478 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 537 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 |||||||||||||||| || || ||| || | || || ||||||||||||||||||||| Sbjct: 538 gtccactcccacttcgaccgatccctccaggccggaccctacaccctcaagtaccgaggc 597 Query: 474 tccatgtggggttacaa 490 ||||||||||| ||||| Sbjct: 598 tccatgtggggctacaa 614
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 129 bits (65), Expect = 1e-26 Identities = 218/269 (81%) Strand = Plus / Plus Query: 201 gccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcaccgtggggggatac 260 ||||||||||| || |||||||| ||||||| |||| ||||||||| || || ||| Sbjct: 56156 gccaaggggatcggggtcgggaaatacatcgcctccgagtgcttcaccgtcggcggctac 56215 Query: 261 cagtgggctatctacttctacccagacgggaagaaccccgaggataactccgcctacgtt 320 | ||||| |||||||||||||| |||||||||| |||||||||| | |||||||||| Sbjct: 56216 gactgggcgatctacttctaccccgacgggaagagccccgaggatggcgccgcctacgtc 56275 Query: 321 tccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctctctttgagctcacg 380 || ||||||| |||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct: 56276 tcgctcttcatagcgctcgccagcgagggcaccgacgtccgcgcgctcttcgagctcacg 56335 Query: 381 ttgcaggaccagagcggcaagggcaagcacaagatccactcccacttcgatcgctcgctc 440 | ||||||||||||||||| || ||||| | ||| ||||||| | | |||||| Sbjct: 56336 ctcgtcgaccagagcggcaaggggcaggacaaggtgcacacccactttgggaggtcgctc 56395 Query: 441 gagtctgggccttacaccctcaagtaccg 469 ||| ||||| || |||||||||||||| Sbjct: 56396 gagggcgggccatataccctcaagtaccg 56424
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 129 bits (65), Expect = 1e-26 Identities = 203/249 (81%) Strand = Plus / Minus Query: 234 agcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaag 293 ||||| |||||| | ||||| || ||||| ||||| ||||| ||||||| ||||| ||| Sbjct: 83826 agcgacaccttcgcggtgggcggctaccactgggccgtctacctctaccccgacggcaag 83767 Query: 294 aaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttccgagggcact 353 ||||||||||| ||| || |||||| ||||||||| |||| ||||| ||||| ||| | Sbjct: 83766 aaccccgaggacaacgccaactacgtctccgtcttcgtcgccctcgcctccgacggcgcc 83707 Query: 354 gacgtccgcgctctctttgagctcacgttgcaggaccagagcggcaagggcaagcacaag 413 ||||||||||| ||||| |||||||| | | |||||| |||| ||| |||||| Sbjct: 83706 gacgtccgcgccctcttcgagctcaccctcctcgaccagtccggccgcggccgccacaag 83647 Query: 414 atccactcccacttcgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggc 473 |||||||||||||||| || || ||| || | || || ||||||||||||||||||||| Sbjct: 83646 gtccactcccacttcgaccgatccctccaggccggaccctacaccctcaagtaccgaggc 83587 Query: 474 tccatgtgg 482 ||||||||| Sbjct: 83586 tccatgtgg 83578
>gb|BT016718.1| Zea mays clone Contig551 mRNA sequence Length = 1470 Score = 101 bits (51), Expect = 2e-18 Identities = 240/303 (79%) Strand = Plus / Plus Query: 188 gggctactccctcgccaaggggatgggcgtcgggaagcacatcgcgagcgagaccttcac 247 ||||||||||||||||||||| |||||| ||| || |||| ||||| |||| | Sbjct: 153 gggctactccctcgccaagggcatgggccccggccgctacctcgccagcgacgtcttcgc 212 Query: 248 cgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||| || |||||||| ||||| ||||| ||||||| ||||| |||||| ||||||| || Sbjct: 213 cgtcggaggataccactgggccgtctacctctaccccgacggcaagaacgccgaggacaa 272 Query: 308 ctccgcctacgtttccgtcttcatcgcgctcgcttccgagggcactgacgtccgcgctct 367 |||| |||||| ||||| ||| | || ||||||||||| |||| |||||||| || || Sbjct: 273 ctccaactacgtctccgttttcgttgccctcgcttccgacggcatcgacgtccgagccct 332 Query: 368 ctttgagctcacgttgcaggaccagagcggcaagggcaagcacaagatccactcccactt 427 ||| |||||||| | | |||||| |||| ||| |||||| | ||||| ||||| Sbjct: 333 cttcgagctcaccctcctcgaccagtccggccgcggctgccacaaggttcactcgcactt 392 Query: 428 cgatcgctcgctcgagtctgggccttacaccctcaagtaccgaggctccatgtggggtta 487 || ||||||||| ||| || || ||||||||||||||| | || |||||||||||||| Sbjct: 393 tgaccgctcgctcaagttcggcccatacaccctcaagtacaggggatccatgtggggtta 452 Query: 488 caa 490 ||| Sbjct: 453 caa 455
>dbj|AK058879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A05, full insert sequence Length = 1183 Score = 79.8 bits (40), Expect = 9e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 493 ggttctttcggcgaactgctcttgaaacatcggactttcttaaagatgattgtttgaaga 552 ||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || |||| Sbjct: 8 ggttctttcggcggactgctcttgagacatcggattttcttaaagacgattgcttaaaga 67 Query: 553 taaa 556 |||| Sbjct: 68 taaa 71
>gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-10f21, complete sequence Length = 97477 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 ||||| || |||||||| |||||||| || || ||||| ||||| || ||||||||||| Sbjct: 66993 cacatagccagcgagactttcaccgtcggcggttaccaatgggcaatttacttctacccc 67052 Query: 285 gacgggaagaaccccgaggataactccgcctacgtttccgtcttcatcgcgctcgcttc 343 ||||| || ||||| || ||||| || || || ||||| || ||||| || |||||||| Sbjct: 67053 gacggtaaaaacccagaagataattctgcttatgtttctgttttcattgctctcgcttc 67111
>emb|CR954186.2| Medicago truncatula chromosome 5 clone mth2-117e18, COMPLETE SEQUENCE Length = 113233 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 243 ttcaccgtggggggataccagtgggctatctacttctacccagacgggaagaaccccgag 302 |||||||| || || || |||||||| ||||||||||| || || |||||||| || ||| Sbjct: 40569 ttcaccgtcggagggtatcagtgggcgatctacttctatcccgatgggaagaatccggag 40510 Query: 303 gataactccgcctacgtttccgtcttcatcgcg 335 ||||| || || || ||||| || ||||||||| Sbjct: 40509 gataattctgcgtatgtttcggttttcatcgcg 40477
>ref|NM_111245.2| Arabidopsis thaliana ATBPM4; protein binding AT3G03740 (ATBPM4) mRNA, complete cds Length = 1627 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| || Sbjct: 200 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttctatcct 259 Query: 285 gacgggaagaaccccgaggataa 307 || || ||||| || |||||||| Sbjct: 260 gatggcaagaatcctgaggataa 282
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| || Sbjct: 77422 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttctatcct 77481 Query: 285 gacgggaagaaccccgaggataa 307 || || ||||| || |||||||| Sbjct: 77482 gatggcaagaatcctgaggataa 77504
>gb|AF367309.1| Arabidopsis thaliana AT3g03740/F20H23_23 mRNA, complete cds Length = 1581 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| || Sbjct: 200 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttctatcct 259 Query: 285 gacgggaagaaccccgaggataa 307 || || ||||| || |||||||| Sbjct: 260 gatggcaagaatcctgaggataa 282
>gb|AY059150.1| Arabidopsis thaliana AT3g03740/F20H23_23 mRNA, complete cds Length = 1398 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| || Sbjct: 199 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttctatcct 258 Query: 285 gacgggaagaaccccgaggataa 307 || || ||||| || |||||||| Sbjct: 259 gatggcaagaatcctgaggataa 281
>gb|AY084246.1| Arabidopsis thaliana clone 101153 mRNA, complete sequence Length = 1509 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 225 cacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttctaccca 284 |||||||| ||||| || |||||||| ||||| || || ||||||||||| ||||| || Sbjct: 123 cacatcgccagcgatactttcaccgtcgggggttatcaatgggctatctatttctatcct 182 Query: 285 gacgggaagaaccccgaggataa 307 || || ||||| || |||||||| Sbjct: 183 gatggcaagaatcctgaggataa 205
>gb|AY104286.1| Zea mays PCO106936 mRNA sequence Length = 1115 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 504 cgaactgctcttgaaacatcggactttcttaaagatgattg 544 |||||||| || |||||||| |||| ||||||||||||||| Sbjct: 26 cgaactgccctagaaacatcagactatcttaaagatgattg 66
>ref|NM_122109.2| Arabidopsis thaliana ATBPM5; protein binding AT5G21010 (ATBPM5) mRNA, complete cds Length = 1591 Score = 42.1 bits (21), Expect = 1.9 Identities = 72/89 (80%) Strand = Plus / Plus Query: 219 gggaagcacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttc 278 ||||||||||| ||||| || | ||| |||| || || || ||||||| |||| |||| Sbjct: 190 gggaagcacatagcgagtgataatttctccgtcggaggttatcagtgggggatcttcttc 249 Query: 279 tacccagacgggaagaaccccgaggataa 307 ||||| ||||| ||||| || |||||||| Sbjct: 250 tacccggacggtaagaatccggaggataa 278
>gb|AY042879.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1557 Score = 42.1 bits (21), Expect = 1.9 Identities = 72/89 (80%) Strand = Plus / Plus Query: 219 gggaagcacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttc 278 ||||||||||| ||||| || | ||| |||| || || || ||||||| |||| |||| Sbjct: 157 gggaagcacatagcgagtgataatttctccgtcggaggttatcagtgggggatcttcttc 216 Query: 279 tacccagacgggaagaaccccgaggataa 307 ||||| ||||| ||||| || |||||||| Sbjct: 217 tacccggacggtaagaatccggaggataa 245
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 Length = 96102 Score = 42.1 bits (21), Expect = 1.9 Identities = 72/89 (80%) Strand = Plus / Plus Query: 219 gggaagcacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttc 278 ||||||||||| ||||| || | ||| |||| || || || ||||||| |||| |||| Sbjct: 79892 gggaagcacatagcgagtgataatttctccgtcggaggttatcagtgggggatcttcttc 79951 Query: 279 tacccagacgggaagaaccccgaggataa 307 ||||| ||||| ||||| || |||||||| Sbjct: 79952 tacccggacggtaagaatccggaggataa 79980
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 42.1 bits (21), Expect = 1.9 Identities = 72/89 (80%) Strand = Plus / Minus Query: 219 gggaagcacatcgcgagcgagaccttcaccgtggggggataccagtgggctatctacttc 278 ||||||||||| ||||| || | ||| |||| || || || ||||||| |||| |||| Sbjct: 73822 gggaagcacatagcgagtgataatttctccgtcggaggttatcagtgggggatcttcttc 73763 Query: 279 tacccagacgggaagaaccccgaggataa 307 ||||| ||||| ||||| || |||||||| Sbjct: 73762 tacccggacggtaagaatccggaggataa 73734
>ref|NM_121905.2| Arabidopsis thaliana ATBPM1; protein binding AT5G19000 (ATBPM1) mRNA, complete cds Length = 1673 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 gtgggctatctacttctacccagacgggaagaaccccgaggataactc 310 |||||| |||||||| || ||||| ||||||| || ||||||||||| Sbjct: 494 gtgggcaatctacttttatccagatgggaagagtccggaggataactc 541
>ref|NM_001036439.1| Arabidopsis thaliana ATBPM3; protein binding AT2G39760 (ATBPM3) transcript variant AT2G39760.2 mRNA, complete cds Length = 1358 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 267 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 326 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 327 gaacccggagga 338
>ref|NM_129534.2| Arabidopsis thaliana ATBPM3; protein binding AT2G39760 (ATBPM3) transcript variant AT2G39760.1 mRNA, complete cds Length = 1622 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 267 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 326 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 327 gaacccggagga 338
>ref|NM_202507.1| Arabidopsis thaliana ATBPM2; protein binding AT3G06190 (ATBPM2) transcript variant AT3G06190.2 mRNA, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 534 tgggccatctacttctacccagatggaaagagtccagaggataa 577
>ref|NM_111494.2| Arabidopsis thaliana ATBPM2; protein binding AT3G06190 (ATBPM2) transcript variant AT3G06190.1 mRNA, complete cds Length = 1845 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 534 tgggccatctacttctacccagatggaaagagtccagaggataa 577
>ref|NM_120925.1| Arabidopsis thaliana ferredoxin reductase/ ferredoxin:thioredoxin reductase AT5G08410 mRNA, complete cds Length = 736 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 396 accgtaaccctaaccctagc 377
>gb|BT019314.1| Zea mays clone Contig987.F mRNA sequence Length = 786 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cgaccagctcgcgctccgtg 149 |||||||||||||||||||| Sbjct: 384 cgaccagctcgcgctccgtg 365
>gb|AC168220.1| Mus musculus BAC clone RP23-77O10 from chromosome 16, complete sequence Length = 215265 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 208870 ctaccgtaaccctaacccta 208851 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 208817 ctaccgtaaccctaacccta 208798 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 208770 ctaccgtaaccctaacccta 208751
>gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chromosome 15, complete sequence Length = 136531 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 36295 gtgatccagggctactccct 36314
>gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete sequence Length = 75970 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 agatgattgtttgaagataa 555 |||||||||||||||||||| Sbjct: 31292 agatgattgtttgaagataa 31273
>gb|AC140658.2| Homo sapiens chromosome 16 clone RP11-812E19, complete sequence Length = 188406 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 162277 gtgatccagggctactccct 162258
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence Length = 93478 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 42573 tgggccatctacttctacccagatggaaagagtccagaggataa 42530
>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence Length = 217553 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 205719 gtgatccagggctactccct 205700
>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence Length = 241627 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 20098 gtgatccagggctactccct 20117
>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence Length = 155343 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 49059 gtgatccagggctactccct 49040
>gb|AC154449.2| Mus musculus BAC clone RP24-168F5 from chromosome 16, complete sequence Length = 137395 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 128952 ctaccgtaaccctaacccta 128971 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 128905 ctaccgtaaccctaacccta 128924 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctaccgtaaccctaacccta 20 |||||||||||||||||||| Sbjct: 128852 ctaccgtaaccctaacccta 128871
>emb|AL133338.8| Human DNA sequence from clone RP3-467N11 on chromosome 6q16.1-16.3 Contains the 5' end of the RNAH gene for an RNA helicase and a CpG island, complete sequence Length = 120314 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cctcgccgccgccgggacct 77 |||||||||||||||||||| Sbjct: 69214 cctcgccgccgccgggacct 69195
>gb|BT000044.1| Arabidopsis thaliana unknown protein (At2g39760) mRNA, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 141 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 200 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 201 gaacccggagga 212
>gb|AY091449.1| Arabidopsis thaliana unknown protein (At3g06190) mRNA, complete cds Length = 1252 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 196 tgggccatctacttctacccagatggaaagagtccagaggataa 239
>gb|AY045891.1| Arabidopsis thaliana unknown protein (At3g06190) mRNA, complete cds Length = 1834 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 536 tgggccatctacttctacccagatggaaagagtccagaggataa 579
>gb|AC141587.2| Homo sapiens chromosome 16 clone RP11-1046E19, complete sequence Length = 186890 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 148452 gtgatccagggctactccct 148471
>emb|AL392174.1|ATF8L15 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project) Length = 125411 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 74006 accgtaaccctaaccctagc 74025
>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence Length = 187670 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 16390 gtgatccagggctactccct 16409
>gb|AY136451.1| Arabidopsis thaliana putative protein (At5g19000) mRNA, complete cds Length = 1661 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 gtgggctatctacttctacccagacgggaagaaccccgaggataactc 310 |||||| |||||||| || ||||| ||||||| || ||||||||||| Sbjct: 494 gtgggcaatctacttttatccagatgggaagagtccggaggataactc 541
>gb|AY128315.1| Arabidopsis thaliana unknown protein (At2g39760) mRNA, complete cds Length = 1479 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 269 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 328 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 329 gaacccggagga 340
>emb|CR596513.1| full-length cDNA clone CS0DN003YC08 of Adult brain of Homo sapiens (human) Length = 1501 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cctcgccgccgccgggacct 77 |||||||||||||||||||| Sbjct: 37 cctcgccgccgccgggacct 18
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 25886 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 25945 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 25946 gaacccggagga 25957
>gb|AC007028.3| Homo sapiens chromosome 16 clone RP5-835P2, complete sequence Length = 148807 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 60352 gtgatccagggctactccct 60333
>gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, complete sequence Length = 178738 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 37600 gtgatccagggctactccct 37581
>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster Length = 210954 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 agggcaagcacaagatccac 419 |||||||||||||||||||| Sbjct: 52915 agggcaagcacaagatccac 52896
>emb|BX819799.1|CNS0A8IM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1471 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 249 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 308 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 309 gaacccggagga 320
>emb|BX819797.1|CNS0A8HQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZD08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1504 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 260 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 319 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 320 gaacccggagga 331
>emb|BX823689.1|CNS0A7FE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS67ZE02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1675 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 264 tgggctatctacttctacccagacgggaagaaccccgaggataa 307 ||||| ||||||||||||||||| || |||| || |||||||| Sbjct: 515 tgggccatctacttctacccagatggaaagagtccagaggataa 558
>emb|BX831774.1|CNS09ZOW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH29ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1572 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 gtgggctatctacttctacccagacgggaagaaccccgaggataactc 310 |||||| |||||||| || ||||| ||||||| || ||||||||||| Sbjct: 441 gtgggcaatctacttttatccagatgggaagagtccggaggataactc 488
>gb|AC141272.3| Homo sapiens chromosome 16 clone RP11-1415K9, complete sequence Length = 185187 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 62847 gtgatccagggctactccct 62866
>gb|AC141248.2| Homo sapiens chromosome 16 clone RP11-1251B5, complete sequence Length = 173206 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 88163 gtgatccagggctactccct 88182
>gb|BT003708.1| Arabidopsis thaliana At5g08410 mRNA, complete cds Length = 555 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 341 accgtaaccctaaccctagc 322
>gb|AY088598.1| Arabidopsis thaliana clone 8256 mRNA, complete sequence Length = 1475 Score = 40.1 bits (20), Expect = 7.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gagcgagaccttcaccgtggggggataccagtgggctatctacttctacccagacgggaa 292 |||||| | |||| |||| || |||||| | ||||| || |||||||| || || ||||| Sbjct: 264 gagcgatatcttctccgttggtggatacgattgggcgatttacttctatcctgatgggaa 323 Query: 293 gaaccccgagga 304 |||||| ||||| Sbjct: 324 gaacccggagga 335
>gb|AY087076.1| Arabidopsis thaliana clone 31366 mRNA, complete sequence Length = 736 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 396 accgtaaccctaaccctagc 377
>gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, complete sequence Length = 165791 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 30832 gtgatccagggctactccct 30851
>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence Length = 93881 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 84448 gtgatccagggctactccct 84467
>gb|BT002593.1| Arabidopsis thaliana putative protein (At5g19000) mRNA, complete cds Length = 1335 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 gtgggctatctacttctacccagacgggaagaaccccgaggataactc 310 |||||| |||||||| || ||||| ||||||| || ||||||||||| Sbjct: 198 gtgggcaatctacttttatccagatgggaagagtccggaggataactc 245
>gb|AC136428.3| Homo sapiens chromosome 16 clone RP11-104C4, complete sequence Length = 193708 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 159160 gtgatccagggctactccct 159179
>gb|AC068809.1|AC068809 Genomic Sequence For Arabidopsis thaliana Clone T16G12 From Chromosome V, complete sequence Length = 82411 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 gtgggctatctacttctacccagacgggaagaaccccgaggataactc 310 |||||| |||||||| || ||||| ||||||| || ||||||||||| Sbjct: 9746 gtgggcaatctacttttatccagatgggaagagtccggaggataactc 9793
>dbj|AK117319.1| Arabidopsis thaliana At5g08410 mRNA for putative lipoic acid synthase, complete cds, clone: RAFL16-88-M05 Length = 729 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 389 accgtaaccctaaccctagc 370
>gb|AY106208.1| Zea mays PCO085865 mRNA sequence Length = 1008 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cgaccagctcgcgctccgtg 149 |||||||||||||||||||| Sbjct: 414 cgaccagctcgcgctccgtg 433
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 853972 gtgatccagggctactccct 853991
>dbj|AP005897.1| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-70K11, complete sequence Length = 10100 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 accgtaaccctaaccctagc 22 |||||||||||||||||||| Sbjct: 5585 accgtaaccctaaccctagc 5604
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccggtgacgcctcgccgc 66 |||||||||||||||||||| Sbjct: 1270915 cgccggtgacgcctcgccgc 1270896
>dbj|AB019441.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 5 of 5 Length = 157090 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gtgatccagggctactccct 199 |||||||||||||||||||| Sbjct: 53972 gtgatccagggctactccct 53991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,346,102 Number of Sequences: 3902068 Number of extensions: 3346102 Number of successful extensions: 81398 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80804 Number of HSP's gapped (non-prelim): 576 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
