Clone Name | bart32f05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 46.1 bits (23), Expect = 0.025 Identities = 29/31 (93%) Strand = Plus / Plus Query: 60 cgccggcgtgaaggagccaccgagccagtac 90 |||||||||| ||||||||||||||| |||| Sbjct: 48 cgccggcgtgcaggagccaccgagccggtac 78
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.025 Identities = 29/31 (93%) Strand = Plus / Plus Query: 60 cgccggcgtgaaggagccaccgagccagtac 90 |||||||||| ||||||||||||||| |||| Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3904573 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3892750 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3854694
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 46.1 bits (23), Expect = 0.025 Identities = 29/31 (93%) Strand = Plus / Plus Query: 60 cgccggcgtgaaggagccaccgagccagtac 90 |||||||||| ||||||||||||||| |||| Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 10449
>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full insert sequence Length = 1303 Score = 46.1 bits (23), Expect = 0.025 Identities = 29/31 (93%) Strand = Plus / Plus Query: 60 cgccggcgtgaaggagccaccgagccagtac 90 |||||||||| ||||||||||||||| |||| Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 150704 Score = 44.1 bits (22), Expect = 0.099 Identities = 46/54 (85%) Strand = Plus / Plus Query: 43 gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 96 ||||||||||| | || |||||||| ||||||||||||| | |||||||||| Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 112648
>ref|XM_415092.1| PREDICTED: Gallus gallus similar to matrix metalloproteinase 17; membrane-type-4 matrix metalloproteinase; membrane-type matrix metalloproteinase 4 (LOC416801), mRNA Length = 1380 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 taccgtcccgctgcggcgg 124 ||||||||||||||||||| Sbjct: 1191 taccgtcccgctgcggcgg 1209
>emb|X79381.1|THECH42 T.harzianum (IMI 206040) ech-42 gene Length = 2304 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 atcgtgcaagagcttgtgg 58 ||||||||||||||||||| Sbjct: 55 atcgtgcaagagcttgtgg 37
>emb|Z80358.1|THECH42P T.harzianum DNA for ech42 gene promotor Length = 829 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 atcgtgcaagagcttgtgg 58 ||||||||||||||||||| Sbjct: 532 atcgtgcaagagcttgtgg 514
>dbj|AB041753.1| Trichoderma harzianum chit-HAR3 gene for endochitinase-HAR3, complete cds Length = 2137 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 atcgtgcaagagcttgtgg 58 ||||||||||||||||||| Sbjct: 199 atcgtgcaagagcttgtgg 181 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 681,457 Number of Sequences: 3902068 Number of extensions: 681457 Number of successful extensions: 50849 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50791 Number of HSP's gapped (non-prelim): 58 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)