ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart32f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 424 e-115
2dbj|AK070987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 424 e-115
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
4dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5emb|CR383672.6| Zebrafish DNA sequence from clone DKEY-11P10 in ... 42 2.0
6emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, co... 42 2.0
7emb|AL928854.6| Zebrafish DNA sequence from clone CH211-59D2, co... 42 2.0
8gb|AC123684.8| Mus musculus chromosome 3, clone RP23-297F14, com... 40 8.0
9gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, com... 40 8.0
10ref|XM_978635.1| PREDICTED: Mus musculus synapse defective 1, Rh... 40 8.0
11ref|XM_916172.2| PREDICTED: Mus musculus similar to synapse defe... 40 8.0
12ref|XM_001004384.1| PREDICTED: Mus musculus synapse defective 1,... 40 8.0
13gb|DP000038.2| Colobus guereza target 106 genomic scaffold 40 8.0
14emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chro... 40 8.0
15emb|AL590675.3| Human DNA sequence from clone RP11-297O16 on chr... 40 8.0
16gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 8.0
17emb|AL136143.9| Human DNA sequence from clone RP3-399C22 on chro... 40 8.0
18emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 ... 40 8.0
19emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 8.0
20emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.0
21emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; se... 40 8.0
22emb|BX530411.5| Zebrafish DNA sequence from clone DKEY-147I23 in... 40 8.0
23gb|U39676.2| Caenorhabditis elegans cosmid C23F12, complete sequ... 40 8.0
24emb|BX296565.8| Zebrafish DNA sequence from clone CH211-269E2 in... 40 8.0
25gb|AE011701.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 8.0
26gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor ... 40 8.0
27gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold 40 8.0
28gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold 40 8.0
29gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, com... 40 8.0
30gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complet... 40 8.0
31gb|AC037198.7|AC037198 Homo sapiens chromosome 15 clone CTD-2033... 40 8.0
32gb|AC011306.9| Homo sapiens BAC clone RP11-479N15 from 2, comple... 40 8.0
33dbj|AB018114.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.0 
>dbj|AK073185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001M17, full
           insert sequence
          Length = 1340

 Score =  424 bits (214), Expect = e-115
 Identities = 466/550 (84%)
 Strand = Plus / Plus

                                                                       
Query: 37  ccatggcagcggcaggagccctggtcgtgtacagggcggtgttcgccgcgctcggctgcc 96
           ||||||| ||||| ||| || | | ||||||||||||||||||||| ||||| |||   |
Sbjct: 329 ccatggcggcggcgggatccataggcgtgtacagggcggtgttcgcggcgctgggcgctc 388

                                                                       
Query: 97  tcatggtgggcaccctggtgtacacctgcatcaccgatggctcgccgtttcgcatcgagc 156
           ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 389 tcatgctgggcaccctggtgtacacctgcgtcaccgacggctcgccgtttcgcctcgagc 448

                                                                       
Query: 157 tgctgactccgtggatcgtgacaacattggttgatttttatgtaaatatagcagcgattt 216
           |||| || |||||| | ||| ||||| || ||||||||||||| ||| |  | |||||||
Sbjct: 449 tgctcaccccgtggttggtggcaacactgattgatttttatgtcaatgtgactgcgattt 508

                                                                       
Query: 217 cgacttgggttgtctacaaggaaggaaattggattagttctatcttctgggtagtactgt 276
           ||||||||||| |||||||||||| |||||||||||||||| |||| |||||||| ||||
Sbjct: 509 cgacttgggttatctacaaggaagtaaattggattagttctttcttttgggtagttctgt 568

                                                                       
Query: 277 tgatttgtttcggcagtgctactacatgtgcttatattgttagcaagttatttgagataa 336
           ||   ||||| ||||||  | |||||||||||||| |||||   ||| | ||||| ||||
Sbjct: 569 tgtactgttttggcagtattgctacatgtgcttatgttgttgtgaagctttttgaaataa 628

                                                                       
Query: 337 catcttcagggccttcccaaaatccgcttgatcttttgttgctcaggcaagataatctac 396
            | |||| || ||||| ||| |||| ||||||||||| || ||||||||||   ||||| 
Sbjct: 629 aaacttccggaccttcacaagatccacttgatcttttattcctcaggcaaggagatctat 688

                                                                       
Query: 397 ccgaaaggaagtgttcttttgttgtcatcgggagaactattttcagcattttgggcatac 456
           ||||||| ||||  ||||||||  | || ||||||| ||||||||||||||||||   | 
Sbjct: 689 ccgaaagaaagtcctcttttgtcataattgggagaattattttcagcattttgggggcaa 748

                                                                       
Query: 457 tcatggctgcacttgtcacgtatactgtcattacagatggactgcctttcaggaaggatt 516
           | ||||||||| | || |  ||||||||||| || |||||||| |||||||||||||| |
Sbjct: 749 tgatggctgcagtcgtaatttatactgtcatcactgatggactacctttcaggaaggact 808

                                                                       
Query: 517 tgttgacaccgtggatggctgcaaccttaattgacttctatataaatgtctttgcaatat 576
           ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 tgttgaccccgtggatggcggcaaccttaattgacttctatataaatgtcttcgcaatat 868

                     
Query: 577 cggtatgggt 586
           ||||||||||
Sbjct: 869 cggtatgggt 878
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>dbj|AK070987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076E04, full
           insert sequence
          Length = 1018

 Score =  424 bits (214), Expect = e-115
 Identities = 466/550 (84%)
 Strand = Plus / Plus

                                                                       
Query: 37  ccatggcagcggcaggagccctggtcgtgtacagggcggtgttcgccgcgctcggctgcc 96
           ||||||| ||||| ||| || | | ||||||||||||||||||||| ||||| |||   |
Sbjct: 93  ccatggcggcggcgggatccataggcgtgtacagggcggtgttcgcggcgctgggcgctc 152

                                                                       
Query: 97  tcatggtgggcaccctggtgtacacctgcatcaccgatggctcgccgtttcgcatcgagc 156
           ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 153 tcatgctgggcaccctggtgtacacctgcgtcaccgacggctcgccgtttcgcctcgagc 212

                                                                       
Query: 157 tgctgactccgtggatcgtgacaacattggttgatttttatgtaaatatagcagcgattt 216
           |||| || |||||| | ||| ||||| || ||||||||||||| ||| |  | |||||||
Sbjct: 213 tgctcaccccgtggttggtggcaacactgattgatttttatgtcaatgtgactgcgattt 272

                                                                       
Query: 217 cgacttgggttgtctacaaggaaggaaattggattagttctatcttctgggtagtactgt 276
           ||||||||||| |||||||||||| |||||||||||||||| |||| |||||||| ||||
Sbjct: 273 cgacttgggttatctacaaggaagtaaattggattagttctttcttttgggtagttctgt 332

                                                                       
Query: 277 tgatttgtttcggcagtgctactacatgtgcttatattgttagcaagttatttgagataa 336
           ||   ||||| ||||||  | |||||||||||||| |||||   ||| | ||||| ||||
Sbjct: 333 tgtactgttttggcagtattgctacatgtgcttatgttgttgtgaagctttttgaaataa 392

                                                                       
Query: 337 catcttcagggccttcccaaaatccgcttgatcttttgttgctcaggcaagataatctac 396
            | |||| || ||||| ||| |||| ||||||||||| || ||||||||||   ||||| 
Sbjct: 393 aaacttccggaccttcacaagatccacttgatcttttattcctcaggcaaggagatctat 452

                                                                       
Query: 397 ccgaaaggaagtgttcttttgttgtcatcgggagaactattttcagcattttgggcatac 456
           ||||||| ||||  ||||||||  | || ||||||| ||||||||||||||||||   | 
Sbjct: 453 ccgaaagaaagtcctcttttgtcataattgggagaattattttcagcattttgggggcaa 512

                                                                       
Query: 457 tcatggctgcacttgtcacgtatactgtcattacagatggactgcctttcaggaaggatt 516
           | ||||||||| | || |  ||||||||||| || |||||||| |||||||||||||| |
Sbjct: 513 tgatggctgcagtcgtaatttatactgtcatcactgatggactacctttcaggaaggact 572

                                                                       
Query: 517 tgttgacaccgtggatggctgcaaccttaattgacttctatataaatgtctttgcaatat 576
           ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 573 tgttgaccccgtggatggcggcaaccttaattgacttctatataaatgtcttcgcaatat 632

                     
Query: 577 cggtatgggt 586
           ||||||||||
Sbjct: 633 cggtatgggt 642
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  129 bits (65), Expect = 1e-26
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 37       ccatggcagcggcaggagccctggtcgtgtacagggcggtgttcgccgcgctcggctgcc 96
                ||||||| ||||| ||| || | | ||||||||||||||||||||| ||||| |||   |
Sbjct: 22351550 ccatggcggcggcgggatccataggcgtgtacagggcggtgttcgcggcgctgggcgctc 22351609

                                                                            
Query: 97       tcatggtgggcaccctggtgtacacctgcatcaccgatggctcgccgtttcgcatcgagc 156
                ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 22351610 tcatgctgggcaccctggtgtacacctgcgtcaccgacggctcgccgtttcgcctcgagc 22351669

                             
Query: 157      tgctgactccgtg 169
                |||| || |||||
Sbjct: 22351670 tgctcaccccgtg 22351682



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                       
Query: 527      gtggatggctgcaaccttaattgacttctatataaatgtctttgcaatatcggta 581
                ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22354885 gtggatggcggcaaccttaattgacttctatataaatgtcttcgcaatatcggta 22354939



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 114/138 (82%)
 Strand = Plus / Plus

                                                                            
Query: 391      atctacccgaaaggaagtgttcttttgttgtcatcgggagaactattttcagcattttgg 450
                ||||| ||||||| ||||  ||||||||  | || ||||||| |||||||||||||||||
Sbjct: 22353841 atctatccgaaagaaagtcctcttttgtcataattgggagaattattttcagcattttgg 22353900

                                                                            
Query: 451      gcatactcatggctgcacttgtcacgtatactgtcattacagatggactgcctttcagga 510
                |   | | ||||||||| | || |  ||||||||||| || |||||||| ||||||||||
Sbjct: 22353901 gggcaatgatggctgcagtcgtaatttatactgtcatcactgatggactacctttcagga 22353960

                                  
Query: 511      aggatttgttgacaccgt 528
                |||| |||||||| ||||
Sbjct: 22353961 aggacttgttgaccccgt 22353978



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 218      gacttgggttgtctacaaggaaggaaattggattagttctatcttctgggtagtactgtt 277
                |||||||||| |||||||||||| |||||||||||||||| |||| |||||||| |||||
Sbjct: 22353043 gacttgggttatctacaaggaagtaaattggattagttctttcttttgggtagttctgtt 22353102

                 
Query: 278      g 278
                |
Sbjct: 22353103 g 22353103



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                            
Query: 298      ctacatgtgcttatattgttagcaagttatttgagataacatcttcagggccttcccaaa 357
                |||||||||||||| |||||   ||| | ||||| |||| | |||| || ||||| ||| 
Sbjct: 22353238 ctacatgtgcttatgttgttgtgaagctttttgaaataaaaacttccggaccttcacaag 22353297

                                          
Query: 358      atccgcttgatcttttgttgctcagg 383
                |||| ||||||||||| || ||||||
Sbjct: 22353298 atccacttgatcttttattcctcagg 22353323
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0566A10
          Length = 174367

 Score =  129 bits (65), Expect = 1e-26
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                          
Query: 37     ccatggcagcggcaggagccctggtcgtgtacagggcggtgttcgccgcgctcggctgcc 96
              ||||||| ||||| ||| || | | ||||||||||||||||||||| ||||| |||   |
Sbjct: 129973 ccatggcggcggcgggatccataggcgtgtacagggcggtgttcgcggcgctgggcgctc 130032

                                                                          
Query: 97     tcatggtgggcaccctggtgtacacctgcatcaccgatggctcgccgtttcgcatcgagc 156
              ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 130033 tcatgctgggcaccctggtgtacacctgcgtcaccgacggctcgccgtttcgcctcgagc 130092

                           
Query: 157    tgctgactccgtg 169
              |||| || |||||
Sbjct: 130093 tgctcaccccgtg 130105



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 53/55 (96%)
 Strand = Plus / Plus

                                                                     
Query: 527    gtggatggctgcaaccttaattgacttctatataaatgtctttgcaatatcggta 581
              ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 133308 gtggatggcggcaaccttaattgacttctatataaatgtcttcgcaatatcggta 133362



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 114/138 (82%)
 Strand = Plus / Plus

                                                                          
Query: 391    atctacccgaaaggaagtgttcttttgttgtcatcgggagaactattttcagcattttgg 450
              ||||| ||||||| ||||  ||||||||  | || ||||||| |||||||||||||||||
Sbjct: 132264 atctatccgaaagaaagtcctcttttgtcataattgggagaattattttcagcattttgg 132323

                                                                          
Query: 451    gcatactcatggctgcacttgtcacgtatactgtcattacagatggactgcctttcagga 510
              |   | | ||||||||| | || |  ||||||||||| || |||||||| ||||||||||
Sbjct: 132324 gggcaatgatggctgcagtcgtaatttatactgtcatcactgatggactacctttcagga 132383

                                
Query: 511    aggatttgttgacaccgt 528
              |||| |||||||| ||||
Sbjct: 132384 aggacttgttgaccccgt 132401



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                          
Query: 218    gacttgggttgtctacaaggaaggaaattggattagttctatcttctgggtagtactgtt 277
              |||||||||| |||||||||||| |||||||||||||||| |||| |||||||| |||||
Sbjct: 131466 gacttgggttatctacaaggaagtaaattggattagttctttcttttgggtagttctgtt 131525

               
Query: 278    g 278
              |
Sbjct: 131526 g 131526



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                          
Query: 298    ctacatgtgcttatattgttagcaagttatttgagataacatcttcagggccttcccaaa 357
              |||||||||||||| |||||   ||| | ||||| |||| | |||| || ||||| ||| 
Sbjct: 131661 ctacatgtgcttatgttgttgtgaagctttttgaaataaaaacttccggaccttcacaag 131720

                                        
Query: 358    atccgcttgatcttttgttgctcagg 383
              |||| ||||||||||| || ||||||
Sbjct: 131721 atccacttgatcttttattcctcagg 131746
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>emb|CR383672.6| Zebrafish DNA sequence from clone DKEY-11P10 in linkage group 24,
              complete sequence
          Length = 231583

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    ctacatgtgcttatattgtta 318
              |||||||||||||||||||||
Sbjct: 225553 ctacatgtgcttatattgtta 225573
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>emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, complete sequence
          Length = 191874

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 185  ggttgatttttatgtaaatat 205
            |||||||||||||||||||||
Sbjct: 7604 ggttgatttttatgtaaatat 7624
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>emb|AL928854.6| Zebrafish DNA sequence from clone CH211-59D2, complete sequence
          Length = 101762

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   ggttgatttttatgtaaatat 205
             |||||||||||||||||||||
Sbjct: 61506 ggttgatttttatgtaaatat 61486
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>gb|AC123684.8| Mus musculus chromosome 3, clone RP23-297F14, complete sequence
          Length = 200566

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  tggtgtacacctgcatcacc 131
            ||||||||||||||||||||
Sbjct: 3498 tggtgtacacctgcatcacc 3517
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>gb|AC161212.9| Mus musculus chromosome 3, clone RP24-267M11, complete sequence
          Length = 147921

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  tggtgtacacctgcatcacc 131
            ||||||||||||||||||||
Sbjct: 5973 tggtgtacacctgcatcacc 5954
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>ref|XM_978635.1| PREDICTED: Mus musculus synapse defective 1, Rho GTPase, homolog 2
            (C. elegans) (Syde2), mRNA
          Length = 6131

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  tggtgtacacctgcatcacc 131
            ||||||||||||||||||||
Sbjct: 5617 tggtgtacacctgcatcacc 5598
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>ref|XM_916172.2| PREDICTED: Mus musculus similar to synapse defective 1, Rho GTPase,
            homolog 1 (LOC639654), mRNA
          Length = 6347

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  tggtgtacacctgcatcacc 131
            ||||||||||||||||||||
Sbjct: 5833 tggtgtacacctgcatcacc 5814
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>ref|XM_001004384.1| PREDICTED: Mus musculus synapse defective 1, Rho GTPase, homolog 2
            (C. elegans) (Syde2), mRNA
          Length = 6349

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  tggtgtacacctgcatcacc 131
            ||||||||||||||||||||
Sbjct: 5835 tggtgtacacctgcatcacc 5816
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>gb|DP000038.2| Colobus guereza target 106 genomic scaffold
          Length = 481828

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gaaaggaagtgttcttttgt 418
              ||||||||||||||||||||
Sbjct: 408125 gaaaggaagtgttcttttgt 408106
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>emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chromosome 1, complete
             sequence
          Length = 88568

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   tacatgtgcttatattgtta 318
             ||||||||||||||||||||
Sbjct: 73025 tacatgtgcttatattgtta 73044
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>emb|AL590675.3| Human DNA sequence from clone RP11-297O16 on chromosome 6, complete
             sequence
          Length = 48306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   attggttgatttttatgtaaatat 205
             ||||||||||||| ||||||||||
Sbjct: 14288 attggttgattttaatgtaaatat 14311
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      ggcggtgttcgccgcgctcg 90
               ||||||||||||||||||||
Sbjct: 3050598 ggcggtgttcgccgcgctcg 3050579
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>emb|AL136143.9| Human DNA sequence from clone RP3-399C22 on chromosome 20 Contains a
             putative novel gene, complete sequence
          Length = 87157

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   ttcagcattttgggcatact 457
             ||||||||||||||||||||
Sbjct: 59333 ttcagcattttgggcatact 59352
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>emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 on chromosome 20q12-13.12
             Contains a novel gene and the SLPI gene for secretory
             leukocyte protease inhibitor (antileukoproteinase),
             complete sequence
          Length = 63796

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   gaaaggaagtgttcttttgt 418
             ||||||||||||||||||||
Sbjct: 46175 gaaaggaagtgttcttttgt 46156
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      ggcggtgttcgccgcgctcg 90
               ||||||||||||||||||||
Sbjct: 1525553 ggcggtgttcgccgcgctcg 1525534
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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1715506

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     ttgatttttatgtaaatata 206
               ||||||||||||||||||||
Sbjct: 1226120 ttgatttttatgtaaatata 1226139
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>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5
          Length = 349082

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    ttgatttttatgtaaatata 206
              ||||||||||||||||||||
Sbjct: 272538 ttgatttttatgtaaatata 272519
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>emb|BX530411.5| Zebrafish DNA sequence from clone DKEY-147I23 in linkage group 9,
           complete sequence
          Length = 21119

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 gtctttgcaatatcggtatg 583
           ||||||||||||||||||||
Sbjct: 334 gtctttgcaatatcggtatg 353
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>gb|U39676.2| Caenorhabditis elegans cosmid C23F12, complete sequence
          Length = 41059

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   attttcagcattttgggcat 454
             ||||||||||||||||||||
Sbjct: 23177 attttcagcattttgggcat 23158
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>emb|BX296565.8| Zebrafish DNA sequence from clone CH211-269E2 in linkage group 9,
             complete sequence
          Length = 61072

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 564   gtctttgcaatatcggtatg 583
             ||||||||||||||||||||
Sbjct: 59406 gtctttgcaatatcggtatg 59425
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>gb|AE011701.1| Xanthomonas axonopodis pv. citri str. 306,  section 79 of 469 of the
            complete genome
          Length = 10638

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  cctgcatcaccgatggctcg 140
            ||||||||||||||||||||
Sbjct: 2362 cctgcatcaccgatggctcg 2343
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>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 182    attggttgatttttatgtaaatat 205
              ||||||||||||| ||||||||||
Sbjct: 111178 attggttgattttaatgtaaatat 111155
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>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold
          Length = 355851

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gaaaggaagtgttcttttgt 418
              ||||||||||||||||||||
Sbjct: 319942 gaaaggaagtgttcttttgt 319923
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>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold
          Length = 644818

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gaaaggaagtgttcttttgt 418
              ||||||||||||||||||||
Sbjct: 435374 gaaaggaagtgttcttttgt 435355
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>gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, complete sequence
          Length = 215079

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   aaggaaggaaattggattag 253
             ||||||||||||||||||||
Sbjct: 90719 aaggaaggaaattggattag 90738
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>gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complete sequence
          Length = 145673

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   acttctatataaatgtcttt 569
             ||||||||||||||||||||
Sbjct: 46877 acttctatataaatgtcttt 46858
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>gb|AC037198.7|AC037198 Homo sapiens chromosome 15 clone CTD-2033D15 map 15q14, complete sequence
          Length = 185695

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    tattttcagcattttgggca 453
              ||||||||||||||||||||
Sbjct: 126976 tattttcagcattttgggca 126957
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>gb|AC011306.9| Homo sapiens BAC clone RP11-479N15 from 2, complete sequence
          Length = 170101

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   aactattttcagcattttgg 450
             ||||||||||||||||||||
Sbjct: 61955 aactattttcagcattttgg 61936
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>dbj|AB018114.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGF10
          Length = 84702

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 175   tgacaacattggttgatttttatgtaaatata 206
             |||||| ||| |||||||| ||||||||||||
Sbjct: 16022 tgacaagattagttgatttgtatgtaaatata 15991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,324,933
Number of Sequences: 3902068
Number of extensions: 5324933
Number of successful extensions: 105887
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105645
Number of HSP's gapped (non-prelim): 238
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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