ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart32e04 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 140 bits (354), Expect = 2e-33 Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 5/164 (3%) Frame = +2 Query: 89 LVTEDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFH-----REDML 253 + +++ RL RIR+TV+ M+ DRGYLV + EL F+ +YG+ R D+ Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 254 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 433 I +DP DQ++VFFP D K+G+K IK + M + +SRAI+VVQ +TP AK + Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 434 ELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 ++ PK LE F +AE+++NI EH LVPEH V+ EEK LLARY Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARY 164
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 140 bits (354), Expect = 2e-33 Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 5/155 (3%) Frame = +2 Query: 116 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 280 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 281 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 460 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILE 128 Query: 461 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 F E+LINI EH LVPEH V+ EE LLARY Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARY 163
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 140 bits (354), Expect = 2e-33 Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 5/155 (3%) Frame = +2 Query: 116 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 280 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 281 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 460 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLE 128 Query: 461 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 F E+LINI EH LVPEH V+ EE LLARY Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARY 163
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 140 bits (354), Expect = 2e-33 Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 5/155 (3%) Frame = +2 Query: 116 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 280 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 281 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 460 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILE 128 Query: 461 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 F E+LINI EH LVPEH V+ EE LLARY Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARY 163
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 94.0 bits (232), Expect = 3e-19 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Frame = +2 Query: 101 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 280 D ++ RL R RTV M+RDRGY + + EL +T DF+ KY ++ R + + N Sbjct: 6 DRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPT 65 Query: 281 NDQ---------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 433 + ++V F ++ VG+K +K +V + ++ I + Q N+TP A + Sbjct: 66 EESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVP 125 Query: 434 ELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 + P +E F +A +++NI H LVP+H L EEK LL RY Sbjct: 126 SIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 93.2 bits (230), Expect = 5e-19 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Frame = +2 Query: 110 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLI--------NKC 265 V RL R RTV M+RDRGY + + E+ ++ DF+ KY ++ R + + Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEET 68 Query: 266 KKNDPN-DQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 442 K PN ++V F ++ VG+K +K +V + + I + Q +TP A L + Sbjct: 69 LKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVA 128 Query: 443 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 P +E F + +++NI H LVP+H L++EEKK LL RY Sbjct: 129 PAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 91.7 bits (226), Expect = 1e-18 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Frame = +2 Query: 110 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ 289 + RL R RTV M+RDRGY + + E+ ++ DF+ KY ++ + + + N + Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEES 68 Query: 290 I---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 442 I +V F ++ VG+K +K +V + + I + Q +TP A L Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAA 128 Query: 443 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 P + +E F +A +++NI H LVP+H L++ EKK LL RY Sbjct: 129 PAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 91.3 bits (225), Expect = 2e-18 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Frame = +2 Query: 110 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ 289 + RL R RTV M++DRGY + + E+ + DF+ KY ++ R + + N + Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68 Query: 290 I---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 442 I +V F ++ VG+K +K +V + + I V Q N+TP A + + Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128 Query: 443 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 P +E F +A +++NI H LVP+H L+++EK+ LL RY Sbjct: 129 PAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 91.3 bits (225), Expect = 2e-18 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Frame = +2 Query: 98 EDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKND 277 ++ + RL R +TV M+RDRGY + + E+ ++ DF+ KY ++ + + + N Sbjct: 5 QERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNP 64 Query: 278 PNDQI---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFL 430 + I +V F ++ VG+K +K +V + + I + Q +TP A L Sbjct: 65 TEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKIL 124 Query: 431 QELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 P + +E F +A +++NI H LVP+H L+ EKK LL RY Sbjct: 125 PTAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 87.0 bits (214), Expect = 3e-17 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%) Frame = +2 Query: 101 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 280 D T+ RL R +TV M+RDRGY + + E+ M+ +F+ + ++ + + C + +P Sbjct: 5 DRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCFQANP 63 Query: 281 NDQ----------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFL 430 + ++V F ++ VG+K ++ + ++ + S I + Q ++TP A + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123 Query: 431 QELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 + P +E FQ+ ++++NI H LVP+H LA +EKK LL RY Sbjct: 124 PTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 86.7 bits (213), Expect = 4e-17 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Frame = +2 Query: 98 EDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKY---GETFHREDMLINKCK 268 E+ + R+ R +T ++ DRGY V + EL +T F+ + G R + Sbjct: 4 EEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKP 63 Query: 269 KNDPND-QIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEP 445 ND N IY+ F + VG+K ++ +V + IL+ ++TP A + + Sbjct: 64 SNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTG 123 Query: 446 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 + +E FQ++++++NI H LVP+H +L+ +EKK LL RY Sbjct: 124 QFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRY 163
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 73.6 bits (179), Expect = 4e-13 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Frame = +2 Query: 116 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ-- 289 +L ++ RT +++DRGY + + E++++ F + + + + C P+ + Sbjct: 8 KLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKP-IKKKMCFMASPSPEAI 66 Query: 290 --------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEP 445 I+V F + V +K ++ + ++ K + ILV + N+TP A + + P Sbjct: 67 EKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSVAP 126 Query: 446 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 ++ FQ+ ++L+NI +HVLVP H L+ EKK LL RY Sbjct: 127 AT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165
>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/26 (65%), Positives = 22/26 (84%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLLARY 565 NI +HVLVPEH++L+ EEKK LL +Y Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKY 33
>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/26 (65%), Positives = 22/26 (84%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLLARY 565 NI +HVLVPEH++L+ EEKK LL +Y Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKY 33
>RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 39.3 bits (90), Expect = 0.008 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = +2 Query: 473 AEMLINIKEHVLVPEHQVLANEEKKTLLARY 565 A+ NI +HVLVPEH++L+ EEK+ LL +Y Sbjct: 3 AKKEFNIFDHVLVPEHRILSEEEKEELLKKY 33
>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 39.3 bits (90), Expect = 0.008 Identities = 17/26 (65%), Positives = 22/26 (84%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLLARY 565 +I +HVLVPEH+VL+ EEKK LL +Y Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKY 33
>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 33.9 bits (76), Expect = 0.33 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLLARY 565 +I H LVPEH++L+ EE K LL RY Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRY 33
>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase SMARCAD1) (Enhancer trap locus homolog 1) (Etl-1) Length = 1021 Score = 33.5 bits (75), Expect = 0.43 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 11/101 (10%) Frame = +2 Query: 254 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 421 I C ++ +Q+Y N K + +++K EM N K++ L+ +Q TP Sbjct: 733 IELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTPEKL 792 Query: 422 SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQ 523 + +L K H E +F+D E++ + + HVL ++Q Sbjct: 793 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQ 833
>RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 33.1 bits (74), Expect = 0.56 Identities = 12/23 (52%), Positives = 19/23 (82%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLL 556 N+ +H LVPEH +++ EE+KT+L Sbjct: 5 NVLDHNLVPEHHIVSEEEEKTIL 27
>TERT_EUPAE (O00939) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (Telomerase subunit P123) Length = 1031 Score = 33.1 bits (74), Expect = 0.56 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Frame = +2 Query: 176 VEHELSMTRRDFQRKYGETF-HREDMLINKCKKNDPNDQIYVFFPNDEKVG------MKH 334 +E+ ++ TR + + Y E F + D NKC N+ Y P D G K Sbjct: 330 IENLINKTREEKSKYYEELFSYTTD---NKCVTQFINEFFYNILPKDFLTGRNRKNFQKK 386 Query: 335 IKKYVEMMNAEKVSRAILVVQQN 403 +KKYVE+ E + + +L+ + N Sbjct: 387 VKKYVELNKHELIHKNLLLEKIN 409
>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 31.6 bits (70), Expect = 1.6 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +2 Query: 485 INIKEHVLVPEHQVLANEEKKTLLARY 565 + + +H+LVP+H+++ EE + +L RY Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRY 27
>SEM6D_PONPY (Q5R7F5) Semaphorin-6D precursor| Length = 1017 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +1 Query: 196 DPPRLPAQV---RRDLPPRGHAHQQVQEERPQRPDLRVLP 306 D P+L + + R++LPP G V + R Q P+L LP Sbjct: 677 DSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALP 716
>SEM6D_HUMAN (Q8NFY4) Semaphorin-6D precursor| Length = 1073 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +1 Query: 196 DPPRLPAQV---RRDLPPRGHAHQQVQEERPQRPDLRVLP 306 D P+L + + R++LPP G V + R Q P+L LP Sbjct: 733 DSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALP 772
>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 76 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +2 Query: 479 MLINIKEHVLVPEHQVLANEEKKTLL 556 M +++H+LVP+H+VL+ EE + LL Sbjct: 1 MKFKLQDHMLVPKHEVLSKEEAEELL 26
>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1) Length = 1026 Score = 31.2 bits (69), Expect = 2.1 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Frame = +2 Query: 254 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 421 I C ++ +Q+Y+ N K + +++K EM N K++ L+ +Q T Sbjct: 738 IELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 797 Query: 422 SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQVLAN 535 + +L K H E +F+D E++ + + HVL +++ + N Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 842
>CD36_MESAU (P70110) Platelet glycoprotein 4 (Platelet glycoprotein IV) (GPIV)| (GPIIIB) (CD36 antigen) (PAS IV) (PAS-4 protein) Length = 471 Score = 30.8 bits (68), Expect = 2.8 Identities = 21/87 (24%), Positives = 41/87 (47%) Frame = +2 Query: 254 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 433 I+KCK+ P +Y+ P+ I + +E +N + + + +T F F + Sbjct: 329 ISKCKQGRP---VYISLPHFLHAS-PDISEPIEGLNPNEEEHRTYLDVEPITGFTLQFAK 384 Query: 434 ELEPKIHLEVFQDAEMLINIKEHVLVP 514 L+ I ++ + E L N+K + +VP Sbjct: 385 RLQVNILVKPARKIEALKNLKRNYIVP 411
>RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 30.4 bits (67), Expect = 3.6 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 488 NIKEHVLVPEHQVLANEEKKTLL 556 N+ +H LVPEH ++ EE+K +L Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNIL 27
>CF152_HUMAN (Q86VQ0) Protein C6orf152| Length = 697 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 211 PAQVRRDLPPRGHAHQQVQEERPQRPDLRVLPQRR 315 PA VRR P R + QV + P++P + LP R+ Sbjct: 43 PASVRRKNPKRQTSDGQVHHQAPRKPSPKGLPNRK 77
>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7| Length = 1130 Score = 30.4 bits (67), Expect = 3.6 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 16/110 (14%) Frame = +1 Query: 202 PRLPAQVRRDLPPR--GHAHQQ--------VQEERPQRPDLRVLPQRREGGDEAHQEVR* 351 P+ RR+ PP GH H+Q V E+ PQRPD AH R Sbjct: 995 PKKQEDPRREYPPSPDGHPHRQKREPIRLDVVEQPPQRPDFPSAASENASHGPAHVRAR- 1053 Query: 352 NDERRESLKGYIGCATEPHPIC--EIVPPRTGAK----DPLGGFPGRRNA 483 + G H C E++ R+ + +PLG +RNA Sbjct: 1054 TAVETDLTFGLTSNRPPSHSACSSEVLEERSSRRLTDSEPLGHGAHQRNA 1103
>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)| Length = 411 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +1 Query: 202 PRLPAQVRRDLPPRGHAHQQVQEERPQRPDLRVLPQRREGGDEAHQEVR*NDERRESLKG 381 P LPA V + LPP + +++ PQ P L LP DE + + E + Sbjct: 278 PALPANVLKPLPPVPVSVSSQEDKLPQLPPLPQLPDT----DENYVTPIEDSPAAEYMNQ 333 Query: 382 YIGCATEPHPICEIVPPRTGAKDP 453 + +++ P+ P R AK P Sbjct: 334 DVSLSSQAVPLKPKKPARLPAKPP 357
>GLMU_NITOC (Q3J6N3) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 453 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +2 Query: 335 IKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVP 514 + K +E +A R I V +T +L+++ PK+ Q L +I EH + Sbjct: 147 VSKIIEEADASPEQRRIREVNTGITAIEARYLKQIAPKLSNNNAQGEYYLTDIIEHAVAS 206 Query: 515 EHQVLA 532 +V+A Sbjct: 207 GEKVVA 212
>MCE1_YARLI (Q6C783) mRNA capping enzyme alpha subunit (mRNA| guanylyltransferase) (EC 2.7.7.50) (GTP--RNA guanylyltransferase) (GTase) Length = 391 Score = 29.6 bits (65), Expect = 6.2 Identities = 21/88 (23%), Positives = 39/88 (44%) Frame = +2 Query: 188 LSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAE 367 L T RD R YGE + ++ N +P ++ V D+K ++++ + NA Sbjct: 271 LVWTGRDGSRPYGELYLTDEEWDNLKALEEPLEERVVECIKDDKKRWRYLRFRDDKTNAN 330 Query: 368 KVSRAILVVQQNLTPFAKSFLQELEPKI 451 ++ V+ P ++ L + PKI Sbjct: 331 YITTVEKVIDSIDDPVSEKNLLDAAPKI 358
>SOML_ACITR (O93262) Somatolactin precursor (SL)| Length = 232 Score = 29.3 bits (64), Expect = 8.1 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Frame = +2 Query: 116 RLVRIRRTVMHMLR---DRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPND 286 +L + + ++ ++R D G L V+H+ ++TR D Q + E+ R+ ++ KK+ Sbjct: 153 KLSSLEQGIVELIRKMLDEGLLAVDHQQTLTRFDVQPEVVESILRDYAVLTCFKKDAHKM 212 Query: 287 QIYV 298 ++++ Sbjct: 213 EVFL 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,033,509 Number of Sequences: 219361 Number of extensions: 1216943 Number of successful extensions: 4697 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4672 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
