>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 768

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 24/80 (30%), Positives = 30/80 (37%)
 Frame = +1

Query: 91  PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 270
           P +     CQSLE  P G MA  +P+A            +P      S+T    G G W 
Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312

Query: 271 LWTRTSAPASSPTARWCRPP 330
                S P  +  A  C PP
Sbjct: 313 -----SEPLPTCEAIACEPP 327

>RPOL_BPK11 (P18147) DNA-directed RNA polymerase (EC 2.7.7.6)|
          Length = 906

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
 Frame = +3

Query: 162 PRGDDTTPP----APARVLGTVASRWRELHGENSWDGLLDPLDPHLRSSIISYGEMVQAA 329
           P+G+D T      A  + +G     W ++HG N       P    ++    + G ++ +A
Sbjct: 457 PQGNDMTKGSLTLAKGKPIGLDGFYWLKIHGANCAGVDKVPFPERIKFIEENEGNILASA 516

Query: 330 YDGFN----TERRSPHCGACF-YAYEDLLAGVGVPHHGNNY 437
            D  N    T++ SP C   F + Y       GV HHG NY
Sbjct: 517 ADPLNNTWWTQQDSPFCFLAFCFEY------AGVKHHGLNY 551

>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP|
          Length = 552

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = +3

Query: 114 LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENSWDGLLDPL------ 275
           +P+   I + +   E+  GDDTT P  AR   T    W  +  +  + G   P       
Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306

Query: 276 ----DPHLRSSIISYGEMVQA-AYDGF 341
                 H +  +  YG ++Q+  Y+GF
Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 97  RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 273
           RSS +HC+  L+  P G      PVA         +SS   PA  ++S A +  +GS T 
Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557

Query: 274 WTRTSAPASSPTARWCRPPTTG 339
             + S   S  TA   RPP  G
Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577

>MTC3_PBCVC (P10835) Modification methylase CviBIII (EC 2.1.1.72)|
           (Adenine-specific methyltransferase CviBIII) (M.CviBIII)
          Length = 377

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 351 RRSPHCGACFYAYEDLLAGVGVPHHGNNY 437
           + SP  G   Y Y D +    +PHHGN+Y
Sbjct: 211 KNSPGTGK--YTYRDYICDKDIPHHGNSY 237

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 97  RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 273
           RSS +HC+ +L+  P G     +P A          SS   PA  + S + +  +GS T 
Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556

Query: 274 WTRTSAPASSPTARWCRPPTTG 339
            T+ S   S  TA   RPP  G
Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,426,984
Number of Sequences: 219361
Number of extensions: 1469300
Number of successful extensions: 4664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4657
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)